Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.53003 * 109.46845 * 240.00428 * 2 1 3 5 5 N 1.46508 * 109.46623 * 184.99684 * 4 2 1 6 6 C 1.34777 * 119.99489 * 179.97438 * 5 4 2 7 7 O 1.21523 * 120.00326 * 0.02562 * 6 5 4 8 8 C 1.48110 * 119.99640 * 180.02562 * 6 5 4 9 9 C 1.39346 * 119.70847 * 179.97438 * 8 6 5 10 10 C 1.38525 * 119.08168 * 180.02562 * 9 8 6 11 11 C 1.38777 * 118.47450 * 0.02562 * 10 9 8 12 12 Cl 1.73594 * 120.33460 * 180.02562 * 11 10 9 13 13 C 1.38717 * 119.32349 * 359.97438 * 11 10 9 14 14 N 1.31494 * 120.88444 * 0.02562 * 13 11 10 15 15 N 1.46892 * 109.47318 * 120.00349 * 2 1 3 16 16 C 1.46899 * 111.00050 * 275.00080 * 15 2 1 17 17 C 1.50696 * 109.47299 * 179.97438 * 16 15 2 18 18 O 1.21294 * 119.99998 * 359.97438 * 17 16 15 19 19 N 1.34778 * 120.00309 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00432 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99557 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00242 * 179.97438 * 20 19 17 23 23 N 1.31420 * 119.99904 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46800 * 90.00390 * 24 22 20 26 26 H 1.48503 * 109.47345 * 210.00084 * 24 22 20 27 27 H 1.48498 * 109.47477 * 330.00444 * 24 22 20 28 28 H 1.09004 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47140 * 299.99448 * 1 2 3 30 30 H 1.09003 * 109.47021 * 59.99556 * 1 2 3 31 31 H 1.08998 * 109.47106 * 65.00490 * 4 2 1 32 32 H 1.08995 * 109.47205 * 304.99405 * 4 2 1 33 33 H 0.96999 * 120.00095 * 359.97438 * 5 4 2 34 34 H 1.08003 * 120.46171 * 0.02969 * 9 8 6 35 35 H 1.07992 * 120.76459 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.56056 * 179.97438 * 13 11 10 37 37 H 1.00894 * 111.00189 * 151.04903 * 15 2 1 38 38 H 1.09002 * 109.46983 * 300.00075 * 16 15 2 39 39 H 1.09004 * 109.47141 * 59.99596 * 16 15 2 40 40 H 0.97004 * 119.99767 * 0.02562 * 19 17 16 41 41 H 0.96991 * 119.99965 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1730 -1.4290 -2.1909 7 8 3.5687 -1.8848 -3.1415 8 6 5.6491 -1.5357 -2.1313 9 6 6.3387 -2.1605 -3.1685 10 6 7.7191 -2.2536 -3.0992 11 6 8.3636 -1.7182 -1.9929 12 17 10.0919 -1.8074 -1.8569 13 6 7.6128 -1.1101 -0.9975 14 7 6.3032 -1.0361 -1.0899 15 7 2.0198 -0.6925 1.1993 16 6 2.0826 0.2225 2.3468 17 6 2.5874 -0.5220 3.5559 18 8 2.8670 -1.6991 3.4702 19 7 2.7274 0.1200 4.7327 20 6 3.1872 -0.5571 5.8325 21 1 3.4369 -1.6050 5.7560 22 6 3.3320 0.1049 7.0456 23 7 3.0277 1.3799 7.1387 24 14 3.9579 -0.8179 8.5443 25 1 5.4389 -0.7246 8.6001 26 1 3.3775 -0.2185 9.7728 27 1 3.5549 -2.2442 8.4514 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1581 -2.1370 32 1 1.6055 -1.7197 -1.2953 33 1 3.9825 -0.4620 -0.4320 34 1 5.8044 -2.5666 -4.0147 35 1 8.2807 -2.7326 -3.8875 36 1 8.1105 -0.6925 -0.1348 37 1 2.9174 -1.1204 1.0286 38 1 2.7589 1.0461 2.1182 39 1 1.0871 0.6162 2.5525 40 1 2.5028 1.0611 4.8015 41 1 3.1284 1.8419 7.9856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266986822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -64.285690 kcal Electronic energy + Delta-G solvation = -26014.708581 eV Core-core repulsion = 21954.461318 eV Total energy + Delta-G solvation = -4060.247263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85295 -40.45517 -40.04049 -38.23060 -37.76197 -35.98231 -35.14066 -33.70310 -33.26741 -32.62395 -31.84178 -28.18146 -27.67716 -25.85000 -25.24902 -24.70263 -21.97331 -21.65674 -21.12890 -19.94274 -19.48006 -18.21029 -17.96654 -17.54834 -17.03316 -16.88231 -16.76423 -16.40232 -16.18225 -16.02991 -15.63762 -15.33299 -15.08567 -14.92340 -14.43502 -14.27241 -13.75245 -13.66851 -13.64150 -13.48154 -13.28251 -13.08997 -12.93145 -12.80486 -12.57487 -12.42240 -12.40244 -12.11965 -11.89341 -11.55528 -11.49810 -11.08978 -10.80067 -10.37389 -10.33440 -10.08424 -10.00376 -9.38462 -8.45902 -5.94299 -0.72829 -0.03771 0.81397 1.38313 1.42343 1.45580 1.54894 1.90142 2.06312 2.29557 2.57621 2.84529 2.95427 3.21590 3.47890 3.52536 3.56524 3.68470 3.73239 3.88856 4.16908 4.25470 4.38515 4.46206 4.52919 4.58975 4.59553 4.63680 4.73859 4.81546 4.94772 5.05585 5.17545 5.21640 5.41866 5.45343 5.88084 6.09016 6.15245 6.31956 6.49142 6.61199 6.92844 7.13807 7.57348 8.12953 8.71490 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008460 B = 0.002741 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.070367 B =10212.034649 C =13097.685880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.076 3.924 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.707 5.707 6 C 0.571 3.429 7 O -0.557 6.557 8 C 0.059 3.941 9 C -0.096 4.096 10 C -0.062 4.062 11 C -0.068 4.068 12 Cl -0.034 7.034 13 C 0.107 3.893 14 N -0.461 5.461 15 N -0.680 5.680 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.411 0.589 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.341 0.659 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.397 0.603 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 0.497 -22.013 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.086 0.914 4 C -0.004 4.004 5 N -0.358 5.358 6 C 0.357 3.643 7 O -0.435 6.435 8 C -0.079 4.079 9 C -0.117 4.117 10 C -0.088 4.088 11 C -0.097 4.097 12 Cl -0.005 7.005 13 C -0.054 4.054 14 N -0.173 5.173 15 N -0.315 5.315 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.248 0.752 34 H 0.186 0.814 35 H 0.203 0.797 36 H 0.203 0.797 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.231 0.769 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.753 -0.309 -21.737 22.764 hybrid contribution 1.752 0.336 0.662 1.903 sum 8.505 0.027 -21.076 22.727 Atomic orbital electron populations 1.21747 0.92200 1.02672 1.02783 1.21897 0.97824 0.96405 0.87210 0.91447 1.21724 0.78225 1.01916 0.98492 1.45935 1.08562 1.57928 1.23370 1.17977 0.86101 0.77875 0.82386 1.90770 1.69318 1.49241 1.34215 1.21245 0.94101 0.99541 0.92982 1.22295 0.94237 0.96115 0.99088 1.21914 0.93606 0.96034 0.97199 1.22450 0.87471 1.01836 0.97933 1.98419 1.07622 1.96710 1.97773 1.23153 0.88227 0.95536 0.98456 1.67660 1.10268 1.16382 1.22956 1.60158 1.34671 1.32863 1.03828 1.21619 1.02608 0.93645 0.88949 1.20874 0.83206 0.87972 0.85451 1.90502 1.56648 1.18256 1.85607 1.41913 1.58254 1.12588 1.08156 1.19643 1.42079 0.95905 0.88614 0.90464 1.26005 0.97245 0.96609 1.01280 1.69667 1.48581 1.09664 1.28152 0.84960 0.78549 0.78011 0.77028 1.19538 1.19560 1.19916 0.92596 0.92232 0.89754 0.88754 0.91221 0.75211 0.81387 0.79715 0.79676 0.83867 0.91181 0.87503 0.76933 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.42 71.98 0.68 -1.95 16 2 C 0.08 1.65 2.81 44.92 0.13 1.78 16 3 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 4 C 0.12 2.60 5.31 86.38 0.46 3.06 16 5 N -0.71 -16.87 4.98 -465.70 -2.32 -19.19 16 6 C 0.57 14.74 7.81 86.86 0.68 15.42 16 7 O -0.56 -16.52 16.32 -3.79 -0.06 -16.58 16 8 C 0.06 1.33 6.75 41.90 0.28 1.61 16 9 C -0.10 -1.64 9.63 22.61 0.22 -1.42 16 10 C -0.06 -0.79 9.97 22.47 0.22 -0.56 16 11 C -0.07 -1.02 6.35 22.51 0.14 -0.87 16 12 Cl -0.03 -0.45 28.99 -2.72 -0.08 -0.53 16 13 C 0.11 1.97 10.98 84.86 0.93 2.90 16 14 N -0.46 -10.50 9.54 -184.82 -1.76 -12.26 16 15 N -0.68 -20.87 5.92 -495.58 -2.94 -23.81 16 16 C 0.06 2.12 5.96 85.56 0.51 2.63 16 17 C 0.44 20.63 7.82 87.66 0.69 21.32 16 18 O -0.62 -34.67 15.78 -3.07 -0.05 -34.72 16 19 N -0.57 -29.08 5.29 -306.99 -1.62 -30.70 16 20 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 23 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 24 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 9.90 6.70 -92.71 -0.62 9.27 16 34 H 0.17 2.46 7.64 -2.91 -0.02 2.44 16 35 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.34 11.34 6.41 -89.70 -0.58 10.77 16 38 H 0.07 1.99 8.06 -2.39 -0.02 1.97 16 39 H 0.11 3.17 7.44 -2.39 -0.02 3.16 16 40 H 0.40 19.06 7.90 -92.70 -0.73 18.33 16 41 H 0.28 13.92 8.31 -92.72 -0.77 13.15 16 Total: -1.00 -71.49 372.28 -1.12 -72.61 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -0.82 Total: 43.61 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 6.22 Total: 25.71 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -8.36 Total: -134.97 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.11 Total: -51.30 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -71.49 -1.12 -72.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266986822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.328 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds