Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42095 * 109.46935 * 2 1 4 4 C 1.81402 * 102.99947 * 116.38669 * 2 1 3 5 5 C 1.52999 * 109.46806 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46907 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46699 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99861 * 180.02562 * 8 7 6 10 10 S 1.71202 * 119.99675 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00165 * 180.02562 * 9 8 7 12 12 C 1.39891 * 119.99871 * 174.28021 * 11 9 8 13 13 C 1.39305 * 119.94850 * 139.46271 * 12 11 9 14 14 C 1.38483 * 120.43156 * 179.97438 * 13 12 11 15 15 C 1.37691 * 120.32074 * 359.97438 * 14 13 12 16 16 C 1.40748 * 119.88725 * 0.02562 * 15 14 13 17 17 C 1.41400 * 120.21077 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00256 * 205.08127 * 17 16 15 19 19 C 1.39931 * 119.99685 * 25.08324 * 17 16 15 20 20 N 1.30829 * 120.00492 * 16.89069 * 19 17 16 21 21 Si 1.86808 * 119.99918 * 196.88940 * 19 17 16 22 22 H 1.48502 * 109.46846 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47007 * 120.00042 * 21 19 17 24 24 H 1.48494 * 109.47015 * 240.00136 * 21 19 17 25 25 C 1.38250 * 119.95260 * 319.18444 * 12 11 9 26 26 H 1.09003 * 109.47184 * 63.61475 * 1 2 3 27 27 H 1.09003 * 109.47122 * 183.61145 * 1 2 3 28 28 H 1.08999 * 109.47086 * 303.60997 * 1 2 3 29 29 H 1.08993 * 109.47257 * 299.99698 * 4 2 1 30 30 H 1.08998 * 109.46787 * 60.00530 * 4 2 1 31 31 H 1.09004 * 109.47248 * 299.99555 * 5 4 2 32 32 H 1.08992 * 109.47691 * 60.00364 * 5 4 2 33 33 H 1.08996 * 109.46756 * 300.00005 * 6 5 4 34 34 H 1.08998 * 109.46932 * 60.00330 * 6 5 4 35 35 H 1.08996 * 109.47416 * 299.99601 * 7 6 5 36 36 H 1.09001 * 109.47556 * 60.00398 * 7 6 5 37 37 H 0.96995 * 119.99941 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99334 * 354.27330 * 11 9 8 39 39 H 1.08005 * 119.78358 * 359.95586 * 13 12 11 40 40 H 1.07996 * 119.84501 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.05861 * 179.97438 * 15 14 13 42 42 H 0.96993 * 120.00196 * 179.97438 * 20 19 17 43 43 H 1.08006 * 120.15581 * 0.02692 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7855 1.5834 5 6 3.7423 -0.8616 1.7381 6 6 4.0865 -1.5247 3.0733 7 6 5.6067 -1.6013 3.2277 8 7 5.9363 -2.2357 4.5065 9 6 7.2252 -2.4104 4.8598 10 16 8.4772 -1.8915 3.8137 11 7 7.5284 -2.9945 6.0359 12 6 8.8604 -3.2845 6.3500 13 6 9.3323 -3.0710 7.6432 14 6 10.6489 -3.3551 7.9652 15 6 11.5064 -3.8527 7.0097 16 6 11.0438 -4.0736 5.6989 17 6 11.9186 -4.5839 4.7122 18 1 11.7293 -4.3851 3.6677 19 6 13.0296 -5.3467 5.0891 20 7 13.0899 -5.8665 6.2881 21 14 14.4267 -5.6226 3.8801 22 1 14.1176 -4.9345 2.6010 23 1 15.6860 -5.0752 4.4456 24 1 14.5868 -7.0780 3.6325 25 6 9.7049 -3.7880 5.3781 26 1 -0.3634 0.4567 -0.9206 27 1 -0.3633 -1.0256 0.0647 28 1 -0.3633 0.5688 0.8559 29 1 1.8032 -0.1970 2.3996 30 1 1.8032 -1.7915 1.6084 31 1 4.1616 -1.4500 0.9219 32 1 4.1609 0.1445 1.7132 33 1 3.6671 -0.9368 3.8897 34 1 3.6680 -2.5309 3.0978 35 1 6.0257 -2.1895 2.4113 36 1 6.0257 -0.5953 3.2031 37 1 5.2269 -2.5301 5.0989 38 1 6.8230 -3.2137 6.6646 39 1 8.6672 -2.6810 8.3995 40 1 11.0047 -3.1863 8.9708 41 1 12.5324 -4.0724 7.2654 42 1 13.8598 -6.3955 6.5492 43 1 9.3389 -3.9577 4.3762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246955262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -4.146747 kcal Electronic energy + Delta-G solvation = -23227.568621 eV Core-core repulsion = 19718.266099 eV Total energy + Delta-G solvation = -3509.302522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.24832 -37.60758 -36.12158 -35.93652 -34.32049 -33.07797 -29.94261 -29.79976 -29.32400 -27.78273 -25.39001 -24.26235 -23.35516 -21.82737 -20.96179 -20.56531 -18.18420 -17.99954 -17.70743 -16.40076 -16.32181 -15.71332 -15.43515 -15.20876 -15.06637 -14.85557 -14.68303 -14.44613 -14.20841 -13.60100 -13.32074 -12.97805 -12.93069 -12.90413 -12.55612 -12.24380 -12.17790 -11.84207 -11.66372 -11.55407 -11.18597 -11.07952 -10.94552 -10.67788 -10.57961 -10.49881 -10.40278 -9.94952 -9.52617 -9.19145 -9.03855 -8.69140 -7.59950 -7.42583 -7.03881 -6.68635 -6.27749 -4.23119 1.05378 1.64014 2.16643 2.37108 2.82672 2.95307 3.15178 3.16386 3.23583 3.27107 3.35519 3.85126 4.04236 4.25853 4.39672 4.61256 4.68632 4.71355 4.75197 4.82109 4.90871 5.27783 5.30721 5.41013 5.41718 5.64075 5.74318 5.81034 5.85196 6.12455 6.27719 6.36363 6.48243 6.97195 7.06330 7.13000 7.16544 7.32622 7.59344 7.71956 7.90148 8.06938 8.17437 8.36117 8.73094 8.99355 9.03703 10.28309 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.001858 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.738854 B =15064.644388 C =16107.517204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 S 1.245 4.755 3 O -0.850 6.850 4 C -0.448 4.448 5 C -0.097 4.097 6 C -0.127 4.127 7 C 0.126 3.874 8 N -0.697 5.697 9 C 0.550 3.450 10 S -0.615 6.615 11 N -0.617 5.617 12 C 0.125 3.875 13 C -0.244 4.244 14 C -0.101 4.101 15 C -0.159 4.159 16 C 0.114 3.886 17 C -0.450 4.450 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.799 5.799 21 Si 0.906 3.094 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.276 1.276 25 C -0.157 4.157 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.391 0.609 38 H 0.393 0.607 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.278 0.722 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.893 2.678 -7.945 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.443 4.557 3 O -0.845 6.845 4 C -0.585 4.585 5 C -0.136 4.136 6 C -0.166 4.166 7 C 0.002 3.998 8 N -0.329 5.329 9 C 0.192 3.808 10 S -0.488 6.488 11 N -0.239 5.239 12 C 0.034 3.966 13 C -0.266 4.266 14 C -0.120 4.120 15 C -0.179 4.179 16 C 0.110 3.890 17 C -0.480 4.480 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.425 5.425 21 Si 0.731 3.269 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.202 1.202 25 C -0.179 4.179 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.226 0.774 38 H 0.229 0.771 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.274 3.293 -9.320 24.369 hybrid contribution -1.756 0.468 2.673 3.232 sum -24.030 3.761 -6.647 25.215 Atomic orbital electron populations 1.27668 1.22110 1.07960 1.07227 1.70592 0.86144 0.99181 0.99772 1.93160 1.73221 1.36659 1.81481 1.27686 1.02684 1.10157 1.17927 1.21049 0.92151 1.02412 0.97997 1.21821 0.94917 1.01695 0.98193 1.21659 0.94261 0.99802 0.84100 1.44914 1.04010 1.61634 1.22306 1.22406 0.88856 0.81808 0.87696 1.93467 1.39629 1.66237 1.49420 1.42409 1.09766 1.56218 1.15484 1.17201 0.80692 1.03365 0.95339 1.19978 0.96902 1.15230 0.94442 1.20400 0.93058 1.00735 0.97827 1.21401 0.99566 1.03025 0.93885 1.17434 0.90143 0.88821 0.92553 1.19615 1.06002 1.27442 0.94959 0.90075 1.25895 0.98855 0.93729 0.95750 1.69824 1.28675 1.24473 1.19563 0.86289 0.80611 0.78435 0.81593 1.18238 1.19802 1.20173 1.21192 0.93597 1.04797 0.98332 0.87637 0.86954 0.90291 0.89754 0.86407 0.89826 0.90751 0.91566 0.90949 0.89370 0.89761 0.77371 0.77090 0.89613 0.89021 0.86243 0.91107 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.69 10.74 101.05 1.09 -0.61 16 2 S 1.25 5.60 13.80 -107.50 -1.48 4.11 16 3 O -0.85 -10.44 18.14 -35.23 -0.64 -11.08 16 4 C -0.45 -1.91 5.92 37.16 0.22 -1.69 16 5 C -0.10 -0.59 5.22 -26.73 -0.14 -0.73 16 6 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 7 C 0.13 1.29 5.13 -4.04 -0.02 1.27 16 8 N -0.70 -7.98 5.56 -62.03 -0.34 -8.33 16 9 C 0.55 9.31 7.74 -86.91 -0.67 8.64 16 10 S -0.61 -13.66 24.97 -107.50 -2.68 -16.35 16 11 N -0.62 -10.49 5.33 -11.45 -0.06 -10.55 16 12 C 0.13 2.76 5.93 -83.78 -0.50 2.26 16 13 C -0.24 -5.32 9.97 -39.09 -0.39 -5.71 16 14 C -0.10 -2.35 10.02 -39.69 -0.40 -2.75 16 15 C -0.16 -4.16 8.69 -38.83 -0.34 -4.50 16 16 C 0.11 3.11 5.57 -106.85 -0.59 2.51 16 17 C -0.45 -12.37 9.05 -37.75 -0.34 -12.71 16 18 H 0.08 2.23 7.90 -52.49 -0.41 1.81 16 19 C 0.07 1.91 5.15 -17.35 -0.09 1.82 16 20 N -0.80 -20.81 10.94 55.55 0.61 -20.20 16 21 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 22 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.16 -3.97 7.59 -38.68 -0.29 -4.26 16 26 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.11 0.09 8.14 -51.92 -0.42 -0.33 16 28 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 1.00 7.99 -51.93 -0.42 0.58 16 36 H 0.08 1.02 7.99 -51.93 -0.41 0.60 16 37 H 0.39 3.11 8.49 -40.82 -0.35 2.76 16 38 H 0.39 5.03 8.84 -40.82 -0.36 4.67 16 39 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 42 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 43 H 0.12 3.06 6.15 -46.94 -0.29 2.77 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -38.27 382.92 -12.83 -51.09 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.35 Total: 8.63 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.61 Total: -17.41 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.20 Total: -39.08 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.64 Total: -11.08 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -4.17 Total: -12.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.27 -12.83 -51.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246955262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.945 kcal (2) G-P(sol) polarization free energy of solvation -38.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds