Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42102 * 109.47114 * 2 1 4 4 C 1.81396 * 103.00349 * 116.39008 * 2 1 3 5 5 C 1.52993 * 109.47494 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47242 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47142 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47336 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00097 * 180.02562 * 8 7 6 10 10 S 1.71193 * 120.00229 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99972 * 180.02562 * 9 8 7 12 12 C 1.39023 * 120.00313 * 184.43001 * 11 9 8 13 13 C 1.38695 * 120.28190 * 312.20908 * 12 11 9 14 14 C 1.38192 * 120.02616 * 180.25718 * 13 12 11 15 15 C 1.38887 * 120.61925 * 359.73947 * 14 13 12 16 16 C 1.36446 * 120.58866 * 0.02562 * 15 14 13 17 17 C 1.40742 * 119.94494 * 359.97438 * 16 15 14 18 18 C 1.41056 * 120.30362 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00012 * 205.40012 * 18 17 16 20 20 C 1.39941 * 119.99710 * 25.40466 * 18 17 16 21 21 N 1.30861 * 120.00395 * 17.18174 * 20 18 17 22 22 Si 1.86799 * 119.99618 * 197.17785 * 20 18 17 23 23 H 1.48495 * 109.47270 * 265.45760 * 22 20 18 24 24 H 1.48500 * 109.47503 * 25.46010 * 22 20 18 25 25 H 1.48507 * 109.47062 * 145.46058 * 22 20 18 26 26 H 1.08997 * 109.47044 * 303.60816 * 1 2 3 27 27 H 1.09000 * 109.47386 * 63.60916 * 1 2 3 28 28 H 1.08996 * 109.47030 * 183.60861 * 1 2 3 29 29 H 1.09005 * 109.47088 * 59.99987 * 4 2 1 30 30 H 1.08997 * 109.47546 * 300.00509 * 4 2 1 31 31 H 1.09007 * 109.47188 * 60.00354 * 5 4 2 32 32 H 1.09005 * 109.47284 * 300.00569 * 5 4 2 33 33 H 1.08999 * 109.47106 * 60.00613 * 6 5 4 34 34 H 1.09000 * 109.47109 * 300.00003 * 6 5 4 35 35 H 1.09005 * 109.46896 * 59.99882 * 7 6 5 36 36 H 1.08991 * 109.47095 * 300.00256 * 7 6 5 37 37 H 0.97002 * 119.99494 * 0.02562 * 8 7 6 38 38 H 0.97006 * 119.99787 * 4.42580 * 11 9 8 39 39 H 1.07996 * 119.98659 * 359.97438 * 13 12 11 40 40 H 1.07998 * 119.69225 * 179.76532 * 14 13 12 41 41 H 1.08008 * 119.70520 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.02923 * 180.02562 * 16 15 14 43 43 H 0.96999 * 120.00212 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2222 -0.7856 1.5833 5 6 3.7423 -0.8628 1.7374 6 6 4.0865 -1.5260 3.0726 7 6 5.6068 -1.6027 3.2270 8 7 5.9365 -2.2371 4.5057 9 6 7.2253 -2.4118 4.8589 10 16 8.4774 -1.8928 3.8130 11 7 7.5285 -2.9959 6.0350 12 6 8.8545 -3.0932 6.4415 13 6 9.8228 -3.5571 5.5636 14 6 11.1384 -3.6567 5.9749 15 6 11.5064 -3.2906 7.2631 16 6 10.5753 -2.8265 8.1458 17 6 9.2285 -2.7152 7.7526 18 6 8.2595 -2.2369 8.6592 19 1 7.2237 -2.5188 8.5410 20 6 8.6404 -1.3969 9.7116 21 7 9.7969 -0.7856 9.6753 22 14 7.4978 -1.1482 11.1684 23 1 6.6761 0.0694 10.9508 24 1 6.6071 -2.3284 11.3061 25 1 8.3021 -0.9878 12.4065 26 1 -0.3633 0.5688 0.8559 27 1 -0.3634 0.4568 -0.9205 28 1 -0.3633 -1.0256 0.0647 29 1 1.8032 -1.7916 1.6084 30 1 1.8032 -0.1972 2.3996 31 1 4.1617 0.1430 1.7122 32 1 4.1609 -1.4515 0.9211 33 1 3.6674 -2.5319 3.0973 34 1 3.6680 -0.9377 3.8891 35 1 6.0257 -0.5966 3.2024 36 1 6.0258 -2.1907 2.4106 37 1 5.2270 -2.5315 5.0981 38 1 6.8216 -3.3485 6.5979 39 1 9.5479 -3.8450 4.5597 40 1 11.8874 -4.0223 5.2881 41 1 12.5390 -3.3741 7.5688 42 1 10.8715 -2.5440 9.1452 43 1 10.0610 -0.2036 10.4050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246948236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -8.156623 kcal Electronic energy + Delta-G solvation = -23624.594580 eV Core-core repulsion = 20115.118176 eV Total energy + Delta-G solvation = -3509.476403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.09342 -37.57364 -36.05172 -35.76389 -33.95637 -33.66056 -30.00972 -29.61528 -29.25722 -27.99879 -25.33373 -24.16032 -23.19695 -21.74020 -20.95681 -20.52897 -17.96044 -17.80949 -17.46910 -16.89571 -16.29215 -15.65077 -15.53331 -15.20711 -15.01844 -14.83209 -14.63055 -14.19085 -14.11579 -13.61232 -13.26213 -12.89155 -12.83989 -12.75121 -12.57864 -12.33109 -12.11015 -11.83522 -11.63339 -11.54987 -11.27788 -11.14935 -11.03078 -10.86926 -10.54800 -10.47840 -10.43118 -9.83549 -9.75711 -9.29657 -8.95645 -8.63962 -7.57243 -7.43632 -7.00905 -6.89001 -6.23803 -4.47908 1.11227 1.93080 2.22193 2.54944 2.73643 2.95967 2.98350 3.02700 3.21110 3.28295 3.42067 3.78809 4.17557 4.36126 4.48197 4.56357 4.66380 4.77022 4.86005 4.92026 5.02785 5.35937 5.42177 5.45759 5.52009 5.55194 5.75839 5.93229 5.98897 6.34662 6.39849 6.54215 6.62026 6.81651 6.94620 7.13706 7.24648 7.33711 7.57454 7.69140 7.96334 8.04372 8.16068 8.20957 8.51352 8.69548 8.86321 10.04501 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013882 B = 0.002234 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.476942 B =12529.914403 C =14014.181964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 S 1.244 4.756 3 O -0.850 6.850 4 C -0.447 4.447 5 C -0.096 4.096 6 C -0.127 4.127 7 C 0.129 3.871 8 N -0.701 5.701 9 C 0.552 3.448 10 S -0.658 6.658 11 N -0.578 5.578 12 C -0.026 4.026 13 C -0.025 4.025 14 C -0.237 4.237 15 C -0.093 4.093 16 C -0.162 4.162 17 C 0.126 3.874 18 C -0.464 4.464 19 H 0.070 0.930 20 C 0.079 3.921 21 N -0.780 5.780 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.261 1.261 25 H -0.273 1.273 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.391 0.609 38 H 0.394 0.606 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 -5.235 -12.418 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.442 4.558 3 O -0.845 6.845 4 C -0.584 4.584 5 C -0.135 4.135 6 C -0.167 4.167 7 C 0.005 3.995 8 N -0.333 5.333 9 C 0.192 3.808 10 S -0.530 6.530 11 N -0.196 5.196 12 C -0.120 4.120 13 C -0.047 4.047 14 C -0.258 4.258 15 C -0.112 4.112 16 C -0.182 4.182 17 C 0.121 3.879 18 C -0.494 4.494 19 H 0.088 0.912 20 C -0.141 4.141 21 N -0.405 5.405 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.185 1.185 25 H -0.198 1.198 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.226 0.774 38 H 0.230 0.770 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.685 -4.265 -13.764 22.046 hybrid contribution -2.794 0.994 3.693 4.737 sum -19.479 -3.271 -10.071 22.172 Atomic orbital electron populations 1.27666 1.22163 1.07925 1.07213 1.70529 0.86127 0.99204 0.99913 1.93164 1.73194 1.36640 1.81538 1.27683 1.02773 1.10102 1.17859 1.21044 0.92053 1.02418 0.98024 1.21823 0.95150 1.01581 0.98120 1.21582 0.94009 0.99723 0.84185 1.44769 1.04080 1.62005 1.22473 1.22276 0.88380 0.82044 0.88051 1.93108 1.40461 1.70162 1.49282 1.41738 1.09466 1.52038 1.16310 1.17272 0.81172 1.18299 0.95221 1.20679 0.92477 0.94365 0.97129 1.20236 0.95190 1.13499 0.96837 1.20523 0.97594 0.98874 0.94229 1.20847 0.92754 1.04760 0.99855 1.17403 0.93197 0.88023 0.89237 1.19249 0.95035 1.26000 1.09076 0.91161 1.25862 0.95610 0.93778 0.98831 1.69843 1.20293 1.19662 1.30663 0.86334 0.80668 0.79462 0.80485 1.19643 1.18509 1.19768 0.90273 0.87678 0.86988 0.86440 0.89696 0.90769 0.89960 0.91063 0.91488 0.89930 0.89776 0.77356 0.76979 0.86831 0.88988 0.89303 0.86242 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.00 10.74 101.05 1.09 -0.92 16 2 S 1.24 6.42 13.80 -107.50 -1.48 4.94 16 3 O -0.85 -11.10 18.14 -35.23 -0.64 -11.74 16 4 C -0.45 -2.32 5.92 37.15 0.22 -2.10 16 5 C -0.10 -0.68 5.22 -26.73 -0.14 -0.82 16 6 C -0.13 -1.00 5.33 -26.73 -0.14 -1.15 16 7 C 0.13 1.53 5.13 -4.04 -0.02 1.50 16 8 N -0.70 -9.49 5.56 -62.03 -0.34 -9.83 16 9 C 0.55 10.41 7.84 -86.92 -0.68 9.73 16 10 S -0.66 -15.16 25.03 -107.50 -2.69 -17.85 16 11 N -0.58 -11.28 4.78 -11.02 -0.05 -11.33 16 12 C -0.03 -0.61 5.89 -83.19 -0.49 -1.10 16 13 C -0.02 -0.59 7.87 -39.43 -0.31 -0.90 16 14 C -0.24 -5.49 10.04 -39.36 -0.39 -5.88 16 15 C -0.09 -2.19 9.96 -39.99 -0.40 -2.59 16 16 C -0.16 -4.11 8.63 -39.28 -0.34 -4.45 16 17 C 0.13 3.19 5.58 -106.65 -0.59 2.60 16 18 C -0.46 -11.43 8.67 -37.88 -0.33 -11.76 16 19 H 0.07 1.59 7.07 -52.49 -0.37 1.22 16 20 C 0.08 1.89 5.14 -17.33 -0.09 1.80 16 21 N -0.78 -19.72 10.98 55.55 0.61 -19.11 16 22 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.12 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 36 H 0.08 1.03 7.99 -51.93 -0.42 0.61 16 37 H 0.39 4.07 8.49 -40.82 -0.35 3.72 16 38 H 0.39 6.48 8.06 -40.82 -0.33 6.15 16 39 H 0.11 2.65 6.35 -50.44 -0.32 2.33 16 40 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 41 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.12 3.10 6.20 -52.49 -0.33 2.77 16 43 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -37.23 381.01 -12.82 -50.05 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.31 Total: 12.42 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.62 Total: -16.03 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.21 Total: -40.28 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.64 Total: -11.74 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -4.17 Total: -12.91 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.23 -12.82 -50.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246948236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.895 kcal (2) G-P(sol) polarization free energy of solvation -37.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds