Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 N 1.46499 * 109.47232 * 175.00202 * 4 2 1 6 6 C 1.34775 * 120.00008 * 180.02562 * 5 4 2 7 7 O 1.21562 * 120.00531 * 0.02562 * 6 5 4 8 8 C 1.47736 * 119.99683 * 180.02562 * 6 5 4 9 9 C 1.39649 * 120.11816 * 359.72466 * 8 6 5 10 10 C 1.37832 * 119.87629 * 179.74026 * 9 8 6 11 11 C 1.38657 * 120.11916 * 0.51202 * 10 9 8 12 12 F 1.35101 * 119.87790 * 179.74014 * 11 10 9 13 13 C 1.38651 * 120.23730 * 359.76582 * 11 10 9 14 14 C 1.37832 * 120.12124 * 359.97438 * 13 11 10 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 30 30 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 31 31 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 32 32 H 1.09001 * 109.46928 * 55.00843 * 4 2 1 33 33 H 0.97008 * 119.99625 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.06062 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.94258 * 180.25266 * 10 9 8 36 36 H 1.08010 * 119.93614 * 179.97438 * 13 11 10 37 37 H 1.08001 * 120.05751 * 179.97438 * 14 13 11 38 38 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 39 39 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 40 40 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 41 41 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1730 -1.4289 2.1908 7 8 3.5685 -1.8858 3.1414 8 6 5.6454 -1.5343 2.1319 9 6 6.3419 -1.0155 1.0383 10 6 7.7160 -1.1118 0.9910 11 6 8.4059 -1.7320 2.0215 12 9 9.7524 -1.8283 1.9677 13 6 7.7188 -2.2539 3.1068 14 6 6.3451 -2.1583 3.1668 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 3.2133 -2.3910 -9.0612 26 1 4.2963 -0.5027 -10.1307 27 1 5.4899 -1.8026 -8.4679 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.7516 -0.1582 2.1369 32 1 1.6055 -1.7197 1.2951 33 1 3.9824 -0.4620 0.4319 34 1 5.8051 -0.5363 0.2330 35 1 8.2560 -0.7073 0.1477 36 1 8.2611 -2.7363 3.9067 37 1 5.8109 -2.5656 4.0125 38 1 2.2491 -1.6317 -1.1525 39 1 3.6494 -1.1203 -3.3979 40 1 1.9778 -1.5509 -3.8325 41 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284187787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -122.439819 kcal Electronic energy + Delta-G solvation = -25711.349371 eV Core-core repulsion = 21630.704101 eV Total energy + Delta-G solvation = -4080.645271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.03713 -41.41559 -40.67091 -39.20242 -37.44509 -34.96883 -34.56552 -32.87576 -32.17688 -31.70702 -29.98631 -27.63787 -27.50093 -24.59808 -23.98932 -22.84548 -21.63801 -21.54891 -19.90023 -19.30087 -18.46194 -17.94595 -17.81110 -17.18586 -16.86038 -16.73802 -16.66971 -16.32661 -16.30277 -16.00581 -15.74576 -15.12156 -14.76062 -14.69394 -14.54153 -14.27671 -14.02570 -13.98046 -13.77566 -13.71817 -13.27903 -13.16956 -13.14368 -12.95613 -12.85750 -12.59606 -12.12245 -12.03098 -11.72229 -11.19550 -11.11511 -10.92582 -10.29918 -10.25046 -10.24574 -10.18043 -9.82240 -8.63438 -8.33214 -6.10173 -0.42866 0.14571 1.28568 1.44328 1.48062 1.57209 1.63158 1.65018 1.99248 2.26689 2.31665 2.64823 3.01147 3.09320 3.33907 3.53639 3.58351 3.66733 3.81042 3.99867 4.06227 4.13210 4.21030 4.26548 4.35951 4.55232 4.59190 4.66815 4.75040 4.77006 4.84734 4.99791 5.01418 5.05474 5.15961 5.20854 5.35619 5.43532 5.48474 5.69722 6.21097 6.35778 6.49249 7.05067 7.08720 7.25669 8.75406 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.002702 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.403294 B =10359.194616 C =12944.895283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.082 0.918 4 C 0.121 3.879 5 N -0.717 5.717 6 C 0.564 3.436 7 O -0.570 6.570 8 C -0.159 4.159 9 C -0.052 4.052 10 C -0.163 4.163 11 C 0.114 3.886 12 F -0.141 7.141 13 C -0.158 4.158 14 C -0.035 4.035 15 N -0.712 5.712 16 C 0.540 3.460 17 O -0.558 6.558 18 C -0.132 4.132 19 S -0.147 6.147 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.994 3.006 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.262 1.262 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.415 0.585 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -8.814 22.987 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.100 0.900 4 C -0.003 4.003 5 N -0.369 5.369 6 C 0.352 3.648 7 O -0.450 6.450 8 C -0.163 4.163 9 C -0.071 4.071 10 C -0.181 4.181 11 C 0.094 3.906 12 F -0.119 7.119 13 C -0.177 4.177 14 C -0.054 4.054 15 N -0.367 5.367 16 C 0.326 3.674 17 O -0.435 6.435 18 C -0.284 4.284 19 S 0.080 5.920 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.816 3.184 25 H -0.188 1.188 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.247 0.753 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.252 0.748 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.218 -7.038 23.451 24.845 hybrid contribution 1.170 -1.761 -1.391 2.531 sum 5.388 -8.799 22.061 24.354 Atomic orbital electron populations 1.22080 0.93348 1.03420 1.02862 1.21206 0.95603 0.97246 0.82789 0.89951 1.21713 0.79130 1.02195 0.97220 1.45887 1.08218 1.59123 1.23663 1.18281 0.87294 0.77303 0.81918 1.90773 1.70419 1.49473 1.34346 1.20009 0.92686 1.05522 0.98037 1.21360 0.93584 0.95437 0.96679 1.21350 0.94972 1.02032 0.99760 1.18215 0.76971 0.98993 0.96414 1.91523 1.29849 1.94069 1.96489 1.21339 0.94546 1.02877 0.98919 1.21233 0.93020 0.93712 0.97441 1.45885 1.67854 1.14577 1.08345 1.19970 0.76600 0.86509 0.84370 1.90713 1.50247 1.17633 1.84956 1.23400 1.05673 1.03183 0.96110 1.85557 1.86663 1.17051 1.02736 1.23175 1.50735 0.98562 0.96956 0.89960 1.26071 0.95144 0.97083 1.00700 1.70163 1.46878 1.15420 1.22272 0.85065 0.79130 0.77827 0.76372 1.18810 1.20594 1.18609 0.90706 0.89396 0.93909 0.88928 0.89527 0.75297 0.83010 0.82596 0.81968 0.83238 0.74845 0.86897 0.87575 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.48 71.98 0.68 -1.96 16 2 C 0.14 2.35 2.73 44.99 0.12 2.47 16 3 H 0.08 1.74 7.58 -2.39 -0.02 1.72 16 4 C 0.12 1.67 5.23 86.38 0.45 2.12 16 5 N -0.72 -10.57 5.34 -466.10 -2.49 -13.05 16 6 C 0.56 10.52 7.77 86.75 0.67 11.19 16 7 O -0.57 -14.17 16.34 -3.91 -0.06 -14.24 16 8 C -0.16 -2.56 5.87 -20.09 -0.12 -2.68 16 9 C -0.05 -0.71 9.54 22.51 0.21 -0.49 16 10 C -0.16 -2.30 10.01 22.27 0.22 -2.07 16 11 C 0.11 1.74 7.31 22.47 0.16 1.91 16 12 F -0.14 -2.44 17.26 44.97 0.78 -1.66 16 13 C -0.16 -2.08 10.01 22.27 0.22 -1.85 16 14 C -0.04 -0.52 9.59 22.51 0.22 -0.31 16 15 N -0.71 -14.08 4.52 -442.54 -2.00 -16.08 16 16 C 0.54 17.06 7.81 87.66 0.68 17.74 16 17 O -0.56 -22.94 15.53 -3.03 -0.05 -22.98 16 18 C -0.13 -4.71 6.16 71.24 0.44 -4.27 16 19 S -0.15 -7.73 20.57 -56.49 -1.16 -8.90 16 20 C -0.55 -30.03 9.50 67.96 0.65 -29.38 16 21 H 0.08 4.18 7.80 -2.91 -0.02 4.15 16 22 C 0.01 0.83 5.49 84.86 0.47 1.29 16 23 N -0.91 -54.68 13.22 21.65 0.29 -54.39 16 24 Si 0.99 42.43 29.55 68.60 2.03 44.45 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.41 5.32 6.17 -92.70 -0.57 4.75 16 34 H 0.15 1.57 6.40 -2.91 -0.02 1.55 16 35 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.15 2.09 7.65 -2.91 -0.02 2.07 16 38 H 0.41 5.92 8.60 -92.71 -0.80 5.12 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.11 3.45 8.14 -2.40 -0.02 3.43 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.96 375.78 2.14 -74.83 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -0.28 Total: 18.31 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.09 Total: -6.30 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -4.20 Total: -83.52 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.11 Total: -37.22 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.90 kcal Total: -76.96 2.14 -74.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284187787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.611 kcal (2) G-P(sol) polarization free energy of solvation -76.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds