Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.53003 * 109.46845 * 240.00428 * 2 1 3 5 5 N 1.46508 * 109.46623 * 184.99684 * 4 2 1 6 6 C 1.34777 * 119.99489 * 179.97438 * 5 4 2 7 7 O 1.21523 * 120.00326 * 0.02562 * 6 5 4 8 8 C 1.48110 * 119.99640 * 180.02562 * 6 5 4 9 9 C 1.39346 * 119.70847 * 179.97438 * 8 6 5 10 10 C 1.38525 * 119.08168 * 180.02562 * 9 8 6 11 11 C 1.38777 * 118.47450 * 0.02562 * 10 9 8 12 12 Cl 1.73594 * 120.33460 * 180.02562 * 11 10 9 13 13 C 1.38717 * 119.32349 * 359.97438 * 11 10 9 14 14 N 1.31494 * 120.88444 * 0.02562 * 13 11 10 15 15 N 1.46892 * 109.47318 * 120.00349 * 2 1 3 16 16 C 1.46899 * 111.00050 * 275.00080 * 15 2 1 17 17 C 1.50696 * 109.47299 * 179.97438 * 16 15 2 18 18 O 1.21294 * 119.99998 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00432 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99557 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00242 * 179.97438 * 20 19 17 23 23 N 1.31420 * 119.99904 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46800 * 90.00390 * 24 22 20 26 26 H 1.48503 * 109.47345 * 210.00084 * 24 22 20 27 27 H 1.48498 * 109.47477 * 330.00444 * 24 22 20 28 28 H 1.09004 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47140 * 299.99448 * 1 2 3 30 30 H 1.09003 * 109.47021 * 59.99556 * 1 2 3 31 31 H 1.08998 * 109.47106 * 65.00490 * 4 2 1 32 32 H 1.08995 * 109.47205 * 304.99405 * 4 2 1 33 33 H 0.96999 * 120.00095 * 359.97438 * 5 4 2 34 34 H 1.08003 * 120.46171 * 0.02969 * 9 8 6 35 35 H 1.07992 * 120.76459 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.56056 * 179.97438 * 13 11 10 37 37 H 1.00894 * 111.00189 * 151.04903 * 15 2 1 38 38 H 1.09002 * 109.46983 * 300.00075 * 16 15 2 39 39 H 1.09004 * 109.47141 * 59.99596 * 16 15 2 40 40 H 0.97004 * 119.99767 * 0.02562 * 19 17 16 41 41 H 0.96991 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1730 -1.4290 -2.1909 7 8 3.5687 -1.8848 -3.1415 8 6 5.6491 -1.5357 -2.1313 9 6 6.3387 -2.1605 -3.1685 10 6 7.7191 -2.2536 -3.0992 11 6 8.3636 -1.7182 -1.9929 12 17 10.0919 -1.8074 -1.8569 13 6 7.6128 -1.1101 -0.9975 14 7 6.3032 -1.0361 -1.0899 15 7 2.0198 -0.6925 1.1993 16 6 2.0826 0.2225 2.3468 17 6 2.5874 -0.5220 3.5559 18 8 2.8670 -1.6991 3.4702 19 7 2.7274 0.1200 4.7327 20 6 3.1872 -0.5571 5.8325 21 1 3.4369 -1.6050 5.7560 22 6 3.3320 0.1049 7.0456 23 7 3.0277 1.3799 7.1387 24 14 3.9579 -0.8179 8.5443 25 1 5.4389 -0.7246 8.6001 26 1 3.3775 -0.2185 9.7728 27 1 3.5549 -2.2442 8.4514 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1581 -2.1370 32 1 1.6055 -1.7197 -1.2953 33 1 3.9825 -0.4620 -0.4320 34 1 5.8044 -2.5666 -4.0147 35 1 8.2807 -2.7326 -3.8875 36 1 8.1105 -0.6925 -0.1348 37 1 2.9174 -1.1204 1.0286 38 1 2.7589 1.0461 2.1182 39 1 1.0871 0.6162 2.5525 40 1 2.5028 1.0611 4.8015 41 1 3.1284 1.8419 7.9856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266986822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -39.321604 kcal Electronic energy + Delta-G solvation = -26013.626057 eV Core-core repulsion = 21954.461318 eV Total energy + Delta-G solvation = -4059.164739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05297 -39.45894 -38.39087 -37.16156 -36.96271 -34.26234 -33.81587 -32.94920 -31.82039 -31.26729 -30.73548 -27.03304 -26.30273 -24.63595 -24.12285 -23.79087 -21.08590 -20.66594 -19.35958 -18.60730 -17.88163 -17.44292 -17.03375 -16.29271 -16.00880 -15.78453 -15.40534 -15.29566 -14.98282 -14.50436 -14.31188 -14.25323 -13.86181 -13.77339 -13.42874 -12.99892 -12.80647 -12.73508 -12.53809 -12.33612 -11.89980 -11.79596 -11.74596 -11.66712 -11.42153 -11.08389 -10.87774 -10.63517 -10.41951 -10.39468 -10.21887 -10.01721 -9.52898 -9.51095 -9.24414 -8.47454 -8.12937 -7.96352 -6.41984 -3.82669 0.02154 0.62851 1.46626 2.32915 2.78525 3.17654 3.26461 3.32584 3.37032 3.70767 3.90111 4.04270 4.15897 4.24424 4.29494 4.39607 4.60416 4.64140 4.97824 5.16617 5.18245 5.24570 5.27970 5.30707 5.35721 5.49359 5.67963 5.70651 5.77961 5.87774 5.95688 5.97399 6.11174 6.24110 6.34128 7.02552 7.15159 7.31719 7.55172 7.57159 7.87829 8.06024 8.60998 9.17805 9.53965 10.05449 10.75783 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008460 B = 0.002741 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.070367 B =10212.034649 C =13097.685880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.050 0.950 4 C 0.116 3.884 5 N -0.708 5.708 6 C 0.574 3.426 7 O -0.531 6.531 8 C 0.083 3.917 9 C -0.099 4.099 10 C -0.072 4.072 11 C -0.071 4.071 12 Cl -0.045 7.045 13 C 0.119 3.881 14 N -0.440 5.440 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.411 0.589 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.349 0.651 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -0.187 -21.261 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.068 0.932 4 C -0.008 4.008 5 N -0.360 5.360 6 C 0.358 3.642 7 O -0.407 6.407 8 C -0.056 4.056 9 C -0.120 4.120 10 C -0.099 4.099 11 C -0.100 4.100 12 Cl -0.016 7.016 13 C -0.042 4.042 14 N -0.151 5.151 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.248 0.752 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.192 0.808 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.111 -1.032 -20.981 21.877 hybrid contribution 1.905 0.561 0.480 2.044 sum 8.016 -0.471 -20.501 22.017 Atomic orbital electron populations 1.21738 0.93248 1.03008 1.01609 1.21817 0.97191 0.96003 0.88942 0.93207 1.21723 0.78601 1.02394 0.98035 1.45902 1.08276 1.58262 1.23595 1.17700 0.85306 0.78414 0.82740 1.90800 1.68589 1.48013 1.33310 1.21318 0.94773 0.97698 0.91785 1.22139 0.93506 0.96823 0.99541 1.21587 0.94214 0.97109 0.96951 1.22394 0.86988 1.02542 0.98102 1.98411 1.08555 1.96825 1.97801 1.22903 0.88597 0.95142 0.97559 1.67739 1.09297 1.15536 1.22506 1.60141 1.34936 1.32219 1.02679 1.21755 1.01485 0.93828 0.91270 1.19784 0.84995 0.88210 0.84432 1.90534 1.55246 1.16081 1.84729 1.41856 1.57757 1.12436 1.07943 1.19699 1.39875 0.96439 0.86800 0.87937 1.25256 0.97665 0.95780 0.99220 1.69612 1.48659 1.08882 1.27195 0.85865 0.78767 0.79544 0.80168 1.20420 1.20932 1.19395 0.91469 0.91896 0.92460 0.90421 0.89900 0.75173 0.82353 0.82861 0.80759 0.83005 0.93760 0.89393 0.77475 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.42 37.16 0.35 -1.11 16 2 C 0.07 0.83 2.81 -67.71 -0.19 0.64 16 3 H 0.05 0.54 7.80 -51.93 -0.40 0.14 16 4 C 0.12 1.31 5.31 -4.04 -0.02 1.29 16 5 N -0.71 -8.50 4.98 -61.16 -0.30 -8.80 16 6 C 0.57 7.36 7.81 -12.21 -0.10 7.27 16 7 O -0.53 -7.84 16.32 5.35 0.09 -7.75 16 8 C 0.08 0.94 6.75 -83.01 -0.56 0.38 16 9 C -0.10 -0.89 9.63 -39.06 -0.38 -1.27 16 10 C -0.07 -0.53 9.97 -39.28 -0.39 -0.92 16 11 C -0.07 -0.58 6.35 -39.21 -0.25 -0.83 16 12 Cl -0.04 -0.33 28.99 -51.86 -1.50 -1.84 16 13 C 0.12 1.12 10.98 -17.52 -0.19 0.93 16 14 N -0.44 -5.00 9.54 -9.77 -0.09 -5.09 16 15 N -0.66 -10.41 5.92 -107.99 -0.64 -11.05 16 16 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 17 C 0.44 10.27 7.82 -10.99 -0.09 10.19 16 18 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 19 N -0.56 -14.12 5.29 -10.97 -0.06 -14.18 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 24 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 4.94 6.70 -40.82 -0.27 4.67 16 34 H 0.16 1.24 7.64 -52.48 -0.40 0.84 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.35 5.77 6.41 -39.30 -0.25 5.51 16 38 H 0.04 0.67 8.06 -51.93 -0.42 0.26 16 39 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 40 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -32.72 372.28 -8.09 -40.81 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -4.89 Total: 16.22 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -2.08 Total: 9.42 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.37 Total: -62.79 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.72 -8.09 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266986822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.486 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds