Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 N 1.46499 * 109.47232 * 175.00202 * 4 2 1 6 6 C 1.34775 * 120.00008 * 180.02562 * 5 4 2 7 7 O 1.21562 * 120.00531 * 0.02562 * 6 5 4 8 8 C 1.47736 * 119.99683 * 180.02562 * 6 5 4 9 9 C 1.39649 * 120.11816 * 359.72466 * 8 6 5 10 10 C 1.37832 * 119.87629 * 179.74026 * 9 8 6 11 11 C 1.38657 * 120.11916 * 0.51202 * 10 9 8 12 12 F 1.35101 * 119.87790 * 179.74014 * 11 10 9 13 13 C 1.38651 * 120.23730 * 359.76582 * 11 10 9 14 14 C 1.37832 * 120.12124 * 359.97438 * 13 11 10 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 30 30 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 31 31 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 32 32 H 1.09001 * 109.46928 * 55.00843 * 4 2 1 33 33 H 0.97008 * 119.99625 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.06062 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.94258 * 180.25266 * 10 9 8 36 36 H 1.08010 * 119.93614 * 179.97438 * 13 11 10 37 37 H 1.08001 * 120.05751 * 179.97438 * 14 13 11 38 38 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 39 39 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 40 40 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 41 41 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1730 -1.4289 2.1908 7 8 3.5685 -1.8858 3.1414 8 6 5.6454 -1.5343 2.1319 9 6 6.3419 -1.0155 1.0383 10 6 7.7160 -1.1118 0.9910 11 6 8.4059 -1.7320 2.0215 12 9 9.7524 -1.8283 1.9677 13 6 7.7188 -2.2539 3.1068 14 6 6.3451 -2.1583 3.1668 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 3.2133 -2.3910 -9.0612 26 1 4.2963 -0.5027 -10.1307 27 1 5.4899 -1.8026 -8.4679 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.7516 -0.1582 2.1369 32 1 1.6055 -1.7197 1.2951 33 1 3.9824 -0.4620 0.4319 34 1 5.8051 -0.5363 0.2330 35 1 8.2560 -0.7073 0.1477 36 1 8.2611 -2.7363 3.9067 37 1 5.8109 -2.5656 4.0125 38 1 2.2491 -1.6317 -1.1525 39 1 3.6494 -1.1203 -3.3979 40 1 1.9778 -1.5509 -3.8325 41 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284187787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -98.825681 kcal Electronic energy + Delta-G solvation = -25710.325386 eV Core-core repulsion = 21630.704101 eV Total energy + Delta-G solvation = -4079.621285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.37146 -40.63638 -39.52941 -38.47350 -36.44888 -34.05630 -32.48035 -31.90178 -31.53089 -30.95292 -28.67011 -26.77921 -25.53504 -23.92497 -23.37083 -21.89776 -20.86529 -20.45123 -18.72256 -17.97560 -17.67910 -17.07864 -16.68253 -16.20914 -16.06513 -15.87528 -15.45277 -15.21232 -14.97852 -14.84847 -14.40869 -14.21577 -14.06794 -13.62239 -13.42620 -13.25271 -13.12577 -13.03452 -12.93497 -12.61700 -12.48956 -12.12244 -11.92190 -11.52458 -11.22949 -11.09841 -11.07760 -10.81179 -10.37059 -9.88069 -9.67164 -9.59598 -9.47171 -9.17959 -9.13527 -9.07676 -8.31134 -6.56527 -6.26730 -3.98045 0.22448 0.72966 2.36002 2.69273 2.92281 2.97908 3.19914 3.23942 3.26551 3.30481 3.60947 3.70644 4.15560 4.17659 4.25953 4.35614 4.38742 4.69242 4.80110 4.84316 5.01618 5.07961 5.08904 5.26739 5.29589 5.39694 5.42861 5.48593 5.58655 5.58867 5.66434 5.75926 5.79134 5.85785 5.94035 6.05560 6.12064 6.29491 6.48566 7.07947 7.53758 7.55779 7.80044 8.29774 8.47482 9.18713 10.80555 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.002702 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.403294 B =10359.194616 C =12944.895283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.724 5.724 6 C 0.562 3.438 7 O -0.537 6.537 8 C -0.149 4.149 9 C -0.054 4.054 10 C -0.158 4.158 11 C 0.125 3.875 12 F -0.134 7.134 13 C -0.163 4.163 14 C -0.031 4.031 15 N -0.739 5.739 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.399 0.601 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.584 -6.752 22.165 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.376 5.376 6 C 0.349 3.651 7 O -0.415 6.415 8 C -0.152 4.152 9 C -0.073 4.073 10 C -0.177 4.177 11 C 0.106 3.894 12 F -0.112 7.112 13 C -0.182 4.182 14 C -0.049 4.049 15 N -0.394 5.394 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.306 4.306 19 S 0.168 5.832 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.241 0.759 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.233 0.767 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.684 -4.940 22.603 23.428 hybrid contribution 1.357 -2.382 -1.278 3.025 sum 5.041 -7.322 21.325 23.103 Atomic orbital electron populations 1.22114 0.94016 1.02610 1.03279 1.21154 0.95171 0.97893 0.83215 0.88594 1.21758 0.79376 1.01835 0.98122 1.45921 1.08048 1.59786 1.23890 1.18123 0.86834 0.77824 0.82289 1.90788 1.69738 1.47856 1.33097 1.19997 0.93300 1.04649 0.97257 1.21244 0.93593 0.95747 0.96673 1.21172 0.94818 1.02214 0.99482 1.18011 0.77165 0.98463 0.95799 1.91539 1.29321 1.93954 1.96413 1.21160 0.94795 1.03487 0.98758 1.21126 0.92696 0.93717 0.97404 1.46178 1.69645 1.14071 1.09525 1.20353 0.76824 0.87233 0.83680 1.90715 1.47964 1.15732 1.84241 1.23549 1.03648 1.04976 0.98388 1.85399 1.86324 1.12705 0.98754 1.22819 1.51133 0.98181 0.96434 0.90977 1.24986 0.95036 0.95526 0.97944 1.69996 1.45373 1.13216 1.21668 0.86234 0.79337 0.80030 0.79967 1.19917 1.20790 1.19915 0.92145 0.91451 0.90984 0.89690 0.90485 0.75880 0.84359 0.83650 0.83914 0.83552 0.76704 0.89257 0.89182 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.13 1.25 2.73 -67.94 -0.19 1.06 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.11 0.92 5.23 -4.05 -0.02 0.90 16 5 N -0.72 -6.10 5.34 -61.29 -0.33 -6.43 16 6 C 0.56 5.70 7.77 -12.38 -0.10 5.60 16 7 O -0.54 -7.04 16.34 5.31 0.09 -6.95 16 8 C -0.15 -1.31 5.87 -104.96 -0.62 -1.92 16 9 C -0.05 -0.41 9.54 -39.20 -0.37 -0.79 16 10 C -0.16 -1.23 10.01 -39.58 -0.40 -1.63 16 11 C 0.13 1.04 7.31 -39.27 -0.29 0.75 16 12 F -0.13 -1.23 17.26 2.25 0.04 -1.19 16 13 C -0.16 -1.19 10.01 -39.58 -0.40 -1.59 16 14 C -0.03 -0.25 9.59 -39.20 -0.38 -0.62 16 15 N -0.74 -8.10 4.52 -53.81 -0.24 -8.34 16 16 C 0.53 8.69 7.81 -10.98 -0.09 8.61 16 17 O -0.51 -10.43 15.53 5.56 0.09 -10.35 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.63 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.55 13.22 55.49 0.73 -24.81 16 24 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 3.08 6.17 -40.82 -0.25 2.83 16 34 H 0.14 0.86 6.40 -52.49 -0.34 0.52 16 35 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.15 1.10 7.65 -52.49 -0.40 0.70 16 38 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 39 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -34.66 375.78 -8.34 -43.00 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.08 Total: 3.18 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.06 Total: -5.92 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.16 Total: -39.58 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.66 -8.34 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284187787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.822 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds