Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99961 * 2 1 4 4 H 1.07997 * 119.99953 * 323.58827 * 3 2 1 5 5 C 1.38816 * 119.99612 * 143.58964 * 3 2 1 6 6 N 1.31613 * 119.99642 * 160.55046 * 5 3 2 7 7 Si 1.86798 * 119.99987 * 340.54391 * 5 3 2 8 8 H 1.48493 * 109.47033 * 95.28516 * 7 5 3 9 9 H 1.48500 * 109.46847 * 215.28492 * 7 5 3 10 10 H 1.48504 * 109.47457 * 335.28413 * 7 5 3 11 11 C 1.46504 * 119.99852 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47341 * 89.99624 * 11 2 1 13 13 H 1.08996 * 110.88692 * 302.57226 * 12 11 2 14 14 C 1.55148 * 111.00327 * 178.64953 * 12 11 2 15 15 C 1.54324 * 102.94262 * 206.42256 * 14 12 11 16 16 N 1.47023 * 107.27088 * 22.19720 * 15 14 12 17 17 C 1.34779 * 125.64882 * 181.02735 * 16 15 14 18 18 O 1.21561 * 119.99895 * 184.92962 * 17 16 15 19 19 C 1.47775 * 120.00074 * 4.92595 * 17 16 15 20 20 C 1.39600 * 120.14428 * 312.18947 * 19 17 16 21 21 C 1.38125 * 119.83836 * 179.76844 * 20 19 17 22 22 F 1.35102 * 119.93315 * 180.25083 * 21 20 19 23 23 C 1.38620 * 120.13078 * 0.50689 * 21 20 19 24 24 C 1.38246 * 120.28774 * 359.74620 * 23 21 20 25 25 C 1.38146 * 120.16129 * 0.02562 * 24 23 21 26 26 Cl 1.73601 * 120.06831 * 180.02562 * 25 24 23 27 27 C 1.47424 * 108.70290 * 1.05382 * 16 15 14 28 28 H 1.09009 * 109.46824 * 265.10608 * 1 2 3 29 29 H 1.09001 * 109.47554 * 145.11066 * 1 2 3 30 30 H 1.09001 * 109.47607 * 25.10715 * 1 2 3 31 31 H 0.97002 * 119.99479 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46924 * 210.00045 * 11 2 1 33 33 H 1.09000 * 109.46899 * 329.99106 * 11 2 1 34 34 H 1.09001 * 110.72378 * 324.78197 * 14 12 11 35 35 H 1.08998 * 110.72454 * 88.06470 * 14 12 11 36 36 H 1.08997 * 109.88543 * 262.77375 * 15 14 12 37 37 H 1.09007 * 109.88241 * 141.60927 * 15 14 12 38 38 H 1.08004 * 120.08473 * 0.02562 * 20 19 17 39 39 H 1.07998 * 119.86003 * 179.71942 * 23 21 20 40 40 H 1.08003 * 119.91815 * 179.97438 * 24 23 21 41 41 H 1.08995 * 110.36856 * 217.03757 * 27 16 15 42 42 H 1.09004 * 110.45891 * 94.76134 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7678 2.0299 -0.5552 5 6 3.3346 1.3032 0.7136 6 7 4.1822 2.2685 0.4275 7 14 3.7258 0.0911 2.0800 8 1 4.5774 -1.0010 1.5441 9 1 4.4485 0.7921 3.1716 10 1 2.4625 -0.4814 2.6107 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5155 -1.8033 -1.9923 14 6 3.2572 -3.0357 -1.4854 15 6 3.9807 -2.9577 -2.8463 16 7 4.0443 -1.5388 -3.2261 17 6 4.5840 -1.0531 -4.3616 18 8 4.6621 0.1480 -4.5321 19 6 5.0806 -1.9805 -5.3994 20 6 5.9063 -3.0496 -5.0470 21 6 6.3630 -3.9155 -6.0214 22 9 7.1580 -4.9537 -5.6819 23 6 6.0116 -3.7182 -7.3478 24 6 5.1986 -2.6581 -7.7034 25 6 4.7311 -1.7876 -6.7380 26 17 3.7097 -0.4576 -7.1871 27 6 3.4207 -0.7353 -2.1590 28 1 -0.3633 -0.0877 1.0240 29 1 -0.3634 -0.8429 -0.5878 30 1 -0.3634 0.9305 -0.4360 31 1 5.0100 2.3506 0.9264 32 1 3.1498 -1.1387 0.5133 33 1 1.6084 -2.0286 0.5131 34 1 3.9770 -3.0761 -0.6678 35 1 2.5872 -3.8948 -1.4536 36 1 3.4215 -3.5175 -3.5960 37 1 4.9887 -3.3623 -2.7540 38 1 6.1839 -3.2018 -4.0144 39 1 6.3749 -4.3952 -8.1067 40 1 4.9289 -2.5098 -8.7386 41 1 2.8689 0.1014 -2.5873 42 1 4.1775 -0.3732 -1.4630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267690284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -39.665135 kcal Electronic energy + Delta-G solvation = -27700.752369 eV Core-core repulsion = 23621.652771 eV Total energy + Delta-G solvation = -4079.099597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.04446 -41.59683 -39.88632 -38.81066 -37.55000 -37.20734 -33.99486 -33.37499 -32.19380 -31.41549 -30.26429 -28.09165 -27.64118 -25.58437 -24.01952 -23.71130 -22.85371 -21.53881 -20.95941 -18.93441 -18.84070 -18.11142 -17.81198 -17.53154 -17.26396 -16.85537 -16.72969 -16.47533 -15.75581 -15.52107 -15.18308 -15.02369 -14.81172 -14.61262 -14.34954 -14.32019 -14.20596 -13.86656 -13.70028 -13.52054 -13.30218 -13.11829 -12.75210 -12.65953 -12.56642 -12.39795 -12.15271 -12.11259 -11.96361 -11.77812 -11.61702 -11.27831 -11.10775 -10.63324 -10.40424 -9.80430 -9.70547 -8.77148 -8.15542 -5.55685 -0.48773 -0.18602 0.96052 1.26427 1.40551 1.45339 1.51291 1.81208 2.25322 2.41519 2.93309 3.06578 3.25599 3.36754 3.49609 3.65994 3.77226 3.83532 3.94158 3.98311 4.22126 4.28045 4.40899 4.52933 4.59119 4.62234 4.70618 4.74756 4.76010 4.78877 4.82812 4.90704 4.94182 5.03149 5.08898 5.14163 5.16680 5.26373 5.42467 5.49355 5.94524 6.17309 6.40792 6.94349 7.00134 7.65271 8.04263 9.04240 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.003540 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.336029 B = 7907.184948 C = 8541.001495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.628 5.628 3 C -0.252 4.252 4 H 0.031 0.969 5 C -0.021 4.021 6 N -0.953 5.953 7 Si 0.947 3.053 8 H -0.267 1.267 9 H -0.316 1.316 10 H -0.253 1.253 11 C 0.142 3.858 12 C -0.105 4.105 13 H 0.088 0.912 14 C -0.120 4.120 15 C 0.093 3.907 16 N -0.613 5.613 17 C 0.558 3.442 18 O -0.564 6.564 19 C -0.100 4.100 20 C -0.116 4.116 21 C 0.104 3.896 22 F -0.129 7.129 23 C -0.102 4.102 24 C -0.073 4.073 25 C -0.022 4.022 26 Cl -0.059 7.059 27 C 0.142 3.858 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.259 0.741 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.189 0.811 40 H 0.181 0.819 41 H 0.036 0.964 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -22.459 -15.407 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.353 5.353 3 C -0.382 4.382 4 H 0.049 0.951 5 C -0.217 4.217 6 N -0.598 5.598 7 Si 0.776 3.224 8 H -0.194 1.194 9 H -0.245 1.245 10 H -0.177 1.177 11 C 0.016 3.984 12 C -0.126 4.126 13 H 0.107 0.893 14 C -0.158 4.158 15 C -0.029 4.029 16 N -0.346 5.346 17 C 0.346 3.654 18 O -0.443 6.443 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.084 3.916 22 F -0.108 7.108 23 C -0.121 4.121 24 C -0.092 4.092 25 C -0.050 4.050 26 Cl -0.030 7.030 27 C 0.020 3.980 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.174 0.826 39 H 0.206 0.794 40 H 0.199 0.801 41 H 0.055 0.945 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.433 -21.637 -15.528 26.671 hybrid contribution 0.545 0.884 0.987 1.433 sum 1.978 -20.754 -14.541 25.418 Atomic orbital electron populations 1.21169 0.82173 1.00113 0.98552 1.44218 1.02417 1.01502 1.87128 1.18564 1.04878 0.90950 1.23783 0.95142 1.26033 0.97028 0.98696 0.99930 1.70020 1.10306 1.37136 1.42304 0.85832 0.78408 0.78596 0.79598 1.19409 1.24516 1.17681 1.21289 0.95757 0.87456 0.93852 1.22887 0.97650 0.94080 0.98020 0.89323 1.22771 0.99480 0.97757 0.95827 1.22510 1.02215 0.80116 0.98015 1.48720 1.57293 1.10208 1.18360 1.18263 0.78028 0.87622 0.81458 1.90854 1.57117 1.17199 1.79153 1.19397 1.01835 0.96833 0.92326 1.21339 0.97732 0.92857 1.01596 1.17552 0.93733 0.86602 0.93692 1.91561 1.71045 1.55104 1.93081 1.21658 0.97060 0.98496 0.94873 1.21230 0.95694 0.91956 1.00292 1.21240 0.97914 0.92845 0.93000 1.98426 1.66155 1.46071 1.92376 1.21842 0.94709 0.93943 0.87507 0.96333 0.91940 0.94849 0.93170 0.94983 0.89720 0.90541 0.85843 0.88867 0.89470 0.82623 0.79365 0.80140 0.94534 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.64 10.70 127.77 1.37 6.00 16 2 N -0.63 -28.71 2.47 -726.93 -1.79 -30.50 16 3 C -0.25 -14.42 8.99 84.03 0.76 -13.66 16 4 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 5 C -0.02 -1.24 5.24 84.86 0.44 -0.79 16 6 N -0.95 -61.66 13.97 21.65 0.30 -61.36 16 7 Si 0.95 45.85 24.79 68.60 1.70 47.55 16 8 H -0.27 -11.95 6.71 99.48 0.67 -11.28 16 9 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 10 H -0.25 -11.39 7.10 99.48 0.71 -10.69 16 11 C 0.14 5.39 4.03 86.38 0.35 5.73 16 12 C -0.10 -3.45 3.29 -9.40 -0.03 -3.48 16 13 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 14 C -0.12 -2.70 6.42 31.78 0.20 -2.50 16 15 C 0.09 2.10 5.65 86.73 0.49 2.59 16 16 N -0.61 -21.29 3.33 -815.26 -2.71 -24.00 16 17 C 0.56 20.74 6.94 86.77 0.60 21.34 16 18 O -0.56 -26.92 16.05 -3.91 -0.06 -26.99 16 19 C -0.10 -2.69 5.41 -20.08 -0.11 -2.79 16 20 C -0.12 -2.34 8.50 22.57 0.19 -2.15 16 21 C 0.10 1.61 7.29 22.33 0.16 1.77 16 22 F -0.13 -2.03 17.26 44.97 0.78 -1.25 16 23 C -0.10 -1.12 10.02 22.36 0.22 -0.89 16 24 C -0.07 -1.02 9.81 22.25 0.22 -0.81 16 25 C -0.02 -0.52 6.34 22.60 0.14 -0.38 16 26 Cl -0.06 -1.69 27.11 -2.72 -0.07 -1.76 16 27 C 0.14 6.09 5.34 86.86 0.46 6.56 16 28 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 1.88 8.11 -2.39 -0.02 1.86 16 30 H 0.03 1.30 8.00 -2.39 -0.02 1.28 16 31 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 32 H 0.03 1.38 2.84 -2.39 -0.01 1.37 16 33 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 34 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.61 6.01 -2.38 -0.01 1.60 16 38 H 0.16 2.90 5.97 -2.91 -0.02 2.88 16 39 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 40 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.04 1.88 8.08 -2.39 -0.02 1.86 16 42 H 0.03 1.79 7.89 -2.39 -0.02 1.77 16 Total: -1.00 -80.54 357.92 4.62 -75.92 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.01 Total: 5.85 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 5.48 Total: 16.55 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -4.20 Total: -115.86 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.06 Total: -26.99 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.70 Total: 47.55 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.07 Total: -1.76 kcal Total: -80.54 4.62 -75.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267690284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.252 kcal (2) G-P(sol) polarization free energy of solvation -80.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds