Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47196 * 2 1 4 4 C 1.34232 * 116.99874 * 184.84538 * 3 2 1 5 5 O 1.20819 * 119.99998 * 354.92470 * 4 3 2 6 6 C 1.50701 * 119.99671 * 174.91624 * 4 3 2 7 7 C 1.53004 * 109.47019 * 172.51521 * 6 4 3 8 8 H 1.09000 * 109.46891 * 53.64158 * 7 6 4 9 9 C 1.50697 * 109.47093 * 173.63904 * 7 6 4 10 10 H 1.08000 * 120.00165 * 239.99782 * 9 7 6 11 11 C 1.37880 * 119.99663 * 60.00285 * 9 7 6 12 12 N 1.31518 * 119.99630 * 179.97438 * 11 9 7 13 13 Si 1.86790 * 120.00235 * 359.97438 * 11 9 7 14 14 H 1.48498 * 109.47287 * 269.99891 * 13 11 9 15 15 H 1.48498 * 109.47151 * 30.00237 * 13 11 9 16 16 H 1.48511 * 109.47012 * 150.00015 * 13 11 9 17 17 O 1.42902 * 109.47302 * 293.64302 * 7 6 4 18 18 C 1.35692 * 117.00135 * 114.29206 * 17 7 6 19 19 C 1.40412 * 120.96533 * 63.62391 * 18 17 7 20 20 O 1.35556 * 120.53413 * 359.97438 * 19 18 17 21 21 N 1.32400 * 118.93803 * 180.02562 * 19 18 17 22 22 C 1.32050 * 121.04208 * 359.97438 * 21 19 18 23 23 N 1.31340 * 122.17409 * 359.97438 * 22 21 19 24 24 C 1.33509 * 120.93512 * 359.71052 * 23 22 21 25 25 C 1.47965 * 120.57518 * 180.28391 * 24 23 22 26 26 O 1.21438 * 120.00084 * 174.65244 * 25 24 23 27 27 O 1.34690 * 120.00066 * 354.65116 * 25 24 23 28 28 C 1.45197 * 117.00143 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47315 * 300.00008 * 1 2 3 30 30 H 1.09006 * 109.47182 * 59.99731 * 1 2 3 31 31 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47430 * 240.00502 * 2 1 3 33 33 H 1.08999 * 109.47390 * 120.00605 * 2 1 3 34 34 H 1.09008 * 109.46712 * 52.52198 * 6 4 3 35 35 H 1.08994 * 109.47381 * 292.51832 * 6 4 3 36 36 H 0.96992 * 120.00269 * 180.02562 * 12 11 9 37 37 H 0.96701 * 114.00180 * 89.99883 * 20 19 18 38 38 H 1.08001 * 118.91080 * 179.97438 * 22 21 19 39 39 H 1.09004 * 109.47571 * 180.02562 * 28 27 25 40 40 H 1.08997 * 109.47353 * 300.00373 * 28 27 25 41 41 H 1.08998 * 109.47207 * 59.99877 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3407 1.5462 -0.1010 5 8 4.0801 0.5907 -0.0942 6 6 3.9079 2.9371 -0.2231 7 6 5.4341 2.8751 -0.1347 8 1 5.8121 2.1652 -0.8704 9 6 6.0092 4.2401 -0.4121 10 1 6.6856 4.3826 -1.2419 11 6 5.6720 5.3069 0.3936 12 7 6.1743 6.4981 0.1518 13 14 4.5017 5.0605 1.8285 14 1 3.1060 5.2833 1.3729 15 1 4.6383 3.6754 2.3463 16 1 4.8306 6.0269 2.9071 17 8 5.8186 2.4534 1.1754 18 6 6.4398 1.2514 1.2782 19 6 7.6899 1.0305 0.6781 20 8 8.3032 2.0181 -0.0192 21 7 8.2596 -0.1580 0.8033 22 6 7.6711 -1.1274 1.4798 23 7 6.5030 -0.9670 2.0586 24 6 5.8576 0.1997 1.9902 25 6 4.5449 0.3735 2.6505 26 8 4.0122 1.4647 2.6649 27 8 3.9408 -0.6786 3.2355 28 6 2.6551 -0.4345 3.8645 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5221 3.5589 0.5848 35 1 3.6166 3.3654 -1.1821 36 1 5.9374 7.2486 0.7187 37 1 8.8834 2.5760 0.5167 38 1 8.1666 -2.0837 1.5598 39 1 2.2799 -1.3623 4.2965 40 1 2.7711 0.3112 4.6510 41 1 1.9493 -0.0690 3.1187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233755837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -171.057926 kcal Electronic energy + Delta-G solvation = -32645.577893 eV Core-core repulsion = 28107.698723 eV Total energy + Delta-G solvation = -4537.879171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16819 -40.07864 -39.74807 -37.96603 -37.00828 -36.17232 -36.04784 -33.51258 -32.93162 -31.87578 -31.18925 -29.80598 -27.90716 -26.51982 -25.01635 -23.75028 -23.26427 -21.83926 -21.45271 -20.38748 -18.91023 -18.25454 -18.02548 -17.44285 -16.84099 -16.66710 -16.45883 -16.31392 -15.92966 -15.88296 -15.32733 -14.66634 -14.51941 -14.27227 -13.63031 -13.52625 -13.41917 -13.08272 -12.92942 -12.84312 -12.76458 -12.66791 -12.08742 -12.01616 -11.93355 -11.65207 -11.49395 -11.11794 -10.72368 -10.65956 -10.62446 -10.45072 -10.36636 -10.28447 -10.23273 -10.06749 -9.49570 -9.24590 -8.90727 -8.64944 -8.24883 -6.37528 -4.48183 0.64087 1.09244 2.55017 2.70698 2.82151 3.03125 3.24131 3.34764 3.64223 3.67559 3.87096 4.20026 4.33672 4.37216 4.67758 4.89736 4.95373 5.04457 5.12079 5.15008 5.16358 5.18477 5.27172 5.32677 5.48375 5.65551 5.72285 5.73947 5.90308 5.92356 5.97419 6.14206 6.37342 6.47660 6.59000 6.80073 6.93438 7.23607 7.74965 7.94361 8.10698 8.15516 8.22269 8.25196 8.67960 9.24329 10.70000 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.007477 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.056610 B = 3743.934122 C = 5296.277282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.471 3.529 5 O -0.521 6.521 6 C -0.126 4.126 7 C 0.201 3.799 8 H 0.055 0.945 9 C -0.517 4.517 10 H 0.091 0.909 11 C 0.092 3.908 12 N -0.870 5.870 13 Si 0.840 3.160 14 H -0.280 1.280 15 H -0.187 1.187 16 H -0.295 1.295 17 O -0.296 6.296 18 C 0.099 3.901 19 C 0.323 3.677 20 O -0.450 6.450 21 N -0.509 5.509 22 C 0.272 3.728 23 N -0.468 5.468 24 C 0.119 3.881 25 C 0.526 3.474 26 O -0.466 6.466 27 O -0.342 6.342 28 C 0.035 3.965 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.408 0.592 38 H 0.202 0.798 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -13.106 4.187 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.316 3.684 5 O -0.410 6.410 6 C -0.163 4.163 7 C 0.149 3.851 8 H 0.073 0.927 9 C -0.553 4.553 10 H 0.109 0.891 11 C -0.116 4.116 12 N -0.504 5.504 13 Si 0.668 3.332 14 H -0.207 1.207 15 H -0.110 1.110 16 H -0.222 1.222 17 O -0.210 6.210 18 C 0.046 3.954 19 C 0.130 3.870 20 O -0.257 6.257 21 N -0.237 5.237 22 C -0.016 4.016 23 N -0.187 5.187 24 C -0.024 4.024 25 C 0.367 3.633 26 O -0.350 6.350 27 O -0.258 6.258 28 C -0.059 4.059 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.268 0.732 38 H 0.218 0.782 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.206 -13.708 3.996 15.569 hybrid contribution -0.833 0.939 0.877 1.532 sum -7.039 -12.768 4.873 15.373 Atomic orbital electron populations 1.21788 0.92956 1.02538 1.03469 1.22913 0.95111 0.81355 1.02069 1.86568 1.25976 1.31294 1.83945 1.24406 0.79790 0.93551 0.70628 1.90584 1.59850 1.43661 1.46937 1.22534 0.98734 0.89483 1.05566 1.20388 0.87523 0.97268 0.79961 0.92670 1.21014 1.30112 0.88500 1.15629 0.89144 1.25107 0.95075 0.94657 0.96768 1.69897 1.41920 1.00337 1.38291 0.87638 0.80042 0.82855 0.82705 1.20722 1.11007 1.22211 1.86787 1.73258 1.26605 1.34315 1.20973 0.91918 0.88946 0.93590 1.20055 0.89215 0.87736 0.89984 1.84802 1.64017 1.41367 1.35517 1.67770 1.38335 1.01363 1.16194 1.24417 0.88567 0.97619 0.91038 1.68242 1.09047 1.21586 1.19809 1.20358 0.92947 0.88526 1.00554 1.20459 0.84539 0.82350 0.75925 1.90966 1.63706 1.25705 1.54616 1.86648 1.34613 1.38335 1.66163 1.23265 0.82268 1.02953 0.97437 0.91588 0.91516 0.90584 0.91597 0.91982 0.88200 0.86387 0.91976 0.73225 0.78161 0.88144 0.91888 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.83 6.21 37.16 0.23 1.07 16 3 O -0.36 -6.42 10.22 -39.26 -0.40 -6.82 16 4 C 0.47 9.49 6.03 36.01 0.22 9.71 16 5 O -0.52 -11.06 11.45 -24.17 -0.28 -11.34 16 6 C -0.13 -2.68 4.94 -27.88 -0.14 -2.82 16 7 C 0.20 4.62 1.41 -27.88 -0.04 4.58 16 8 H 0.06 1.30 6.96 -51.93 -0.36 0.94 16 9 C -0.52 -13.27 9.53 -34.44 -0.33 -13.60 16 10 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.09 2.44 5.45 -17.82 -0.10 2.35 16 12 N -0.87 -24.47 13.96 55.43 0.77 -23.70 16 13 Si 0.84 20.26 23.84 -169.99 -4.05 16.21 16 14 H -0.28 -6.63 6.93 56.52 0.39 -6.24 16 15 H -0.19 -4.53 3.74 56.52 0.21 -4.31 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 17 O -0.30 -6.75 4.63 -49.15 -0.23 -6.97 16 18 C 0.10 2.08 4.77 -38.21 -0.18 1.90 16 19 C 0.32 6.22 7.48 -16.49 -0.12 6.09 16 20 O -0.45 -8.35 12.64 -30.60 -0.39 -8.74 16 21 N -0.51 -8.87 10.44 -14.49 -0.15 -9.02 16 22 C 0.27 4.22 12.26 -92.32 -1.13 3.09 16 23 N -0.47 -8.32 10.25 -11.17 -0.11 -8.43 16 24 C 0.12 2.38 5.63 -82.60 -0.46 1.92 16 25 C 0.53 10.33 6.48 34.72 0.23 10.56 16 26 O -0.47 -9.93 11.90 -27.42 -0.33 -10.26 16 27 O -0.34 -5.72 10.42 -40.47 -0.42 -6.14 16 28 C 0.03 0.43 10.56 101.05 1.07 1.49 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.91 8.09 -51.93 -0.42 0.48 16 33 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 34 H 0.10 2.25 3.47 -51.92 -0.18 2.07 16 35 H 0.12 2.29 8.14 -51.93 -0.42 1.87 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.41 5.87 9.06 45.56 0.41 6.28 16 38 H 0.20 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -32.88 344.75 -4.83 -37.71 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.06 Total: 7.12 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: -0.38 Total: 25.19 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.51 Total: -41.15 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.04 Total: -50.28 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.05 Total: 16.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.88 -4.83 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233755837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.347 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds