Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.30010 * 2 1 4 4 C 1.54388 * 110.34496 * 237.82487 * 2 1 3 5 5 N 1.48143 * 104.61652 * 217.15223 * 4 2 1 6 6 C 1.34775 * 127.84022 * 219.58350 * 5 4 2 7 7 O 1.21559 * 120.00247 * 174.70127 * 6 5 4 8 8 C 1.47777 * 119.99800 * 354.69742 * 6 5 4 9 9 C 1.39610 * 120.14679 * 323.44944 * 8 6 5 10 10 C 1.38123 * 119.84045 * 180.02562 * 9 8 6 11 11 F 1.35091 * 119.93535 * 179.97438 * 10 9 8 12 12 C 1.38625 * 120.12547 * 359.97438 * 10 9 8 13 13 C 1.38234 * 120.29854 * 0.02562 * 12 10 9 14 14 C 1.38156 * 120.15665 * 359.67605 * 13 12 10 15 15 Cl 1.73605 * 120.06986 * 180.30108 * 14 13 12 16 16 C 1.48147 * 104.32455 * 39.58999 * 5 4 2 17 17 C 1.54289 * 110.43104 * 122.23431 * 2 1 3 18 18 H 1.09003 * 110.34006 * 237.78978 * 17 2 1 19 19 C 1.52998 * 110.34263 * 359.94411 * 17 2 1 20 20 N 1.46504 * 109.46822 * 185.00076 * 19 17 2 21 21 C 1.36945 * 119.99870 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99384 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99682 * 179.97438 * 21 20 19 24 24 N 1.31608 * 120.00441 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99688 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46836 * 90.00003 * 25 23 21 27 27 H 1.48494 * 109.46939 * 210.00294 * 25 23 21 28 28 H 1.48499 * 109.47057 * 330.00219 * 25 23 21 29 29 H 1.09004 * 109.46426 * 180.72063 * 1 2 3 30 30 H 1.08999 * 109.47224 * 300.71819 * 1 2 3 31 31 H 1.08998 * 109.47337 * 60.72564 * 1 2 3 32 32 H 1.08999 * 110.40509 * 335.94200 * 4 2 1 33 33 H 1.09000 * 110.40561 * 98.37302 * 4 2 1 34 34 H 1.08000 * 120.08029 * 0.02562 * 9 8 6 35 35 H 1.08009 * 119.84731 * 180.02562 * 12 10 9 36 36 H 1.07997 * 119.92820 * 180.02562 * 13 12 10 37 37 H 1.08999 * 110.41169 * 201.62649 * 16 5 4 38 38 H 1.09002 * 110.51046 * 79.24182 * 16 5 4 39 39 H 1.08996 * 109.47279 * 304.99594 * 19 17 2 40 40 H 1.08998 * 109.47356 * 65.00104 * 19 17 2 41 41 H 0.97000 * 120.00191 * 359.97438 * 20 19 17 42 42 H 0.97002 * 120.00487 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7708 -1.2253 5 7 3.2680 -1.4787 -0.7247 6 6 4.4438 -1.6615 -1.3577 7 8 5.3732 -2.1846 -0.7745 8 6 4.6029 -1.2260 -2.7609 9 6 3.5401 -1.3482 -3.6578 10 6 3.6960 -0.9396 -4.9680 11 9 2.6690 -1.0575 -5.8376 12 6 4.9043 -0.4089 -5.3922 13 6 5.9603 -0.2855 -4.5087 14 6 5.8156 -0.6846 -3.1940 15 17 7.1408 -0.5213 -2.0845 16 6 2.8837 -1.9404 0.6295 17 6 2.0686 -0.7712 1.2230 18 1 2.7114 -0.1276 1.8237 19 6 0.9100 -1.3029 2.0689 20 7 1.4390 -1.9270 3.2843 21 6 0.5822 -2.4777 4.1997 22 1 -0.4833 -2.4523 4.0255 23 6 1.0835 -3.0695 5.3510 24 7 2.3820 -3.1008 5.5630 25 14 -0.0852 -3.8201 6.6001 26 1 -0.3169 -5.2482 6.2653 27 1 0.5096 -3.7199 7.9570 28 1 -1.3773 -3.0889 6.5708 29 1 -0.3632 -1.0277 0.0129 30 1 -0.3633 0.5249 0.8835 31 1 -0.3634 0.5025 -0.8964 32 1 1.3243 -1.4858 -1.5796 33 1 2.3384 -0.0776 -2.0213 34 1 2.5982 -1.7612 -3.3280 35 1 5.0212 -0.0905 -6.4176 36 1 6.8989 0.1292 -4.8455 37 1 3.7716 -2.1295 1.2329 38 1 2.2694 -2.8386 0.5668 39 1 0.2507 -0.4788 2.3412 40 1 0.3503 -2.0417 1.4952 41 1 2.3961 -1.9507 3.4402 42 1 2.7323 -3.5146 6.3673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271674017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -56.841544 kcal Electronic energy + Delta-G solvation = -27019.128738 eV Core-core repulsion = 22939.284316 eV Total energy + Delta-G solvation = -4079.844422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02658 -41.66293 -40.06212 -38.89520 -37.49685 -36.43001 -34.48668 -32.86392 -32.74792 -31.39807 -30.43892 -27.89649 -26.81269 -25.57867 -24.50496 -23.74652 -23.41237 -21.08853 -20.22019 -19.23833 -18.63485 -18.11746 -17.77429 -17.55540 -16.92187 -16.76079 -16.58959 -16.37037 -16.15748 -15.35668 -15.25956 -15.21533 -14.84560 -14.63683 -14.47849 -14.10043 -13.81027 -13.66318 -13.54898 -13.23982 -13.06005 -12.85255 -12.84166 -12.77491 -12.65824 -12.35369 -12.17450 -12.11323 -11.82565 -11.70632 -11.51706 -11.30831 -11.04476 -10.87737 -10.38460 -9.91339 -9.72681 -8.97382 -7.93559 -5.22620 -0.52614 -0.17541 0.99155 1.47283 1.48932 1.49387 1.57647 1.71817 2.29219 2.56745 2.93398 3.23523 3.40034 3.46317 3.52709 3.66110 3.82071 3.82753 3.95278 4.11771 4.20170 4.26302 4.39706 4.43917 4.52571 4.56690 4.61439 4.71809 4.80283 4.81250 4.83822 4.84541 4.93307 4.97730 5.16400 5.19710 5.25859 5.42250 5.49884 5.51941 5.56306 6.28220 6.39286 6.90901 7.34045 8.11267 8.32332 9.30238 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.002711 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.757016 B =10326.290263 C =11440.105401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.091 0.909 4 C 0.099 3.901 5 N -0.614 5.614 6 C 0.567 3.433 7 O -0.558 6.558 8 C -0.105 4.105 9 C -0.110 4.110 10 C 0.100 3.900 11 F -0.130 7.130 12 C -0.101 4.101 13 C -0.078 4.078 14 C -0.019 4.019 15 Cl -0.055 7.055 16 C 0.122 3.878 17 C -0.098 4.098 18 H 0.063 0.937 19 C 0.165 3.835 20 N -0.750 5.750 21 C -0.240 4.240 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.973 3.027 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.266 1.266 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.179 0.821 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.370 0.630 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 10.486 -29.046 30.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.022 4.022 5 N -0.347 5.347 6 C 0.356 3.644 7 O -0.437 6.437 8 C -0.109 4.109 9 C -0.130 4.130 10 C 0.080 3.920 11 F -0.108 7.108 12 C -0.120 4.120 13 C -0.096 4.096 14 C -0.047 4.047 15 Cl -0.026 7.026 16 C -0.001 4.001 17 C -0.117 4.117 18 H 0.082 0.918 19 C 0.039 3.961 20 N -0.393 5.393 21 C -0.372 4.372 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.225 1.225 28 H -0.190 1.190 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.178 0.822 35 H 0.204 0.796 36 H 0.196 0.804 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.201 0.799 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.200 10.167 -28.660 30.490 hybrid contribution 0.129 -0.831 1.579 1.789 sum 2.329 9.336 -27.081 28.740 Atomic orbital electron populations 1.21874 0.92356 1.02794 1.02998 1.22059 0.97640 0.99265 0.91816 0.89043 1.22973 0.85658 0.96219 0.97367 1.48956 1.13211 1.55045 1.17449 1.18100 0.81005 0.79066 0.86230 1.90849 1.39753 1.45228 1.67902 1.19383 0.94371 1.03886 0.93304 1.21414 0.99338 1.00333 0.91894 1.17584 0.86099 1.01398 0.86904 1.91562 1.57272 1.93830 1.68165 1.21670 0.89874 0.97693 1.02760 1.21224 1.01351 0.98240 0.88796 1.21282 0.88822 1.01603 0.92977 1.98432 1.45500 1.95930 1.62745 1.22214 0.98196 0.97360 0.82285 1.22184 0.96764 0.96024 0.96767 0.91837 1.21008 0.94005 0.95041 0.86029 1.42710 1.05968 1.69276 1.21306 1.19655 0.90678 1.28072 0.98795 0.90165 1.25599 0.97299 1.03271 1.00989 1.69833 1.12498 1.51561 1.28476 0.85140 0.78348 0.78263 0.78026 1.21536 1.22528 1.19026 0.92182 0.92295 0.89895 0.88491 0.87872 0.82187 0.79649 0.80396 0.93192 0.90951 0.94623 0.94993 0.79876 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.91 71.98 0.57 -1.98 16 2 C -0.09 -1.85 3.65 -9.88 -0.04 -1.88 16 3 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 4 C 0.10 1.84 4.79 86.53 0.41 2.25 16 5 N -0.61 -16.99 3.31 -811.44 -2.69 -19.68 16 6 C 0.57 17.23 7.28 86.77 0.63 17.86 16 7 O -0.56 -21.93 15.38 -3.90 -0.06 -21.99 16 8 C -0.11 -2.34 5.45 -20.07 -0.11 -2.44 16 9 C -0.11 -1.76 7.91 22.57 0.18 -1.58 16 10 C 0.10 1.25 7.29 22.33 0.16 1.41 16 11 F -0.13 -1.70 17.26 44.97 0.78 -0.93 16 12 C -0.10 -0.87 10.02 22.36 0.22 -0.64 16 13 C -0.08 -0.89 9.82 22.25 0.22 -0.67 16 14 C -0.02 -0.38 6.33 22.60 0.14 -0.23 16 15 Cl -0.06 -1.38 26.71 -2.72 -0.07 -1.45 16 16 C 0.12 4.14 6.43 86.53 0.56 4.69 16 17 C -0.10 -3.05 3.09 -9.89 -0.03 -3.08 16 18 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 19 C 0.17 6.17 4.40 86.38 0.38 6.55 16 20 N -0.75 -38.08 5.48 -343.45 -1.88 -39.96 16 21 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 22 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 25 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 H 0.06 1.15 6.77 -2.38 -0.02 1.14 16 30 H 0.06 1.18 6.87 -2.39 -0.02 1.16 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.45 7.64 -2.39 -0.02 1.44 16 33 H 0.10 1.43 6.48 -2.39 -0.02 1.42 16 34 H 0.16 2.19 6.37 -2.91 -0.02 2.17 16 35 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 36 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.05 2.05 7.85 -2.39 -0.02 2.03 16 38 H 0.07 2.53 7.76 -2.39 -0.02 2.51 16 39 H 0.04 1.30 6.58 -2.39 -0.02 1.29 16 40 H 0.03 1.16 6.88 -2.39 -0.02 1.15 16 41 H 0.37 20.56 7.61 -92.71 -0.71 19.85 16 42 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.91 359.40 3.36 -71.56 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.36 Total: 21.20 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.61 Total: 3.55 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -4.29 Total: -120.59 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.07 Total: -1.45 kcal Total: -74.91 3.36 -71.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271674017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.715 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds