Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42095 * 109.46935 * 2 1 4 4 C 1.81402 * 102.99947 * 116.38669 * 2 1 3 5 5 C 1.52999 * 109.46806 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46907 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46907 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46699 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99861 * 180.02562 * 8 7 6 10 10 S 1.71202 * 119.99675 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00165 * 180.02562 * 9 8 7 12 12 C 1.39891 * 119.99871 * 174.28021 * 11 9 8 13 13 C 1.39305 * 119.94850 * 139.46271 * 12 11 9 14 14 C 1.38483 * 120.43156 * 179.97438 * 13 12 11 15 15 C 1.37691 * 120.32074 * 359.97438 * 14 13 12 16 16 C 1.40748 * 119.88725 * 0.02562 * 15 14 13 17 17 C 1.41400 * 120.21077 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00256 * 205.08127 * 17 16 15 19 19 C 1.39931 * 119.99685 * 25.08324 * 17 16 15 20 20 N 1.30829 * 120.00492 * 16.89069 * 19 17 16 21 21 Si 1.86808 * 119.99918 * 196.88940 * 19 17 16 22 22 H 1.48502 * 109.46846 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47007 * 120.00042 * 21 19 17 24 24 H 1.48494 * 109.47015 * 240.00136 * 21 19 17 25 25 C 1.38250 * 119.95260 * 319.18444 * 12 11 9 26 26 H 1.09003 * 109.47184 * 63.61475 * 1 2 3 27 27 H 1.09003 * 109.47122 * 183.61145 * 1 2 3 28 28 H 1.08999 * 109.47086 * 303.60997 * 1 2 3 29 29 H 1.08993 * 109.47257 * 299.99698 * 4 2 1 30 30 H 1.08998 * 109.46787 * 60.00530 * 4 2 1 31 31 H 1.09004 * 109.47248 * 299.99555 * 5 4 2 32 32 H 1.08992 * 109.47691 * 60.00364 * 5 4 2 33 33 H 1.08996 * 109.46756 * 300.00005 * 6 5 4 34 34 H 1.08998 * 109.46932 * 60.00330 * 6 5 4 35 35 H 1.08996 * 109.47416 * 299.99601 * 7 6 5 36 36 H 1.09001 * 109.47556 * 60.00398 * 7 6 5 37 37 H 0.96995 * 119.99941 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99334 * 354.27330 * 11 9 8 39 39 H 1.08005 * 119.78358 * 359.95586 * 13 12 11 40 40 H 1.07996 * 119.84501 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.05861 * 179.97438 * 15 14 13 42 42 H 0.96993 * 120.00196 * 179.97438 * 20 19 17 43 43 H 1.08006 * 120.15581 * 0.02692 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7855 1.5834 5 6 3.7423 -0.8616 1.7381 6 6 4.0865 -1.5247 3.0733 7 6 5.6067 -1.6013 3.2277 8 7 5.9363 -2.2357 4.5065 9 6 7.2252 -2.4104 4.8598 10 16 8.4772 -1.8915 3.8137 11 7 7.5284 -2.9945 6.0359 12 6 8.8604 -3.2845 6.3500 13 6 9.3323 -3.0710 7.6432 14 6 10.6489 -3.3551 7.9652 15 6 11.5064 -3.8527 7.0097 16 6 11.0438 -4.0736 5.6989 17 6 11.9186 -4.5839 4.7122 18 1 11.7293 -4.3851 3.6677 19 6 13.0296 -5.3467 5.0891 20 7 13.0899 -5.8665 6.2881 21 14 14.4267 -5.6226 3.8801 22 1 14.1176 -4.9345 2.6010 23 1 15.6860 -5.0752 4.4456 24 1 14.5868 -7.0780 3.6325 25 6 9.7049 -3.7880 5.3781 26 1 -0.3634 0.4567 -0.9206 27 1 -0.3633 -1.0256 0.0647 28 1 -0.3633 0.5688 0.8559 29 1 1.8032 -0.1970 2.3996 30 1 1.8032 -1.7915 1.6084 31 1 4.1616 -1.4500 0.9219 32 1 4.1609 0.1445 1.7132 33 1 3.6671 -0.9368 3.8897 34 1 3.6680 -2.5309 3.0978 35 1 6.0257 -2.1895 2.4113 36 1 6.0257 -0.5953 3.2031 37 1 5.2269 -2.5301 5.0989 38 1 6.8230 -3.2137 6.6646 39 1 8.6672 -2.6810 8.3995 40 1 11.0047 -3.1863 8.9708 41 1 12.5324 -4.0724 7.2654 42 1 13.8598 -6.3955 6.5492 43 1 9.3389 -3.9577 4.3762 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246955262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -31.133077 kcal Electronic energy + Delta-G solvation = -23228.738837 eV Core-core repulsion = 19718.266099 eV Total energy + Delta-G solvation = -3510.472737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75656 -39.06369 -37.19597 -36.77688 -35.58855 -34.66625 -31.75388 -30.87050 -29.78068 -29.17847 -27.28724 -25.41905 -24.49226 -22.79342 -22.70900 -22.02173 -19.84917 -19.27132 -18.34478 -17.91468 -17.18297 -17.00027 -16.59243 -16.39601 -16.18842 -16.07314 -15.93943 -15.50314 -15.27859 -14.72640 -14.63503 -14.14262 -13.88779 -13.67093 -13.55411 -13.45764 -13.20226 -12.99524 -12.86387 -12.74914 -12.63206 -12.31423 -12.23894 -12.17592 -12.13765 -11.80604 -11.61330 -11.37567 -11.05231 -11.00202 -10.55042 -9.44613 -9.16238 -9.14663 -8.83270 -8.59499 -8.05564 -6.25266 0.13641 0.67049 0.91040 1.02680 1.26766 1.39643 1.50632 1.54420 1.61121 1.83522 2.25902 2.61717 2.76964 2.92967 3.67914 3.79206 3.93100 4.17034 4.25681 4.28133 4.36121 4.49240 4.53115 4.61838 4.69967 4.73607 4.77590 4.85837 4.91558 5.12236 5.15015 5.16742 5.21616 5.21773 5.28128 5.34851 5.43548 5.74989 5.90209 5.99476 6.11749 6.19053 6.36563 6.56642 6.76784 7.02194 7.07195 8.39484 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.001858 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.738854 B =15064.644388 C =16107.517204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.279 4.721 3 O -0.936 6.936 4 C -0.438 4.438 5 C -0.105 4.105 6 C -0.113 4.113 7 C 0.122 3.878 8 N -0.658 5.658 9 C 0.577 3.423 10 S -0.726 6.726 11 N -0.604 5.604 12 C 0.134 3.866 13 C -0.230 4.230 14 C -0.104 4.104 15 C -0.183 4.183 16 C 0.082 3.918 17 C -0.493 4.493 18 H 0.061 0.939 19 C 0.038 3.962 20 N -0.825 5.825 21 Si 0.975 3.025 22 H -0.268 1.268 23 H -0.262 1.262 24 H -0.261 1.261 25 C -0.173 4.173 26 H 0.107 0.893 27 H 0.149 0.851 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.418 0.582 38 H 0.421 0.579 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.287 0.713 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.167 1.427 -6.637 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.481 4.519 3 O -0.932 6.932 4 C -0.576 4.576 5 C -0.144 4.144 6 C -0.152 4.152 7 C -0.002 4.002 8 N -0.288 5.288 9 C 0.215 3.785 10 S -0.600 6.600 11 N -0.229 5.229 12 C 0.042 3.958 13 C -0.252 4.252 14 C -0.123 4.123 15 C -0.203 4.203 16 C 0.079 3.921 17 C -0.523 4.523 18 H 0.079 0.921 19 C -0.176 4.176 20 N -0.452 5.452 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.186 1.186 24 H -0.186 1.186 25 C -0.195 4.195 26 H 0.126 0.874 27 H 0.167 0.833 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.262 0.738 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.643 2.049 -7.993 26.938 hybrid contribution -1.066 0.865 2.361 2.732 sum -26.709 2.914 -5.631 27.451 Atomic orbital electron populations 1.27609 1.19910 1.10178 1.06783 1.69615 0.86447 0.96242 0.99567 1.93032 1.76123 1.40439 1.83611 1.27599 1.01309 1.12104 1.16632 1.21111 0.93593 1.01069 0.98658 1.21761 0.91343 1.03567 0.98506 1.21834 0.97256 0.98228 0.82871 1.44860 1.02476 1.58722 1.22728 1.21728 0.89434 0.80989 0.86394 1.93796 1.43175 1.70476 1.52547 1.41988 1.08792 1.56101 1.16001 1.17157 0.82318 1.01546 0.94820 1.20405 0.96813 1.12965 0.94974 1.20748 0.93464 0.99528 0.98524 1.21353 0.99566 1.05031 0.94373 1.17753 0.91237 0.89832 0.93326 1.19691 1.08424 1.29961 0.94237 0.92078 1.26606 1.00483 0.92842 0.97655 1.69847 1.29648 1.24798 1.20872 0.85266 0.77463 0.78888 0.78733 1.19171 1.18642 1.18581 1.21134 0.93762 1.06204 0.98423 0.87445 0.83288 0.91627 0.90616 0.82240 0.88113 0.93776 0.90827 0.87975 0.90247 0.91849 0.74163 0.73795 0.85353 0.86104 0.87928 0.90201 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.15 10.74 113.37 1.22 -0.93 16 2 S 1.28 10.13 13.80 -56.49 -0.78 9.35 16 3 O -0.94 -24.09 18.14 -148.98 -2.70 -26.79 16 4 C -0.44 -2.44 5.92 71.98 0.43 -2.02 16 5 C -0.11 -1.08 5.22 30.60 0.16 -0.92 16 6 C -0.11 -1.07 5.33 30.60 0.16 -0.90 16 7 C 0.12 2.29 5.13 86.38 0.44 2.74 16 8 N -0.66 -13.10 5.56 -350.15 -1.95 -15.04 16 9 C 0.58 18.67 7.74 179.05 1.39 20.06 16 10 S -0.73 -33.48 24.97 -56.49 -1.41 -34.89 16 11 N -0.60 -18.88 5.33 -190.13 -1.01 -19.90 16 12 C 0.13 5.75 5.93 38.11 0.23 5.98 16 13 C -0.23 -9.40 9.97 22.58 0.23 -9.18 16 14 C -0.10 -4.69 10.02 22.20 0.22 -4.47 16 15 C -0.18 -9.84 8.69 22.75 0.20 -9.64 16 16 C 0.08 4.67 5.57 -21.31 -0.12 4.55 16 17 C -0.49 -28.78 9.05 23.46 0.21 -28.56 16 18 H 0.06 3.65 7.90 -2.91 -0.02 3.63 16 19 C 0.04 2.04 5.15 85.25 0.44 2.48 16 20 N -0.83 -44.19 10.94 21.82 0.24 -43.95 16 21 Si 0.98 40.98 29.59 68.60 2.03 43.01 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 C -0.17 -9.00 7.59 22.85 0.17 -8.83 16 26 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.15 -0.43 8.14 -2.39 -0.02 -0.44 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.16 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 36 H 0.06 1.54 7.99 -2.39 -0.02 1.52 16 37 H 0.42 4.54 8.49 -92.71 -0.79 3.75 16 38 H 0.42 8.78 8.84 -92.71 -0.82 7.96 16 39 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 42 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 43 H 0.10 5.54 6.15 -6.43 -0.04 5.50 16 Total: -1.00 -92.29 382.92 -0.81 -93.10 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.60 Total: 24.78 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 5.37 Total: -29.66 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.72 Total: -78.89 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -2.70 Total: -26.79 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: -23.36 SS G_CDS: -2.19 Total: -25.55 kcal Total: -92.29 -0.81 -93.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246955262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.965 kcal (2) G-P(sol) polarization free energy of solvation -92.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds