Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99798 * 2 1 4 4 C 1.53008 * 109.47079 * 274.72247 * 3 2 1 5 5 H 1.08999 * 112.73747 * 316.18380 * 4 3 2 6 6 C 1.53494 * 113.46382 * 87.00821 * 4 3 2 7 7 C 1.53494 * 83.34220 * 140.84836 * 6 4 3 8 8 N 1.47060 * 87.98692 * 333.92773 * 7 6 4 9 9 C 1.36938 * 136.06171 * 207.15615 * 8 7 6 10 10 H 1.07991 * 120.00227 * 174.74185 * 9 8 7 11 11 C 1.38812 * 119.99820 * 354.74062 * 9 8 7 12 12 N 1.31625 * 119.99851 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00071 * 179.97438 * 11 9 8 14 14 H 1.48492 * 109.46912 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47020 * 119.99959 * 13 11 9 16 16 H 1.48499 * 109.46975 * 239.99795 * 13 11 9 17 17 C 1.34779 * 120.00069 * 180.02562 * 2 1 3 18 18 O 1.21276 * 119.99778 * 175.01867 * 17 2 1 19 19 C 1.50703 * 119.99795 * 355.01608 * 17 2 1 20 20 C 1.50699 * 109.46997 * 180.02562 * 19 17 2 21 21 C 1.38247 * 119.98174 * 264.72953 * 20 19 17 22 22 C 1.38180 * 120.04087 * 179.72574 * 21 20 19 23 23 C 1.38494 * 119.99770 * 0.54365 * 22 21 20 24 24 F 1.35098 * 120.01711 * 179.74519 * 23 22 21 25 25 C 1.38414 * 119.96297 * 359.72813 * 23 22 21 26 26 C 1.38335 * 119.95889 * 359.97438 * 25 23 22 27 27 Cl 1.73610 * 119.99748 * 180.02562 * 26 25 23 28 28 H 1.08992 * 109.47191 * 270.00249 * 1 2 3 29 29 H 1.08999 * 109.47056 * 30.00215 * 1 2 3 30 30 H 1.08997 * 109.47076 * 150.00009 * 1 2 3 31 31 H 1.08997 * 109.47283 * 34.72652 * 3 2 1 32 32 H 1.09006 * 109.46831 * 154.73004 * 3 2 1 33 33 H 1.09003 * 114.20148 * 254.43397 * 6 4 3 34 34 H 1.08997 * 114.21088 * 27.25404 * 6 4 3 35 35 H 1.09005 * 113.46245 * 219.14769 * 7 6 4 36 36 H 1.09000 * 113.52501 * 88.72113 * 7 6 4 37 37 H 0.97002 * 119.99718 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.46870 * 300.00116 * 19 17 2 39 39 H 1.09000 * 109.46955 * 60.00223 * 19 17 2 40 40 H 1.08007 * 119.97976 * 359.97438 * 21 20 19 41 41 H 1.08000 * 120.00174 * 180.25395 * 22 21 20 42 42 H 1.07996 * 120.01929 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3496 1.7698 -1.4377 5 1 2.6331 0.9787 -2.1318 6 6 1.1604 2.6116 -1.9206 7 6 2.2566 3.4514 -2.5907 8 7 3.1832 2.9760 -1.5524 9 6 4.3210 3.4487 -0.9547 10 1 4.7647 2.9062 -0.1331 11 6 4.9040 4.6253 -1.4049 12 7 4.3634 5.2863 -2.4066 13 14 6.4557 5.2705 -0.5892 14 1 6.8589 4.3508 0.5046 15 1 7.5457 5.3531 -1.5944 16 1 6.1955 6.6210 -0.0291 17 6 2.1389 -1.1672 -0.0005 18 8 3.3482 -1.1691 -0.0917 19 6 1.3897 -2.4699 0.1123 20 6 2.3681 -3.6158 0.0885 21 6 2.6441 -4.2640 -1.1010 22 6 3.5453 -5.3111 -1.1253 23 6 4.1642 -5.7193 0.0445 24 9 5.0415 -6.7464 0.0222 25 6 3.8836 -5.0741 1.2365 26 6 2.9858 -4.0219 1.2578 27 17 2.6336 -3.2115 2.7522 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6477 2.0057 0.5854 32 1 3.1840 1.1187 0.4387 33 1 0.5024 2.0957 -2.6199 34 1 0.6257 3.1284 -1.1237 35 1 2.0691 4.5243 -2.5470 36 1 2.5152 3.1094 -3.5928 37 1 4.7706 6.1086 -2.7210 38 1 0.8318 -2.4883 1.0486 39 1 0.6979 -2.5648 -0.7248 40 1 2.1581 -3.9490 -2.0127 41 1 3.7636 -5.8144 -2.0556 42 1 4.3660 -5.3913 2.1492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264370343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = 2.533922 kcal Electronic energy + Delta-G solvation = -26902.815940 eV Core-core repulsion = 22825.546231 eV Total energy + Delta-G solvation = -4077.269709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20198 -40.28018 -39.10504 -37.90931 -36.70430 -35.17203 -32.97472 -32.12980 -31.26256 -29.06983 -27.90338 -27.35178 -25.94015 -23.47688 -23.43179 -22.73365 -21.66179 -19.29748 -18.99656 -18.10472 -17.12856 -17.00380 -16.67578 -16.33144 -15.89206 -15.54689 -15.38573 -14.90109 -14.61321 -14.22117 -14.10258 -13.94557 -13.58717 -13.53145 -13.00123 -12.96367 -12.72256 -12.48316 -12.22469 -12.12763 -11.79942 -11.60387 -11.54256 -11.45424 -11.15849 -11.10834 -10.87964 -10.75155 -10.38581 -9.83325 -9.82883 -9.69649 -9.40377 -9.25784 -8.83286 -8.76318 -8.27984 -6.83240 -5.73075 -3.04545 0.67926 0.77878 1.78666 2.78532 2.97398 3.32533 3.42672 3.49007 3.51445 3.92018 4.27219 4.36846 4.50882 4.57019 4.65586 4.78363 5.02867 5.08778 5.17950 5.23163 5.31254 5.37862 5.50227 5.53991 5.57331 5.59233 5.71349 5.77041 5.83119 5.96462 6.00132 6.18594 6.31833 6.40109 6.45792 6.55623 6.70014 6.89303 7.26717 7.42974 7.57270 7.60837 8.02649 8.36145 9.09291 9.75304 10.68910 11.45190 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002875 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.694294 B = 9737.827122 C =10408.510970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.116 3.884 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.169 4.169 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.081 0.919 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.512 3.488 18 O -0.523 6.523 19 C -0.106 4.106 20 C -0.063 4.063 21 C -0.065 4.065 22 C -0.146 4.146 23 C 0.109 3.891 24 F -0.135 7.135 25 C -0.146 4.146 26 C 0.007 3.993 27 Cl -0.053 7.053 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.252 0.748 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 -21.463 5.480 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C -0.007 4.007 4 C 0.026 3.974 5 H 0.060 0.940 6 C -0.207 4.207 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.099 0.901 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.298 3.702 18 O -0.398 6.398 19 C -0.146 4.146 20 C -0.064 4.064 21 C -0.084 4.084 22 C -0.165 4.165 23 C 0.090 3.910 24 F -0.113 7.113 25 C -0.166 4.166 26 C -0.020 4.020 27 Cl -0.023 7.023 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.106 -21.166 5.636 24.558 hybrid contribution 1.068 0.287 0.365 1.165 sum -10.038 -20.879 6.001 23.931 Atomic orbital electron populations 1.21827 0.79948 1.03380 1.01579 1.47852 1.06794 1.06385 1.73400 1.21870 0.97375 0.82378 0.99069 1.22403 0.90335 0.91087 0.93583 0.94030 1.23766 0.96300 1.00041 1.00641 1.21925 0.85175 0.98567 0.91114 1.45705 1.28309 1.16120 1.42485 1.18984 0.99823 1.04511 1.10779 0.90094 1.24795 0.99127 0.98287 0.98230 1.69857 1.40895 1.17781 1.28268 0.86076 0.82947 0.78530 0.78470 1.20366 1.21742 1.21742 1.20250 0.88049 0.84750 0.77125 1.90770 1.13899 1.86892 1.48249 1.20782 0.97493 0.90677 1.05664 1.19258 0.98471 0.96778 0.91932 1.20844 0.96445 0.93886 0.97190 1.21204 0.98411 0.99236 0.97681 1.17434 0.91624 0.87780 0.94194 1.91522 1.66479 1.56079 1.97229 1.20903 1.00163 0.97035 0.98479 1.20423 0.98465 0.95142 0.87949 1.98389 1.93637 1.78539 1.31770 0.92785 0.90302 0.91479 0.90574 0.89835 0.92822 0.90560 0.91625 0.95806 0.93792 0.87479 0.87442 0.83939 0.83968 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.23 59.85 0.61 1.30 16 2 N -0.61 -8.49 2.87 -181.57 -0.52 -9.01 16 3 C 0.12 2.09 5.37 -4.04 -0.02 2.07 16 4 C 0.13 2.76 4.31 -72.40 -0.31 2.45 16 5 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.17 -3.05 7.12 -26.22 -0.19 -3.24 16 7 C 0.16 3.74 7.28 -8.52 -0.06 3.68 16 8 N -0.60 -15.60 3.65 -177.03 -0.65 -16.24 16 9 C -0.21 -6.13 10.55 -15.06 -0.16 -6.29 16 10 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.86 11.64 55.49 0.65 -27.21 16 13 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C 0.51 7.47 7.65 -10.98 -0.08 7.39 16 18 O -0.52 -10.19 15.59 5.56 0.09 -10.10 16 19 C -0.11 -1.05 4.01 -29.03 -0.12 -1.16 16 20 C -0.06 -0.69 4.38 -104.58 -0.46 -1.14 16 21 C -0.07 -0.63 9.68 -39.60 -0.38 -1.01 16 22 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 23 C 0.11 1.16 7.30 -39.42 -0.29 0.87 16 24 F -0.13 -1.47 17.27 2.25 0.04 -1.43 16 25 C -0.15 -1.57 9.81 -39.48 -0.39 -1.96 16 26 C 0.01 0.08 6.31 -39.51 -0.25 -0.17 16 27 Cl -0.05 -0.59 27.40 -51.86 -1.42 -2.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.72 7.16 -51.93 -0.37 0.35 16 30 H 0.07 0.43 6.47 -51.93 -0.34 0.09 16 31 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 32 H 0.08 1.78 7.36 -51.93 -0.38 1.40 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 35 H 0.07 1.70 7.37 -51.93 -0.38 1.32 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.11 0.89 7.12 -51.93 -0.37 0.52 16 39 H 0.11 0.73 7.16 -51.93 -0.37 0.36 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -34.88 370.11 -9.39 -44.27 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.54 Total: -2.31 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.59 Total: 0.69 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.52 Total: -52.46 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.88 -9.39 -44.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264370343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.806 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds