Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99795 * 2 1 4 4 C 1.53001 * 109.47052 * 269.99638 * 3 2 1 5 5 N 1.46903 * 109.46936 * 180.02562 * 4 3 2 6 6 C 1.46906 * 110.99741 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.46950 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00118 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00056 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00134 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00002 * 359.97438 * 10 9 7 12 12 C 1.38945 * 119.99731 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00454 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99848 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46915 * 59.99622 * 14 12 10 16 16 H 1.48503 * 109.47061 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47069 * 299.99696 * 14 12 10 18 18 C 1.34781 * 120.00022 * 179.97438 * 2 1 3 19 19 O 1.21521 * 119.99647 * 184.48306 * 18 2 1 20 20 C 1.48070 * 120.00063 * 4.48480 * 18 2 1 21 21 C 1.39873 * 120.93289 * 311.08276 * 20 18 2 22 22 C 1.38083 * 119.01683 * 180.34431 * 21 20 18 23 23 N 1.31844 * 120.94155 * 359.65046 * 22 21 20 24 24 C 1.31755 * 122.07332 * 0.02957 * 23 22 21 25 25 C 1.38357 * 120.87190 * 0.02562 * 24 23 22 26 26 Cl 1.73601 * 120.52110 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.47236 * 273.01995 * 1 2 3 28 28 H 1.08992 * 109.47224 * 33.01728 * 1 2 3 29 29 H 1.09003 * 109.47256 * 153.02373 * 1 2 3 30 30 H 1.09001 * 109.47533 * 30.00164 * 3 2 1 31 31 H 1.09001 * 109.47261 * 149.99951 * 3 2 1 32 32 H 1.08994 * 109.47614 * 300.00342 * 4 3 2 33 33 H 1.09002 * 109.46917 * 60.00600 * 4 3 2 34 34 H 1.00890 * 111.00168 * 56.05153 * 5 4 3 35 35 H 1.08998 * 109.47074 * 300.00136 * 6 5 4 36 36 H 1.09001 * 109.47363 * 60.00062 * 6 5 4 37 37 H 0.96995 * 119.99974 * 0.02562 * 9 7 6 38 38 H 0.97006 * 120.00614 * 180.02562 * 13 12 10 39 39 H 1.08000 * 120.48797 * 0.02562 * 21 20 18 40 40 H 1.08002 * 119.52855 * 179.67739 * 22 21 20 41 41 H 1.08003 * 119.56573 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4425 6 6 3.4502 3.4385 -2.8140 7 6 4.2045 4.7424 -2.7738 8 8 4.4951 5.2424 -1.7075 9 7 4.5572 5.3527 -3.9226 10 6 5.2439 6.5387 -3.8860 11 1 5.5019 6.9843 -2.9366 12 6 5.6069 7.1680 -5.0704 13 7 5.2926 6.6262 -6.2255 14 14 6.5419 8.7845 -5.0206 15 1 7.8303 8.5893 -4.3084 16 1 6.8081 9.2453 -6.4070 17 1 5.7312 9.8035 -4.3069 18 6 2.1389 -1.1672 0.0005 19 8 3.3513 -1.1687 0.0828 20 6 1.4020 -2.4476 -0.0992 21 6 0.3011 -2.7095 0.7230 22 6 -0.3527 -3.9197 0.6016 23 7 0.0428 -4.8186 -0.2781 24 6 1.0702 -4.6114 -1.0765 25 6 1.7840 -3.4274 -1.0223 26 17 3.1366 -3.1643 -2.0782 27 1 -0.3634 0.0541 1.0263 28 1 -0.3633 0.8616 -0.5599 29 1 -0.3634 -0.9159 -0.4662 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 3.0415 0.9508 -1.9564 33 1 1.5000 1.8407 -1.9563 34 1 4.0449 2.9044 -0.9166 35 1 4.0457 2.6907 -3.3378 36 1 2.5046 3.5813 -3.3369 37 1 4.3251 4.9527 -4.7752 38 1 5.5464 7.0653 -7.0524 39 1 -0.0294 -1.9782 1.4457 40 1 -1.2005 -4.1327 1.2359 41 1 1.3595 -5.3762 -1.7820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266845758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -51.301528 kcal Electronic energy + Delta-G solvation = -25877.719814 eV Core-core repulsion = 21818.035586 eV Total energy + Delta-G solvation = -4059.684228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92706 -40.42414 -40.13725 -37.82142 -37.53586 -36.35357 -35.78044 -33.93384 -33.28951 -32.22006 -30.93379 -28.17593 -27.70413 -26.23176 -25.06645 -24.61293 -23.25336 -21.30653 -20.88127 -19.93200 -18.85762 -18.15614 -17.94603 -17.61988 -17.29762 -17.01238 -16.58519 -16.47343 -16.15940 -15.87768 -15.43008 -15.25498 -15.12516 -15.01616 -14.81983 -14.23605 -14.13096 -13.86769 -13.55971 -13.43727 -13.29316 -13.15895 -13.02469 -12.94468 -12.78080 -12.44872 -12.33806 -12.14571 -12.13110 -11.56180 -11.52051 -10.94995 -10.61268 -10.42053 -10.11383 -10.04340 -9.85516 -9.47872 -8.48165 -5.97458 -0.48361 -0.20447 0.87384 1.36604 1.39100 1.41077 1.52299 1.74404 2.01623 2.28286 2.50662 2.88551 3.15140 3.18487 3.35017 3.50438 3.54949 3.66991 3.93337 4.02412 4.08790 4.19782 4.26754 4.41782 4.44186 4.45360 4.51433 4.53979 4.63837 4.73118 4.77824 4.88227 4.90966 5.29103 5.34821 5.39121 5.79166 6.02719 6.12745 6.24804 6.57174 6.66668 6.85836 7.09898 7.52774 8.07682 8.68949 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.001906 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.995178 B =14683.307512 C =15328.260276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.598 5.598 3 C 0.123 3.877 4 C 0.054 3.946 5 N -0.673 5.673 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.270 1.270 18 C 0.551 3.449 19 O -0.554 6.554 20 C -0.088 4.088 21 C -0.119 4.119 22 C 0.110 3.890 23 N -0.473 5.473 24 C 0.114 3.886 25 C -0.070 4.070 26 Cl -0.051 7.051 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.017 0.983 33 H 0.089 0.911 34 H 0.344 0.656 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.182 0.818 40 H 0.209 0.791 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 -23.819 11.151 31.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.330 5.330 3 C 0.000 4.000 4 C -0.076 4.076 5 N -0.305 5.305 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.195 1.195 18 C 0.338 3.662 19 O -0.432 6.432 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.047 4.047 23 N -0.182 5.182 24 C -0.043 4.043 25 C -0.100 4.100 26 Cl -0.022 7.022 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.107 0.893 34 H 0.162 0.838 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.230 0.770 38 H 0.088 0.912 39 H 0.200 0.800 40 H 0.226 0.774 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -17.448 -23.779 11.613 31.697 hybrid contribution 2.055 0.866 -1.131 2.501 sum -15.393 -22.913 10.482 29.526 Atomic orbital electron populations 1.22405 0.76326 1.04828 1.04483 1.47761 1.08904 1.04564 1.71787 1.21333 0.98306 0.84319 0.95994 1.22267 0.98965 0.88598 0.97819 1.60040 1.28187 1.29719 1.12592 1.21522 1.00546 0.93061 0.91507 1.20783 0.84253 0.88578 0.83896 1.90489 1.60640 1.68777 1.30902 1.41925 1.50243 1.21247 1.07503 1.19651 1.33141 0.99474 0.94233 0.90188 1.26083 0.98435 1.02909 0.93959 1.69667 1.47171 1.41320 0.97933 0.84961 0.78350 0.77192 0.77663 1.19752 1.19450 1.19527 1.18490 0.86760 0.84258 0.76701 1.90841 1.14985 1.87379 1.49959 1.20294 0.97516 0.94266 0.97930 1.22815 0.92297 1.00219 0.98553 1.23570 0.99103 0.87840 0.94166 1.67805 1.12550 1.33092 1.04728 1.23064 0.90199 0.93805 0.97257 1.22366 0.93811 0.97325 0.96473 1.98435 1.43406 1.96485 1.63902 0.88938 0.89338 0.89870 0.87031 0.91349 0.96510 0.89308 0.83798 0.92356 0.87295 0.76981 0.91243 0.80029 0.77410 0.79768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 9.12 127.77 1.17 1.61 16 2 N -0.60 -10.06 2.87 -849.95 -2.44 -12.50 16 3 C 0.12 2.56 5.72 86.38 0.49 3.05 16 4 C 0.05 1.32 6.01 86.30 0.52 1.84 16 5 N -0.67 -21.77 6.13 -517.93 -3.17 -24.94 16 6 C 0.07 2.36 6.17 85.55 0.53 2.88 16 7 C 0.44 21.31 7.82 87.66 0.69 21.99 16 8 O -0.62 -35.01 15.78 -3.07 -0.05 -35.05 16 9 N -0.57 -29.95 5.29 -306.99 -1.62 -31.58 16 10 C -0.34 -19.33 9.68 84.04 0.81 -18.51 16 11 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 12 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 13 N -0.92 -50.21 13.05 21.66 0.28 -49.92 16 14 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.55 12.07 6.83 86.85 0.59 12.66 16 19 O -0.55 -17.18 15.55 -3.78 -0.06 -17.24 16 20 C -0.09 -1.46 4.92 -19.86 -0.10 -1.56 16 21 C -0.12 -0.96 7.73 22.63 0.17 -0.79 16 22 C 0.11 0.77 11.17 84.65 0.95 1.72 16 23 N -0.47 -5.99 10.33 -195.91 -2.02 -8.01 16 24 C 0.11 1.60 10.99 84.73 0.93 2.53 16 25 C -0.07 -1.25 6.37 22.71 0.14 -1.11 16 26 Cl -0.05 -1.14 27.39 -2.72 -0.07 -1.21 16 27 H 0.09 0.21 7.60 -2.39 -0.02 0.19 16 28 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 29 H 0.08 0.49 5.67 -2.39 -0.01 0.48 16 30 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 31 H 0.07 1.73 7.36 -2.39 -0.02 1.71 16 32 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.34 12.07 8.43 -89.70 -0.76 11.31 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.11 3.40 8.14 -2.39 -0.02 3.39 16 37 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 38 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 39 H 0.18 0.31 6.65 -2.91 -0.02 0.29 16 40 H 0.21 -0.21 8.06 -2.91 -0.02 -0.23 16 41 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -78.22 369.22 -0.16 -78.39 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.39 Total: 30.71 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 7.36 Total: 26.02 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -8.98 Total: -126.96 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.11 Total: -52.30 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -78.22 -0.16 -78.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266845758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.084 kcal (2) G-P(sol) polarization free energy of solvation -78.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds