Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47196 * 2 1 4 4 C 1.34232 * 116.99874 * 184.84538 * 3 2 1 5 5 O 1.20819 * 119.99998 * 354.92470 * 4 3 2 6 6 C 1.50701 * 119.99671 * 174.91624 * 4 3 2 7 7 C 1.53004 * 109.47019 * 172.51521 * 6 4 3 8 8 H 1.09000 * 109.46891 * 53.64158 * 7 6 4 9 9 C 1.50697 * 109.47093 * 173.63904 * 7 6 4 10 10 H 1.08000 * 120.00165 * 239.99782 * 9 7 6 11 11 C 1.37880 * 119.99663 * 60.00285 * 9 7 6 12 12 N 1.31518 * 119.99630 * 179.97438 * 11 9 7 13 13 Si 1.86790 * 120.00235 * 359.97438 * 11 9 7 14 14 H 1.48498 * 109.47287 * 269.99891 * 13 11 9 15 15 H 1.48498 * 109.47151 * 30.00237 * 13 11 9 16 16 H 1.48511 * 109.47012 * 150.00015 * 13 11 9 17 17 O 1.42902 * 109.47302 * 293.64302 * 7 6 4 18 18 C 1.35692 * 117.00135 * 114.29206 * 17 7 6 19 19 C 1.40412 * 120.96533 * 63.62391 * 18 17 7 20 20 O 1.35556 * 120.53413 * 359.97438 * 19 18 17 21 21 N 1.32400 * 118.93803 * 180.02562 * 19 18 17 22 22 C 1.32050 * 121.04208 * 359.97438 * 21 19 18 23 23 N 1.31340 * 122.17409 * 359.97438 * 22 21 19 24 24 C 1.33509 * 120.93512 * 359.71052 * 23 22 21 25 25 C 1.47965 * 120.57518 * 180.28391 * 24 23 22 26 26 O 1.21438 * 120.00084 * 174.65244 * 25 24 23 27 27 O 1.34690 * 120.00066 * 354.65116 * 25 24 23 28 28 C 1.45197 * 117.00143 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47315 * 300.00008 * 1 2 3 30 30 H 1.09006 * 109.47182 * 59.99731 * 1 2 3 31 31 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47430 * 240.00502 * 2 1 3 33 33 H 1.08999 * 109.47390 * 120.00605 * 2 1 3 34 34 H 1.09008 * 109.46712 * 52.52198 * 6 4 3 35 35 H 1.08994 * 109.47381 * 292.51832 * 6 4 3 36 36 H 0.96992 * 120.00269 * 180.02562 * 12 11 9 37 37 H 0.96701 * 114.00180 * 89.99883 * 20 19 18 38 38 H 1.08001 * 118.91080 * 179.97438 * 22 21 19 39 39 H 1.09004 * 109.47571 * 180.02562 * 28 27 25 40 40 H 1.08997 * 109.47353 * 300.00373 * 28 27 25 41 41 H 1.08998 * 109.47207 * 59.99877 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3407 1.5462 -0.1010 5 8 4.0801 0.5907 -0.0942 6 6 3.9079 2.9371 -0.2231 7 6 5.4341 2.8751 -0.1347 8 1 5.8121 2.1652 -0.8704 9 6 6.0092 4.2401 -0.4121 10 1 6.6856 4.3826 -1.2419 11 6 5.6720 5.3069 0.3936 12 7 6.1743 6.4981 0.1518 13 14 4.5017 5.0605 1.8285 14 1 3.1060 5.2833 1.3729 15 1 4.6383 3.6754 2.3463 16 1 4.8306 6.0269 2.9071 17 8 5.8186 2.4534 1.1754 18 6 6.4398 1.2514 1.2782 19 6 7.6899 1.0305 0.6781 20 8 8.3032 2.0181 -0.0192 21 7 8.2596 -0.1580 0.8033 22 6 7.6711 -1.1274 1.4798 23 7 6.5030 -0.9670 2.0586 24 6 5.8576 0.1997 1.9902 25 6 4.5449 0.3735 2.6505 26 8 4.0122 1.4647 2.6649 27 8 3.9408 -0.6786 3.2355 28 6 2.6551 -0.4345 3.8645 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5221 3.5589 0.5848 35 1 3.6166 3.3654 -1.1821 36 1 5.9374 7.2486 0.7187 37 1 8.8834 2.5760 0.5167 38 1 8.1666 -2.0837 1.5598 39 1 2.2799 -1.3623 4.2965 40 1 2.7711 0.3112 4.6510 41 1 1.9493 -0.0690 3.1187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233755837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -196.012667 kcal Electronic energy + Delta-G solvation = -32646.660012 eV Core-core repulsion = 28107.698723 eV Total energy + Delta-G solvation = -4538.961289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.63440 -41.56400 -41.14534 -39.55849 -38.47232 -37.60589 -37.48828 -35.34143 -34.42355 -33.38968 -32.52505 -31.29763 -29.05098 -28.32138 -26.39211 -25.25126 -24.51532 -23.41239 -22.84827 -21.95368 -20.31894 -19.78825 -19.68804 -19.03804 -18.29001 -18.03672 -17.98779 -17.84114 -17.56663 -17.23243 -16.71055 -16.35217 -15.98795 -15.60984 -15.04751 -15.01304 -14.85654 -14.65227 -14.56274 -14.26637 -14.14367 -13.69513 -13.56017 -13.44320 -13.08953 -12.94041 -12.86758 -12.60194 -12.48158 -12.37875 -12.16267 -11.87453 -11.83911 -11.80690 -11.64866 -11.56766 -11.22797 -10.99068 -10.85883 -10.32449 -9.81588 -8.43339 -6.56513 -0.84174 -0.34999 1.05423 1.28164 1.31808 1.39947 1.41546 1.65813 1.75304 2.23669 2.33452 2.37779 2.78082 2.93794 3.06824 3.32171 3.67541 3.71203 3.89530 3.95305 4.02781 4.14562 4.18142 4.21323 4.25122 4.30114 4.32872 4.51570 4.62330 4.76650 4.85642 4.87689 5.03069 5.08434 5.12219 5.27799 5.39318 5.49726 6.11925 6.33647 6.47619 6.55208 6.62763 6.68890 6.84558 7.20224 8.68098 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.007477 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.056610 B = 3743.934122 C = 5296.277282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.477 3.523 5 O -0.534 6.534 6 C -0.130 4.130 7 C 0.217 3.783 8 H 0.043 0.957 9 C -0.515 4.515 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.913 5.913 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.187 1.187 16 H -0.305 1.305 17 O -0.306 6.306 18 C 0.064 3.936 19 C 0.326 3.674 20 O -0.464 6.464 21 N -0.511 5.511 22 C 0.289 3.711 23 N -0.472 5.472 24 C 0.118 3.882 25 C 0.524 3.476 26 O -0.490 6.490 27 O -0.343 6.343 28 C 0.027 3.973 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.271 0.729 37 H 0.423 0.577 38 H 0.254 0.746 39 H 0.142 0.858 40 H 0.064 0.936 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -16.081 5.167 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.323 3.677 5 O -0.425 6.425 6 C -0.167 4.167 7 C 0.163 3.837 8 H 0.062 0.938 9 C -0.551 4.551 10 H 0.078 0.922 11 C -0.145 4.145 12 N -0.550 5.550 13 Si 0.718 3.282 14 H -0.199 1.199 15 H -0.110 1.110 16 H -0.233 1.233 17 O -0.220 6.220 18 C 0.011 3.989 19 C 0.133 3.867 20 O -0.273 6.273 21 N -0.238 5.238 22 C 0.002 3.998 23 N -0.191 5.191 24 C -0.025 4.025 25 C 0.366 3.634 26 O -0.376 6.376 27 O -0.258 6.258 28 C -0.066 4.066 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.285 0.715 38 H 0.270 0.730 39 H 0.160 0.840 40 H 0.083 0.917 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.490 -16.717 4.986 18.984 hybrid contribution -0.402 1.582 0.590 1.735 sum -7.892 -15.135 5.576 17.957 Atomic orbital electron populations 1.21825 0.89718 1.04612 1.03784 1.23298 0.97579 0.79273 1.01980 1.86539 1.24330 1.33828 1.83362 1.23922 0.80639 0.92638 0.70529 1.90568 1.60404 1.43843 1.47645 1.22383 0.97696 0.90717 1.05930 1.20007 0.88431 0.95197 0.80021 0.93837 1.20979 1.29382 0.90145 1.14601 0.92237 1.25572 0.96170 0.94343 0.98415 1.69980 1.44111 1.01140 1.39782 0.86871 0.78963 0.82194 0.80220 1.19889 1.10989 1.23307 1.86650 1.73896 1.28121 1.33298 1.21156 0.92940 0.88790 0.96040 1.20119 0.88869 0.88395 0.89356 1.84745 1.64418 1.41841 1.36310 1.67923 1.38244 1.00963 1.16683 1.25546 0.87492 0.98578 0.88194 1.68380 1.09814 1.20410 1.20494 1.20554 0.93338 0.88766 0.99868 1.20514 0.84532 0.82566 0.75819 1.90940 1.64310 1.26689 1.55614 1.86629 1.36294 1.37173 1.65733 1.23663 0.80252 1.05431 0.97213 0.91346 0.91138 0.87562 0.91467 0.92332 0.89155 0.85099 0.91936 0.71460 0.73049 0.84000 0.91686 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.29 71.98 0.74 -1.71 16 2 C 0.05 1.35 6.21 71.98 0.45 1.80 16 3 O -0.36 -12.47 10.22 -51.44 -0.53 -13.00 16 4 C 0.48 18.93 6.03 71.24 0.43 19.36 16 5 O -0.53 -22.32 11.45 27.18 0.31 -22.01 16 6 C -0.13 -5.54 4.94 29.85 0.15 -5.40 16 7 C 0.22 10.13 1.41 29.85 0.04 10.17 16 8 H 0.04 2.10 6.96 -2.39 -0.02 2.08 16 9 C -0.51 -27.31 9.53 25.60 0.24 -27.07 16 10 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 11 C 0.06 3.20 5.45 84.65 0.46 3.66 16 12 N -0.91 -53.02 13.96 21.45 0.30 -52.72 16 13 Si 0.89 42.92 23.84 68.60 1.64 44.55 16 14 H -0.27 -12.61 6.93 99.48 0.69 -11.92 16 15 H -0.19 -9.02 3.74 99.48 0.37 -8.64 16 16 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 17 O -0.31 -14.04 4.63 -61.06 -0.28 -14.33 16 18 C 0.06 2.64 4.77 23.16 0.11 2.75 16 19 C 0.33 12.33 7.48 85.14 0.64 12.97 16 20 O -0.46 -17.38 12.64 -76.92 -0.97 -18.35 16 21 N -0.51 -16.73 10.44 -312.62 -3.26 -19.99 16 22 C 0.29 8.05 12.26 180.94 2.22 10.27 16 23 N -0.47 -15.60 10.25 -189.24 -1.94 -17.54 16 24 C 0.12 4.56 5.63 41.83 0.24 4.80 16 25 C 0.52 19.92 6.48 70.40 0.46 20.38 16 26 O -0.49 -20.50 11.90 27.88 0.33 -20.17 16 27 O -0.34 -10.74 10.42 -55.99 -0.58 -11.32 16 28 C 0.03 0.59 10.56 113.37 1.20 1.79 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 33 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 34 H 0.09 4.05 3.47 -2.38 -0.01 4.04 16 35 H 0.13 5.10 8.14 -2.39 -0.02 5.08 16 36 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.42 12.41 9.06 -74.06 -0.67 11.74 16 38 H 0.25 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 Total: -1.00 -72.52 344.75 2.46 -70.06 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.08 Total: 21.04 kcal Atomic # 6 Polarization: 46.40 SS G_CDS: 7.37 Total: 53.77 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -4.90 Total: -90.25 kcal Atomic # 8 Polarization: -97.45 SS G_CDS: -1.72 Total: -99.17 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.64 Total: 44.55 kcal Total: -72.52 2.46 -70.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233755837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.952 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds