Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 N 1.46499 * 109.47232 * 175.00202 * 4 2 1 6 6 C 1.34775 * 120.00008 * 180.02562 * 5 4 2 7 7 O 1.21542 * 120.00061 * 0.02562 * 6 5 4 8 8 C 1.47858 * 119.99776 * 179.97438 * 6 5 4 9 9 C 1.39593 * 120.13298 * 359.72439 * 8 6 5 10 10 C 1.37947 * 119.90307 * 179.76466 * 9 8 6 11 11 C 1.38342 * 120.17493 * 0.51217 * 10 9 8 12 12 C 1.38547 * 120.26545 * 359.74324 * 11 10 9 13 13 F 1.35103 * 119.95149 * 180.02562 * 12 11 10 14 14 C 1.38209 * 120.09384 * 359.97438 * 12 11 10 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 31 31 H 1.08994 * 109.47323 * 295.00629 * 4 2 1 32 32 H 1.09001 * 109.46928 * 55.00843 * 4 2 1 33 33 H 0.97008 * 119.99625 * 0.02562 * 5 4 2 34 34 H 1.08001 * 120.04716 * 0.02562 * 9 8 6 35 35 H 1.08004 * 119.91045 * 180.23400 * 10 9 8 36 36 H 1.07999 * 119.86284 * 179.76156 * 11 10 9 37 37 H 1.08002 * 120.09067 * 180.02562 * 14 12 11 38 38 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 39 39 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 40 40 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 41 41 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1730 -1.4289 2.1908 7 8 3.5685 -1.8857 3.1412 8 6 5.6465 -1.5354 2.1313 9 6 6.3430 -1.0179 1.0378 10 6 7.7181 -1.1156 0.9895 11 6 8.4078 -1.7344 2.0167 12 6 7.7233 -2.2553 3.1028 13 9 8.4033 -2.8579 4.1027 14 6 6.3461 -2.1584 3.1654 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.9724 -0.9333 -8.4677 24 14 3.1586 1.6548 -7.9018 25 1 4.3772 2.4685 -7.6605 26 1 2.7493 1.7861 -9.3232 27 1 2.0611 2.1350 -7.0243 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7516 -0.1582 2.1369 32 1 1.6055 -1.7197 1.2951 33 1 3.9824 -0.4620 0.4319 34 1 5.8063 -0.5379 0.2328 35 1 8.2574 -0.7118 0.1453 36 1 9.4841 -1.8115 1.9718 37 1 5.8126 -2.5641 4.0123 38 1 2.2491 -1.6317 -1.1525 39 1 3.6494 -1.1203 -3.3979 40 1 1.9778 -1.5509 -3.8325 41 1 4.1164 -0.5889 -9.3630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284192379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -97.868415 kcal Electronic energy + Delta-G solvation = -25758.000714 eV Core-core repulsion = 21678.420940 eV Total energy + Delta-G solvation = -4079.579775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.31162 -40.68295 -39.63546 -38.53718 -36.54406 -34.11772 -32.49937 -32.04831 -31.52365 -30.86404 -28.81809 -26.94367 -25.67604 -24.20972 -23.10306 -21.99845 -20.94896 -20.56322 -18.90001 -17.94187 -17.11737 -16.80486 -16.71144 -16.67077 -16.09759 -16.04977 -15.83007 -15.35342 -15.13595 -14.99993 -14.44651 -14.27769 -14.11418 -13.62382 -13.54823 -13.26416 -13.12041 -13.00137 -12.85280 -12.55136 -12.47089 -12.23686 -12.05013 -11.80578 -11.33770 -11.29730 -11.06459 -10.67482 -10.41481 -9.92184 -9.72105 -9.65136 -9.47074 -9.25578 -9.21566 -9.05826 -8.57902 -6.99341 -6.34723 -4.07302 0.22697 0.67711 2.35118 2.57266 2.68991 2.82609 3.20737 3.27037 3.28179 3.44865 3.56166 3.76581 4.13833 4.23689 4.27144 4.29707 4.51127 4.55938 4.65184 4.76900 4.80502 4.97849 5.04372 5.14207 5.17690 5.25266 5.34805 5.47061 5.48703 5.55513 5.65579 5.67402 5.76276 5.76921 5.87837 5.92127 6.05462 6.29961 6.38316 7.01923 7.43802 7.74087 7.88205 8.33543 8.35850 9.11232 10.74485 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.002548 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.763129 B =10987.189810 C =12976.512239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.113 3.887 5 N -0.722 5.722 6 C 0.561 3.439 7 O -0.533 6.533 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.093 4.093 11 C -0.128 4.128 12 C 0.091 3.909 13 F -0.136 7.136 14 C -0.096 4.096 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.126 4.126 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.405 0.595 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -1.637 22.911 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.011 4.011 5 N -0.375 5.375 6 C 0.348 3.652 7 O -0.410 6.410 8 C -0.111 4.111 9 C -0.113 4.113 10 C -0.111 4.111 11 C -0.147 4.147 12 C 0.072 3.928 13 F -0.114 7.114 14 C -0.116 4.116 15 N -0.392 5.392 16 C 0.318 3.682 17 O -0.389 6.389 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.242 0.758 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.628 -0.032 23.342 23.489 hybrid contribution 0.796 -1.173 -0.618 1.547 sum 3.424 -1.206 22.724 23.012 Atomic orbital electron populations 1.22115 0.93922 1.02711 1.03292 1.21167 0.95225 0.97862 0.83127 0.88558 1.21771 0.79323 1.01935 0.98109 1.45898 1.08036 1.59746 1.23848 1.18121 0.86770 0.77962 0.82367 1.90795 1.69666 1.47553 1.33031 1.19722 0.93159 1.02162 0.96045 1.21460 0.94861 0.97983 0.97031 1.21064 0.93862 0.97800 0.98417 1.21431 1.01474 0.98572 0.93193 1.17555 0.89848 0.98200 0.87199 1.91534 1.79791 1.81074 1.59016 1.21210 0.92143 0.98523 0.99729 1.46141 1.69436 1.14172 1.09465 1.20326 0.76891 0.87227 0.83762 1.90713 1.48160 1.15729 1.84292 1.23295 1.04461 1.03593 0.96280 1.84802 1.87203 1.16641 1.02751 1.22302 1.50450 0.98820 0.95429 0.89384 1.24720 0.93343 0.98292 0.94959 1.69937 1.43222 1.35833 1.02602 0.86736 0.81084 0.84795 0.79232 1.19203 1.19924 1.15933 0.91016 0.92048 0.91383 0.89602 0.90375 0.75813 0.84676 0.83830 0.84061 0.83360 0.76517 0.88513 0.88409 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 2 C 0.13 1.16 2.73 -67.94 -0.19 0.98 16 3 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 4 C 0.11 0.86 5.23 -4.05 -0.02 0.84 16 5 N -0.72 -5.83 5.34 -61.25 -0.33 -6.16 16 6 C 0.56 5.69 7.77 -12.32 -0.10 5.59 16 7 O -0.53 -7.08 16.35 5.33 0.09 -7.00 16 8 C -0.11 -0.96 5.87 -104.97 -0.62 -1.58 16 9 C -0.09 -0.68 9.54 -39.18 -0.37 -1.05 16 10 C -0.09 -0.60 10.03 -39.65 -0.40 -1.00 16 11 C -0.13 -0.89 10.02 -39.43 -0.40 -1.28 16 12 C 0.09 0.79 7.29 -39.48 -0.29 0.50 16 13 F -0.14 -1.28 17.26 2.25 0.04 -1.24 16 14 C -0.10 -0.89 9.57 -39.11 -0.37 -1.26 16 15 N -0.74 -7.48 4.52 -53.81 -0.24 -7.73 16 16 C 0.53 8.08 7.81 -10.98 -0.09 8.00 16 17 O -0.52 -9.79 15.53 5.56 0.09 -9.70 16 18 C -0.13 -2.18 6.16 36.01 0.22 -1.96 16 19 S -0.14 -3.34 18.55 -107.50 -1.99 -5.34 16 20 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 21 H 0.09 2.55 8.03 -52.49 -0.42 2.12 16 22 C 0.10 2.71 5.50 -17.43 -0.10 2.62 16 23 N -0.88 -25.90 13.97 55.49 0.78 -25.12 16 24 Si 0.86 21.09 27.74 -169.99 -4.72 16.38 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.41 2.87 6.17 -40.82 -0.25 2.61 16 34 H 0.14 0.76 6.40 -52.49 -0.34 0.43 16 35 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.15 1.39 7.65 -52.49 -0.40 0.99 16 38 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16 39 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -34.47 373.11 -7.83 -42.30 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.12 Total: 2.77 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.04 Total: -4.79 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.21 Total: -39.00 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.17 Total: -16.69 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.72 Total: 16.38 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.47 -7.83 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284192379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.569 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds