Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36941 * 119.99962 * 2 1 4 4 H 1.07998 * 119.99994 * 206.26405 * 3 2 1 5 5 C 1.38813 * 119.99806 * 26.27386 * 3 2 1 6 6 N 1.31621 * 119.99887 * 9.90264 * 5 3 2 7 7 Si 1.86798 * 119.99962 * 189.90640 * 5 3 2 8 8 H 1.48501 * 109.47234 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47201 * 119.99756 * 7 5 3 10 10 H 1.48502 * 109.47132 * 239.99875 * 7 5 3 11 11 C 1.46495 * 120.00229 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47345 * 89.99890 * 11 2 1 13 13 H 1.09003 * 110.88732 * 302.57278 * 12 11 2 14 14 C 1.55157 * 111.00696 * 178.65304 * 12 11 2 15 15 C 1.54325 * 102.94187 * 206.42320 * 14 12 11 16 16 N 1.47018 * 107.27122 * 22.19116 * 15 14 12 17 17 C 1.34776 * 125.64984 * 181.02551 * 16 15 14 18 18 O 1.21575 * 120.00339 * 185.38708 * 17 16 15 19 19 C 1.47700 * 120.00034 * 5.38210 * 17 16 15 20 20 C 1.39673 * 120.15949 * 313.54622 * 19 17 16 21 21 C 1.37855 * 119.90014 * 179.97438 * 20 19 17 22 22 C 1.38447 * 120.23252 * 0.02562 * 21 20 19 23 23 C 1.38302 * 120.32507 * 359.97438 * 22 21 20 24 24 Cl 1.73606 * 119.95162 * 179.97438 * 23 22 21 25 25 C 1.38439 * 120.09163 * 359.70149 * 23 22 21 26 26 F 1.35098 * 120.11263 * 180.29699 * 25 23 22 27 27 C 1.47421 * 108.70557 * 1.05950 * 16 15 14 28 28 H 1.08999 * 109.47450 * 266.56408 * 1 2 3 29 29 H 1.08999 * 109.47406 * 146.56756 * 1 2 3 30 30 H 1.08998 * 109.47343 * 26.56384 * 1 2 3 31 31 H 0.97001 * 119.99560 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.47445 * 209.99741 * 11 2 1 33 33 H 1.08994 * 109.47265 * 329.99903 * 11 2 1 34 34 H 1.08999 * 110.71705 * 324.78179 * 14 12 11 35 35 H 1.08997 * 110.72203 * 88.05758 * 14 12 11 36 36 H 1.09001 * 109.88302 * 262.77501 * 15 14 12 37 37 H 1.08996 * 109.88395 * 141.60875 * 15 14 12 38 38 H 1.07999 * 120.05061 * 359.95631 * 20 19 17 39 39 H 1.08000 * 119.88193 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.84166 * 179.97438 * 22 21 20 41 41 H 1.09004 * 110.37095 * 217.03286 * 27 16 15 42 42 H 1.09001 * 110.46215 * 94.75740 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1460 1.2342 -0.4139 5 6 1.5630 2.3260 0.5322 6 7 0.4379 2.2326 1.2087 7 14 2.3705 3.9926 0.2880 8 1 3.6173 3.8277 -0.5017 9 1 1.4390 4.8922 -0.4389 10 1 2.6974 4.5829 1.6108 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 1.5155 -1.8032 -1.9925 14 6 3.2573 -3.0356 -1.4855 15 6 3.9808 -2.9575 -2.8464 16 7 4.0444 -1.5386 -3.2262 17 6 4.5840 -1.0527 -4.3616 18 8 4.6697 0.1485 -4.5285 19 6 5.0714 -1.9796 -5.4032 20 6 5.8681 -3.0721 -5.0532 21 6 6.3197 -3.9341 -6.0297 22 6 5.9867 -3.7205 -7.3564 23 6 5.1984 -2.6417 -7.7135 24 17 4.7872 -2.3827 -9.3802 25 6 4.7320 -1.7714 -6.7432 26 9 3.9569 -0.7209 -7.0909 27 6 3.4208 -0.7351 -2.1590 28 1 -0.3634 -0.0616 1.0258 29 1 -0.3634 -0.8576 -0.5662 30 1 -0.3634 0.9191 -0.4595 31 1 0.0279 3.0293 1.5803 32 1 3.1499 -1.1386 0.5133 33 1 1.6084 -2.0285 0.5129 34 1 3.9770 -3.0759 -0.6679 35 1 2.5873 -3.8947 -1.4537 36 1 3.4217 -3.5172 -3.5962 37 1 4.9887 -3.3620 -2.7542 38 1 6.1303 -3.2412 -4.0193 39 1 6.9354 -4.7791 -5.7587 40 1 6.3442 -4.3996 -8.1163 41 1 2.8689 0.1016 -2.5873 42 1 4.1775 -0.3730 -1.4631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267589768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -47.383145 kcal Electronic energy + Delta-G solvation = -27256.464497 eV Core-core repulsion = 23177.030222 eV Total energy + Delta-G solvation = -4079.434275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.20772 -41.51259 -39.82881 -38.85511 -37.63529 -37.12530 -34.11292 -32.81745 -31.83904 -31.62667 -30.08892 -27.88292 -27.55568 -25.58073 -24.00526 -23.80373 -22.81257 -21.15692 -20.92063 -18.91993 -18.81964 -18.46846 -17.98218 -17.32116 -17.02971 -16.84100 -16.73100 -16.13126 -15.70849 -15.67568 -15.21730 -15.04825 -14.65787 -14.56115 -14.36054 -14.15686 -13.95757 -13.83120 -13.36154 -13.20028 -13.08050 -12.89865 -12.70117 -12.66466 -12.63610 -12.30768 -12.20063 -12.15686 -11.92967 -11.90325 -11.57048 -11.44494 -11.20040 -10.62083 -10.21500 -9.89178 -9.73518 -8.70275 -7.86357 -5.34025 -0.42982 -0.19029 0.80411 1.38392 1.42325 1.43369 1.51440 1.81882 2.33888 2.47176 2.85679 3.16332 3.29758 3.53257 3.70088 3.73358 3.77002 3.94997 4.01625 4.08459 4.31085 4.33367 4.48941 4.62160 4.68767 4.74729 4.76296 4.83380 4.89774 4.94200 4.97980 5.01259 5.07754 5.12421 5.22906 5.25686 5.40012 5.51953 5.53018 5.63384 5.70774 6.35300 6.38136 6.89100 7.16514 7.88823 8.31966 9.18312 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.002843 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.271862 B = 9846.117173 C =10719.129223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.619 5.619 3 C -0.249 4.249 4 H 0.065 0.935 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.953 3.047 8 H -0.277 1.277 9 H -0.294 1.294 10 H -0.285 1.285 11 C 0.160 3.840 12 C -0.108 4.108 13 H 0.066 0.934 14 C -0.113 4.113 15 C 0.091 3.909 16 N -0.608 5.608 17 C 0.560 3.440 18 O -0.585 6.585 19 C -0.162 4.162 20 C -0.051 4.051 21 C -0.095 4.095 22 C -0.051 4.051 23 C -0.088 4.088 24 Cl -0.050 7.050 25 C 0.117 3.883 26 F -0.141 7.141 27 C 0.129 3.871 28 H -0.001 1.001 29 H 0.027 0.973 30 H 0.019 0.981 31 H 0.247 0.753 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.183 0.817 41 H 0.032 0.968 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.511 -24.045 -15.422 31.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.342 5.342 3 C -0.379 4.379 4 H 0.083 0.917 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.782 3.218 8 H -0.202 1.202 9 H -0.221 1.221 10 H -0.212 1.212 11 C 0.034 3.966 12 C -0.130 4.130 13 H 0.084 0.916 14 C -0.151 4.151 15 C -0.030 4.030 16 N -0.340 5.340 17 C 0.349 3.651 18 O -0.466 6.466 19 C -0.167 4.167 20 C -0.069 4.069 21 C -0.112 4.112 22 C -0.069 4.069 23 C -0.116 4.116 24 Cl -0.021 7.021 25 C 0.097 3.903 26 F -0.120 7.120 27 C 0.006 3.994 28 H 0.018 0.982 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.189 0.811 39 H 0.215 0.785 40 H 0.201 0.799 41 H 0.051 0.949 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.410 -23.206 -15.638 31.031 hybrid contribution -0.557 2.525 -0.289 2.601 sum 12.853 -20.682 -15.927 29.097 Atomic orbital electron populations 1.20504 0.83174 0.96611 0.96644 1.44117 1.01974 1.01876 1.86234 1.19450 0.99919 0.87571 1.30987 0.91689 1.25697 0.98733 1.01515 0.98559 1.70179 1.20988 1.27907 1.39258 0.85416 0.77967 0.81284 0.77137 1.20151 1.22144 1.21158 1.20875 0.96059 0.86860 0.92844 1.22925 0.96945 0.94801 0.98324 0.91592 1.22717 0.99380 0.96799 0.96241 1.22619 1.03029 0.79515 0.97795 1.48651 1.56630 1.10621 1.18108 1.18246 0.77818 0.87356 0.81655 1.90827 1.58054 1.17989 1.79732 1.19841 1.06160 1.00174 0.90488 1.21816 0.92409 0.89566 1.03106 1.21698 0.99095 1.00298 0.90130 1.21690 0.92603 0.93489 0.99131 1.21098 1.05239 0.99735 0.85512 1.98399 1.92763 1.96518 1.14420 1.17795 0.94169 0.86143 0.92243 1.91532 1.72434 1.55412 1.92584 1.22087 0.95020 0.94326 0.87919 0.98220 0.95469 0.96207 0.94332 0.93154 0.91727 0.88796 0.87066 0.89693 0.87512 0.81075 0.78500 0.79941 0.94903 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 8.99 127.77 1.15 9.87 16 2 N -0.62 -30.58 2.86 -726.97 -2.08 -32.66 16 3 C -0.25 -13.85 9.00 84.03 0.76 -13.09 16 4 H 0.07 3.61 6.62 -2.91 -0.02 3.59 16 5 C -0.05 -2.90 5.10 84.86 0.43 -2.47 16 6 N -0.94 -56.69 10.80 21.65 0.23 -56.46 16 7 Si 0.95 47.92 29.56 68.60 2.03 49.94 16 8 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 9 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 10 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 11 C 0.16 5.85 5.22 86.38 0.45 6.31 16 12 C -0.11 -3.29 3.29 -9.40 -0.03 -3.32 16 13 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 14 C -0.11 -2.00 6.42 31.78 0.20 -1.80 16 15 C 0.09 1.54 5.60 86.73 0.49 2.03 16 16 N -0.61 -18.09 3.33 -815.36 -2.71 -20.81 16 17 C 0.56 19.21 7.20 86.74 0.62 19.84 16 18 O -0.59 -27.00 16.85 -3.95 -0.07 -27.07 16 19 C -0.16 -3.97 5.44 -20.06 -0.11 -4.08 16 20 C -0.05 -0.63 8.53 22.53 0.19 -0.43 16 21 C -0.09 -0.54 10.03 22.23 0.22 -0.31 16 22 C -0.05 -0.46 9.82 22.33 0.22 -0.24 16 23 C -0.09 -1.63 6.32 22.33 0.14 -1.49 16 24 Cl -0.05 -0.95 28.61 -2.72 -0.08 -1.02 16 25 C 0.12 3.11 7.23 22.69 0.16 3.28 16 26 F -0.14 -4.90 16.02 44.97 0.72 -4.18 16 27 C 0.13 4.75 5.00 86.86 0.43 5.19 16 28 H 0.00 -0.03 7.76 -2.39 -0.02 -0.05 16 29 H 0.03 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.02 1.08 6.90 -2.39 -0.02 1.06 16 31 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.05 1.84 8.00 -2.38 -0.02 1.83 16 33 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 34 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.01 5.95 -2.39 -0.01 1.00 16 38 H 0.17 1.23 5.81 -2.91 -0.02 1.21 16 39 H 0.20 -0.71 8.06 -2.91 -0.02 -0.74 16 40 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.03 1.53 8.09 -2.38 -0.02 1.51 16 42 H 0.06 2.23 7.44 -2.39 -0.02 2.21 16 Total: -1.00 -82.86 362.16 4.43 -78.43 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: 1.05 Total: -5.46 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.34 Total: 19.28 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.56 Total: -109.92 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.07 Total: -27.07 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.72 Total: -4.18 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -82.86 4.43 -78.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267589768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.048 kcal (2) G-P(sol) polarization free energy of solvation -82.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds