Wall clock time and date at job start Sat Apr 11 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99961 * 2 1 4 4 H 1.07997 * 119.99953 * 323.58827 * 3 2 1 5 5 C 1.38816 * 119.99612 * 143.58964 * 3 2 1 6 6 N 1.31613 * 119.99642 * 160.55046 * 5 3 2 7 7 Si 1.86798 * 119.99987 * 340.54391 * 5 3 2 8 8 H 1.48493 * 109.47033 * 95.28516 * 7 5 3 9 9 H 1.48500 * 109.46847 * 215.28492 * 7 5 3 10 10 H 1.48504 * 109.47457 * 335.28413 * 7 5 3 11 11 C 1.46504 * 119.99852 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47341 * 89.99624 * 11 2 1 13 13 H 1.08996 * 110.88692 * 302.57226 * 12 11 2 14 14 C 1.55148 * 111.00327 * 178.64953 * 12 11 2 15 15 C 1.54324 * 102.94262 * 206.42256 * 14 12 11 16 16 N 1.47023 * 107.27088 * 22.19720 * 15 14 12 17 17 C 1.34779 * 125.64882 * 181.02735 * 16 15 14 18 18 O 1.21561 * 119.99895 * 184.92962 * 17 16 15 19 19 C 1.47775 * 120.00074 * 4.92595 * 17 16 15 20 20 C 1.39600 * 120.14428 * 312.18947 * 19 17 16 21 21 C 1.38125 * 119.83836 * 179.76844 * 20 19 17 22 22 F 1.35102 * 119.93315 * 180.25083 * 21 20 19 23 23 C 1.38620 * 120.13078 * 0.50689 * 21 20 19 24 24 C 1.38246 * 120.28774 * 359.74620 * 23 21 20 25 25 C 1.38146 * 120.16129 * 0.02562 * 24 23 21 26 26 Cl 1.73601 * 120.06831 * 180.02562 * 25 24 23 27 27 C 1.47424 * 108.70290 * 1.05382 * 16 15 14 28 28 H 1.09009 * 109.46824 * 265.10608 * 1 2 3 29 29 H 1.09001 * 109.47554 * 145.11066 * 1 2 3 30 30 H 1.09001 * 109.47607 * 25.10715 * 1 2 3 31 31 H 0.97002 * 119.99479 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46924 * 210.00045 * 11 2 1 33 33 H 1.09000 * 109.46899 * 329.99106 * 11 2 1 34 34 H 1.09001 * 110.72378 * 324.78197 * 14 12 11 35 35 H 1.08998 * 110.72454 * 88.06470 * 14 12 11 36 36 H 1.08997 * 109.88543 * 262.77375 * 15 14 12 37 37 H 1.09007 * 109.88241 * 141.60927 * 15 14 12 38 38 H 1.08004 * 120.08473 * 0.02562 * 20 19 17 39 39 H 1.07998 * 119.86003 * 179.71942 * 23 21 20 40 40 H 1.08003 * 119.91815 * 179.97438 * 24 23 21 41 41 H 1.08995 * 110.36856 * 217.03757 * 27 16 15 42 42 H 1.09004 * 110.45891 * 94.76134 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7678 2.0299 -0.5552 5 6 3.3346 1.3032 0.7136 6 7 4.1822 2.2685 0.4275 7 14 3.7258 0.0911 2.0800 8 1 4.5774 -1.0010 1.5441 9 1 4.4485 0.7921 3.1716 10 1 2.4625 -0.4814 2.6107 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5155 -1.8033 -1.9923 14 6 3.2572 -3.0357 -1.4854 15 6 3.9807 -2.9577 -2.8463 16 7 4.0443 -1.5388 -3.2261 17 6 4.5840 -1.0531 -4.3616 18 8 4.6621 0.1480 -4.5321 19 6 5.0806 -1.9805 -5.3994 20 6 5.9063 -3.0496 -5.0470 21 6 6.3630 -3.9155 -6.0214 22 9 7.1580 -4.9537 -5.6819 23 6 6.0116 -3.7182 -7.3478 24 6 5.1986 -2.6581 -7.7034 25 6 4.7311 -1.7876 -6.7380 26 17 3.7097 -0.4576 -7.1871 27 6 3.4207 -0.7353 -2.1590 28 1 -0.3633 -0.0877 1.0240 29 1 -0.3634 -0.8429 -0.5878 30 1 -0.3634 0.9305 -0.4360 31 1 5.0100 2.3506 0.9264 32 1 3.1498 -1.1387 0.5133 33 1 1.6084 -2.0286 0.5131 34 1 3.9770 -3.0761 -0.6678 35 1 2.5872 -3.8948 -1.4536 36 1 3.4215 -3.5175 -3.5960 37 1 4.9887 -3.3623 -2.7540 38 1 6.1839 -3.2018 -4.0144 39 1 6.3749 -4.3952 -8.1067 40 1 4.9289 -2.5098 -8.7386 41 1 2.8689 0.1014 -2.5873 42 1 4.1775 -0.3732 -1.4630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267690284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:22 Heat of formation + Delta-G solvation = -19.079468 kcal Electronic energy + Delta-G solvation = -27699.859707 eV Core-core repulsion = 23621.652771 eV Total energy + Delta-G solvation = -4078.206936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.28938 -40.40159 -38.80080 -37.39407 -36.56388 -35.54596 -32.49609 -31.65400 -30.99240 -30.56886 -28.96347 -26.43920 -25.91926 -24.42459 -23.06995 -22.61320 -21.12482 -20.18673 -19.70233 -17.81520 -17.25907 -16.98328 -16.82601 -16.41810 -15.98771 -15.55523 -15.45177 -15.17766 -14.33751 -14.22607 -13.99970 -13.82582 -13.43735 -13.34441 -13.17294 -12.96834 -12.71500 -12.54987 -12.32801 -12.04473 -11.84883 -11.77168 -11.55663 -11.44054 -11.10735 -11.01298 -10.91249 -10.61406 -10.35724 -10.27147 -9.77459 -9.75752 -9.54266 -9.48893 -8.91831 -8.55308 -8.31409 -6.85835 -5.96620 -3.40130 0.38837 0.60260 1.88752 2.62394 3.01955 3.23425 3.24454 3.44111 3.47510 3.79048 4.15609 4.31216 4.48829 4.53226 4.72614 4.76294 4.83799 5.04214 5.11333 5.21394 5.33175 5.42661 5.45419 5.51176 5.56494 5.61439 5.72853 5.86760 5.93205 6.10751 6.16549 6.22595 6.26808 6.35283 6.44144 6.54949 6.67370 6.69900 6.81254 6.92596 7.72994 8.04305 8.29665 8.37893 8.97024 9.70435 10.09705 11.18337 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003540 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.336029 B = 7907.184948 C = 8541.001495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.081 0.919 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.148 3.852 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.132 4.132 15 C 0.098 3.902 16 N -0.611 5.611 17 C 0.564 3.436 18 O -0.504 6.504 19 C -0.078 4.078 20 C -0.118 4.118 21 C 0.100 3.900 22 F -0.132 7.132 23 C -0.128 4.128 24 C -0.086 4.086 25 C -0.008 4.008 26 Cl -0.033 7.033 27 C 0.132 3.868 28 H 0.006 0.994 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.087 0.913 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -16.838 -14.454 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.337 5.337 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.196 1.196 11 C 0.021 3.979 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.171 4.171 15 C -0.025 4.025 16 N -0.345 5.345 17 C 0.350 3.650 18 O -0.378 6.378 19 C -0.083 4.083 20 C -0.137 4.137 21 C 0.081 3.919 22 F -0.111 7.111 23 C -0.147 4.147 24 C -0.105 4.105 25 C -0.036 4.036 26 Cl -0.004 7.004 27 C 0.012 3.988 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.561 -15.922 -14.574 21.641 hybrid contribution 0.534 -0.853 0.836 1.308 sum 2.096 -16.774 -13.738 21.783 Atomic orbital electron populations 1.21063 0.84412 0.99116 0.97341 1.44069 1.00879 1.01916 1.86833 1.18806 1.04981 0.90261 1.25601 0.90169 1.25421 0.97139 0.96386 0.97536 1.69846 1.09466 1.33814 1.40609 0.86950 0.77886 0.80602 0.83649 1.21473 1.23094 1.19575 1.21129 0.96524 0.88106 0.92099 1.23048 0.97490 0.92754 1.00246 0.90510 1.22723 0.99481 0.99051 0.95796 1.22166 1.00221 0.82764 0.97395 1.48640 1.58064 1.08581 1.19210 1.17520 0.79081 0.87596 0.80820 1.90899 1.54672 1.14355 1.77906 1.19777 0.99323 0.96040 0.93115 1.21383 0.98237 0.93364 1.00715 1.17529 0.94031 0.87038 0.93336 1.91543 1.71162 1.55357 1.93000 1.21227 0.99366 0.99203 0.94884 1.20888 0.96821 0.93118 0.99685 1.20991 0.97313 0.92638 0.92695 1.98435 1.65210 1.44416 1.92335 1.22300 0.95535 0.93641 0.87322 0.97547 0.95566 0.93560 0.92703 0.92828 0.93596 0.90545 0.90224 0.91630 0.91782 0.83052 0.83405 0.83254 0.89414 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.43 10.70 59.85 0.64 3.07 16 2 N -0.61 -14.01 2.47 -181.12 -0.45 -14.46 16 3 C -0.27 -7.26 8.99 -15.06 -0.14 -7.40 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 5 C 0.04 1.01 5.24 -17.43 -0.09 0.91 16 6 N -0.90 -27.08 13.97 55.49 0.78 -26.30 16 7 Si 0.88 21.71 24.79 -169.99 -4.21 17.50 16 8 H -0.29 -6.74 6.71 56.52 0.38 -6.36 16 9 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 10 H -0.27 -6.56 7.10 56.52 0.40 -6.16 16 11 C 0.15 2.96 4.03 -4.04 -0.02 2.94 16 12 C -0.11 -1.95 3.29 -88.48 -0.29 -2.24 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 14 C -0.13 -1.75 6.42 -24.90 -0.16 -1.91 16 15 C 0.10 1.25 5.65 -3.06 -0.02 1.23 16 16 N -0.61 -10.41 3.33 -171.65 -0.57 -10.98 16 17 C 0.56 10.03 6.94 -12.36 -0.09 9.94 16 18 O -0.50 -11.04 16.05 5.31 0.09 -10.95 16 19 C -0.08 -1.08 5.41 -104.95 -0.57 -1.65 16 20 C -0.12 -1.33 8.50 -39.11 -0.33 -1.66 16 21 C 0.10 0.98 7.29 -39.48 -0.29 0.69 16 22 F -0.13 -1.31 17.26 2.25 0.04 -1.28 16 23 C -0.13 -1.02 10.02 -39.44 -0.40 -1.41 16 24 C -0.09 -0.76 9.81 -39.61 -0.39 -1.15 16 25 C -0.01 -0.10 6.34 -39.07 -0.25 -0.35 16 26 Cl -0.03 -0.46 27.11 -51.86 -1.41 -1.87 16 27 C 0.13 2.68 5.34 -2.53 -0.01 2.67 16 28 H 0.01 0.12 8.14 -51.92 -0.42 -0.30 16 29 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.05 1.19 2.84 -51.93 -0.15 1.05 16 33 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.08 1.03 8.04 -51.93 -0.42 0.62 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 38 H 0.15 1.58 5.97 -52.48 -0.31 1.27 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.09 2.05 8.08 -51.93 -0.42 1.63 16 42 H 0.08 1.89 7.89 -51.93 -0.41 1.48 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -32.31 357.92 -8.13 -40.43 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.39 Total: -1.19 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.39 Total: 3.69 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.24 Total: -51.74 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.21 Total: 17.50 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.41 Total: -1.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.31 -8.13 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267690284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.355 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds