Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.46970 * 2 1 4 4 C 1.34222 * 117.00015 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00326 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00138 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47434 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47361 * 56.51007 * 7 6 4 9 9 C 1.50704 * 109.47618 * 176.51099 * 7 6 4 10 10 H 1.08003 * 119.99408 * 54.73394 * 9 7 6 11 11 C 1.37873 * 120.00118 * 234.74402 * 9 7 6 12 12 N 1.31513 * 119.99826 * 5.02612 * 11 9 7 13 13 Si 1.86801 * 119.99882 * 185.02661 * 11 9 7 14 14 H 1.48502 * 109.46995 * 274.97106 * 13 11 9 15 15 H 1.48497 * 109.47113 * 34.97446 * 13 11 9 16 16 H 1.48498 * 109.46827 * 154.97507 * 13 11 9 17 17 O 1.42902 * 109.46868 * 296.50959 * 7 6 4 18 18 C 1.35691 * 116.99917 * 159.05231 * 17 7 6 19 19 C 1.38925 * 120.16257 * 277.66631 * 18 17 7 20 20 F 1.35099 * 119.97300 * 359.97438 * 19 18 17 21 21 C 1.38204 * 120.04833 * 179.72442 * 19 18 17 22 22 C 1.38568 * 120.37962 * 0.55084 * 21 19 18 23 23 C 1.37740 * 120.32690 * 359.73016 * 22 21 19 24 24 C 1.39810 * 119.94279 * 359.97438 * 23 22 21 25 25 C 1.47405 * 120.18372 * 180.02562 * 24 23 22 26 26 O 1.21515 * 119.99661 * 185.54331 * 25 24 23 27 27 O 1.34746 * 120.00075 * 5.54212 * 25 24 23 28 28 C 1.45204 * 116.99720 * 185.11773 * 27 25 24 29 29 H 1.08998 * 109.46764 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47293 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.47015 * 59.99997 * 1 2 3 32 32 H 1.09002 * 109.47458 * 240.00560 * 2 1 3 33 33 H 1.08999 * 109.47015 * 120.00003 * 2 1 3 34 34 H 1.09002 * 109.47054 * 60.00236 * 6 4 3 35 35 H 1.09005 * 109.47054 * 300.00016 * 6 4 3 36 36 H 0.97001 * 120.00062 * 354.81053 * 12 11 9 37 37 H 1.08006 * 119.80636 * 180.28083 * 21 19 18 38 38 H 1.07999 * 119.83827 * 179.74739 * 22 21 19 39 39 H 1.08003 * 120.02672 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47318 * 64.95703 * 28 27 25 41 41 H 1.09003 * 109.46955 * 184.95178 * 28 27 25 42 42 H 1.08992 * 109.47509 * 304.95355 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7817 2.2726 -0.8562 9 6 6.0244 4.2475 -0.0848 10 1 5.7342 4.9976 0.6359 11 6 6.9216 4.5615 -1.0835 12 7 7.1997 3.6797 -2.0187 13 14 7.7423 6.2394 -1.1080 14 1 6.8563 7.2138 -1.7942 15 1 7.9888 6.6903 0.2852 16 1 9.0341 6.1480 -1.8347 17 8 5.8928 2.2315 1.2064 18 6 7.1359 1.6877 1.1961 19 6 7.3383 0.4184 0.6688 20 9 6.2955 -0.2773 0.1651 21 6 8.6064 -0.1308 0.6543 22 6 9.6809 0.5729 1.1743 23 6 9.4970 1.8301 1.7062 24 6 8.2210 2.4012 1.7222 25 6 8.0183 3.7465 2.2896 26 8 6.8953 4.1989 2.3942 27 8 9.0781 4.4746 2.6924 28 6 8.7981 5.7409 3.3454 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5844 3.4693 0.8912 35 1 3.5850 3.4699 -0.8888 36 1 6.8325 2.7835 -1.9649 37 1 8.7600 -1.1161 0.2392 38 1 10.6674 0.1336 1.1622 39 1 10.3378 2.3741 2.1106 40 1 8.2828 5.5574 4.2882 41 1 9.7342 6.2647 3.5390 42 1 8.1672 6.3512 2.6994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233684088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -240.541453 kcal Electronic energy + Delta-G solvation = -31605.261704 eV Core-core repulsion = 27044.449540 eV Total energy + Delta-G solvation = -4560.812164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.68743 -41.63554 -41.34356 -39.98076 -38.51730 -37.49128 -37.05693 -35.32024 -33.15965 -32.40243 -32.09744 -30.42046 -28.53271 -27.56195 -25.18694 -24.92157 -23.75309 -23.12806 -22.03943 -21.70398 -19.71486 -19.14589 -18.69614 -18.26383 -18.01418 -17.53409 -17.39115 -17.31576 -16.94165 -16.76564 -16.50673 -16.08574 -15.73672 -15.33190 -15.23783 -15.17626 -14.64797 -14.37561 -14.21930 -13.93116 -13.88045 -13.57847 -13.36131 -13.16000 -13.03208 -12.93658 -12.78111 -12.71315 -12.59828 -12.52308 -12.08710 -11.88850 -11.69064 -11.53810 -11.52939 -11.40636 -11.17962 -10.76081 -10.17604 -9.97767 -9.50575 -8.69663 -6.43485 -0.36707 0.11536 1.23905 1.42853 1.49345 1.65805 1.69421 1.72058 1.80360 2.42272 2.49057 3.01435 3.19235 3.38353 3.76294 3.83032 3.88743 3.95072 4.07401 4.14018 4.20881 4.27090 4.28913 4.31296 4.37449 4.40062 4.43001 4.69051 4.78752 4.82108 4.87868 4.95506 5.03540 5.07469 5.11804 5.16069 5.22247 5.43996 5.48178 5.72953 5.80416 6.15640 6.46731 6.79349 6.81710 7.00561 7.35248 8.62151 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.005125 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.140736 B = 5461.838448 C = 6479.466540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.366 6.366 4 C 0.454 3.546 5 O -0.513 6.513 6 C -0.089 4.089 7 C 0.214 3.786 8 H 0.013 0.987 9 C -0.584 4.584 10 H 0.056 0.944 11 C -0.011 4.011 12 N -0.918 5.918 13 Si 1.093 2.907 14 H -0.266 1.266 15 H -0.272 1.272 16 H -0.278 1.278 17 O -0.346 6.346 18 C 0.133 3.867 19 C 0.020 3.980 20 F -0.132 7.132 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.064 4.064 24 C -0.143 4.143 25 C 0.497 3.503 26 O -0.481 6.481 27 O -0.364 6.364 28 C 0.031 3.969 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.171 0.829 40 H 0.067 0.933 41 H 0.139 0.861 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -4.214 7.189 8.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 O -0.284 6.284 4 C 0.297 3.703 5 O -0.400 6.400 6 C -0.126 4.126 7 C 0.161 3.839 8 H 0.031 0.969 9 C -0.621 4.621 10 H 0.074 0.926 11 C -0.212 4.212 12 N -0.557 5.557 13 Si 0.915 3.085 14 H -0.191 1.191 15 H -0.197 1.197 16 H -0.204 1.204 17 O -0.264 6.264 18 C 0.086 3.914 19 C 0.000 4.000 20 F -0.111 7.111 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.082 4.082 24 C -0.145 4.145 25 C 0.340 3.660 26 O -0.367 6.367 27 O -0.282 6.282 28 C -0.062 4.062 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.067 0.933 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.188 0.812 40 H 0.085 0.915 41 H 0.157 0.843 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.079 -3.414 6.469 7.605 hybrid contribution -1.655 -1.113 0.471 2.049 sum 0.424 -4.526 6.941 8.297 Atomic orbital electron populations 1.21803 0.89721 1.04477 1.03739 1.23263 0.97485 0.79572 1.01960 1.86516 1.23976 1.33621 1.84247 1.24277 0.80679 0.93358 0.71973 1.90709 1.60626 1.43523 1.45184 1.21573 0.95072 0.90090 1.05881 1.19959 0.89629 0.92312 0.81964 0.96904 1.22347 1.28009 0.96346 1.15385 0.92572 1.27077 0.94979 1.07517 0.91584 1.70957 1.46072 1.05551 1.33087 0.83280 0.76595 0.71670 0.76956 1.19105 1.19706 1.20364 1.85909 1.26954 1.73684 1.39871 1.18982 0.86642 0.90284 0.95524 1.18569 0.86580 0.92064 1.02774 1.91556 1.56734 1.77697 1.85119 1.21703 0.89532 1.02301 0.99181 1.21394 1.00155 0.93627 0.97496 1.21788 0.94608 0.95823 0.95948 1.19517 0.94859 0.92611 1.07511 1.20878 0.83044 0.85640 0.76393 1.90876 1.25437 1.70649 1.49767 1.86460 1.36432 1.34086 1.71173 1.23499 1.04728 0.81657 0.96288 0.87828 0.91226 0.91163 0.91936 0.92092 0.87527 0.86284 0.93342 0.81370 0.79261 0.81169 0.91464 0.84318 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 10.29 71.98 0.74 -2.03 16 2 C 0.05 1.48 6.19 71.98 0.45 1.92 16 3 O -0.37 -13.44 10.22 -51.34 -0.52 -13.96 16 4 C 0.45 19.96 7.83 71.24 0.56 20.51 16 5 O -0.51 -25.15 12.29 27.36 0.34 -24.81 16 6 C -0.09 -4.06 5.51 29.85 0.16 -3.90 16 7 C 0.21 11.49 2.04 29.85 0.06 11.55 16 8 H 0.01 0.78 5.33 -2.39 -0.01 0.77 16 9 C -0.58 -32.48 6.09 25.60 0.16 -32.32 16 10 H 0.06 3.25 6.78 -2.91 -0.02 3.23 16 11 C -0.01 -0.61 5.45 84.65 0.46 -0.15 16 12 N -0.92 -54.67 13.65 21.45 0.29 -54.37 16 13 Si 1.09 49.69 29.91 68.60 2.05 51.75 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 O -0.35 -18.62 7.15 -62.43 -0.45 -19.07 16 18 C 0.13 6.46 5.48 22.89 0.13 6.58 16 19 C 0.02 0.88 7.26 22.43 0.16 1.04 16 20 F -0.13 -6.39 14.25 44.97 0.64 -5.75 16 21 C -0.11 -3.50 10.01 22.34 0.22 -3.28 16 22 C -0.11 -2.91 10.02 22.23 0.22 -2.69 16 23 C -0.06 -2.03 9.61 22.53 0.22 -1.82 16 24 C -0.14 -6.19 5.87 -20.03 -0.12 -6.30 16 25 C 0.50 22.13 7.37 70.24 0.52 22.64 16 26 O -0.48 -24.40 11.91 26.77 0.32 -24.08 16 27 O -0.36 -13.13 9.83 -56.56 -0.56 -13.69 16 28 C 0.03 0.89 10.66 113.37 1.21 2.10 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 33 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 34 H 0.11 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.12 5.12 8.14 -2.38 -0.02 5.11 16 36 H 0.25 15.75 6.25 -92.71 -0.58 15.17 16 37 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.19 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.17 4.25 7.62 -2.91 -0.02 4.22 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.04 1.44 7.97 -2.39 -0.02 1.43 16 Total: -1.00 -78.21 363.55 8.51 -69.71 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.25 Total: 20.41 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 5.15 Total: 13.87 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.29 Total: -54.37 kcal Atomic # 8 Polarization: -94.74 SS G_CDS: -0.87 Total: -95.61 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.64 Total: -5.75 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.75 kcal Total: -78.21 8.51 -69.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233684088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.835 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds