Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 120.00003 * 2 1 4 4 O 1.21279 * 120.00469 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99768 * 359.97438 * 3 2 1 6 6 N 1.46494 * 109.46997 * 179.97438 * 5 3 2 7 7 N 1.28889 * 125.44775 * 90.00019 * 6 5 3 8 8 C 1.31038 * 107.91385 * 179.97438 * 7 6 5 9 9 N 1.33317 * 106.90408 * 0.02562 * 8 7 6 10 10 N 1.28790 * 125.45380 * 269.69660 * 6 5 3 11 11 C 1.46497 * 120.00253 * 180.02562 * 2 1 3 12 12 C 1.53501 * 114.20643 * 299.99976 * 11 2 1 13 13 N 1.47065 * 87.98741 * 87.51773 * 12 11 2 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88381 * 27.34024 * 13 12 11 27 27 H 1.09009 * 109.46887 * 269.99738 * 1 2 3 28 28 H 1.08991 * 109.47315 * 29.99688 * 1 2 3 29 29 H 1.08999 * 109.47063 * 150.00797 * 1 2 3 30 30 H 1.08992 * 109.47164 * 300.00586 * 5 3 2 31 31 H 1.08998 * 109.46891 * 60.00229 * 5 3 2 32 32 H 1.08003 * 126.55008 * 179.97438 * 8 7 6 33 33 H 1.08999 * 113.28436 * 166.92772 * 11 2 1 34 34 H 1.09001 * 113.46643 * 332.73474 * 12 11 2 35 35 H 1.09004 * 113.51834 * 202.30917 * 12 11 2 36 36 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 37 37 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 38 38 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 39 39 H 1.09010 * 113.46411 * 87.43777 * 26 13 12 40 40 H 1.08997 * 113.47100 * 217.87349 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3373 3.5858 0.0002 7 7 2.8238 4.1540 -1.0495 8 6 3.6350 5.1041 -0.6540 9 7 3.6247 5.0928 0.6790 10 7 2.8177 4.1572 1.0496 11 6 2.1976 -1.2687 -0.0006 12 6 1.9061 -2.1643 1.2115 13 7 0.7743 -2.7260 0.4589 14 6 -0.4090 -3.2935 0.7656 15 8 -0.7333 -3.4302 1.9262 16 6 -1.3287 -3.7594 -0.3335 17 16 -2.8253 -4.4718 0.3935 18 6 -3.6946 -4.9190 -1.0725 19 1 -3.2569 -4.7245 -2.0404 20 6 -4.9392 -5.5269 -0.9832 21 7 -5.5888 -5.8606 -2.0783 22 14 -5.6928 -5.8704 0.6912 23 1 -6.5081 -4.7042 1.1158 24 1 -6.5578 -7.0747 0.6071 25 1 -4.6118 -6.1057 1.6818 26 6 1.5048 -2.4016 -0.7756 27 1 -0.3633 0.0000 1.0278 28 1 -0.3633 0.8899 -0.5137 29 1 -0.3633 -0.8901 -0.5137 30 1 0.7590 2.5298 -0.8907 31 1 0.7584 2.5302 0.8892 32 1 4.2041 5.7688 -1.2872 33 1 3.2576 -1.1540 -0.2270 34 1 1.6040 -1.6086 2.0992 35 1 2.6939 -2.8893 1.4161 36 1 -0.8226 -4.5143 -0.9353 37 1 -1.5985 -2.9127 -0.9647 38 1 -6.4587 -6.2851 -2.0159 39 1 2.1873 -3.1890 -1.0957 40 1 0.8609 -2.0481 -1.5809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286014687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = 128.771943 kcal Electronic energy + Delta-G solvation = -26480.881129 eV Core-core repulsion = 22463.341930 eV Total energy + Delta-G solvation = -4017.539199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.68730 -41.43198 -39.75314 -37.87541 -35.45106 -35.19075 -33.42895 -32.53306 -31.07343 -29.85569 -28.31004 -27.26260 -26.21591 -25.67696 -24.32772 -24.12699 -22.28762 -20.35561 -19.11646 -18.52350 -18.18865 -17.82060 -17.20107 -16.93799 -16.62956 -16.21666 -15.90466 -15.54461 -15.37713 -15.01427 -14.36857 -14.26137 -14.08257 -14.00324 -13.76322 -13.31572 -13.18300 -12.97151 -12.89211 -12.58169 -12.34785 -12.25485 -12.18985 -11.54880 -11.46462 -11.34919 -11.32816 -11.09156 -11.04485 -10.72792 -10.42076 -9.95004 -9.68968 -9.32691 -9.09704 -8.90537 -8.62147 -7.04124 -6.37963 -4.11292 0.77640 1.29709 1.74668 1.91563 2.23929 2.39919 2.75577 2.99906 3.25291 3.42643 3.46751 3.52692 3.60737 3.86013 4.00121 4.14024 4.17302 4.25209 4.46888 4.51980 4.56933 4.77020 4.89195 4.95161 5.01111 5.08648 5.11612 5.22434 5.33081 5.34876 5.35131 5.39085 5.59484 5.62557 5.68062 5.84844 5.86647 6.57327 7.30796 7.54637 7.84783 7.99368 8.22998 8.31852 9.07842 10.71079 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022112 B = 0.002179 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.004528 B =12844.345575 C =13316.822279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.584 5.584 3 C 0.512 3.488 4 O -0.518 6.518 5 C 0.112 3.888 6 N -0.129 5.129 7 N -0.301 5.301 8 C 0.146 3.854 9 N -0.284 5.284 10 N -0.048 5.048 11 C 0.105 3.895 12 C 0.095 3.905 13 N -0.653 5.653 14 C 0.560 3.440 15 O -0.511 6.511 16 C -0.117 4.117 17 S -0.140 6.140 18 C -0.523 4.523 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.878 5.878 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.235 1.235 26 C 0.093 3.907 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.237 0.763 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.272 0.728 39 H 0.103 0.897 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.707 17.079 0.218 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.317 5.317 3 C 0.297 3.703 4 O -0.392 6.392 5 C -0.013 4.013 6 N -0.040 5.040 7 N -0.151 5.151 8 C -0.157 4.157 9 N -0.155 5.155 10 N -0.042 5.042 11 C 0.000 4.000 12 C -0.029 4.029 13 N -0.393 5.393 14 C 0.349 3.651 15 O -0.385 6.385 16 C -0.267 4.267 17 S 0.087 5.913 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.514 5.514 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.032 4.032 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.253 0.747 33 H 0.149 0.851 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.206 16.403 2.461 23.190 hybrid contribution -0.099 -0.085 -1.458 1.464 sum 16.107 16.318 1.003 22.950 Atomic orbital electron populations 1.22120 0.77793 1.04329 1.03597 1.47299 1.07534 1.04327 1.72498 1.20182 0.88109 0.84825 0.77235 1.90820 1.13209 1.86741 1.48476 1.22062 0.88975 0.80722 1.09499 1.49516 1.29801 1.23472 1.01214 1.74721 1.14098 1.10665 1.15572 1.27375 0.98975 0.97914 0.91414 1.75899 1.14073 1.13618 1.11906 1.79029 1.07115 1.04113 1.13971 1.22404 0.97747 0.82253 0.97565 1.23364 0.88232 0.94474 0.96871 1.49795 1.16515 1.62970 1.10020 1.19923 0.79490 0.75420 0.90226 1.90735 1.73417 1.53494 1.20815 1.23238 0.99700 1.04116 0.99692 1.84851 1.14625 1.77764 1.14088 1.22275 1.06150 1.46606 0.91998 0.89368 1.24712 0.95716 0.93661 0.97176 1.69931 1.14363 1.39587 1.27568 0.86745 0.81383 0.79057 0.84730 1.19156 1.19853 1.15945 1.23445 0.94440 0.95262 0.90022 0.91119 0.90555 0.89374 0.83323 0.83230 0.74692 0.85085 0.89980 0.88511 0.88494 0.88730 0.91844 0.87873 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 9.34 59.85 0.56 0.95 16 2 N -0.58 -4.14 3.12 -173.55 -0.54 -4.68 16 3 C 0.51 4.26 7.74 -10.98 -0.09 4.17 16 4 O -0.52 -6.44 15.94 5.56 0.09 -6.35 16 5 C 0.11 0.64 5.64 -5.19 -0.03 0.61 16 6 N -0.13 -1.22 3.49 -11.72 -0.04 -1.26 16 7 N -0.30 -2.91 12.13 29.34 0.36 -2.56 16 8 C 0.15 1.24 13.26 -91.58 -1.21 0.03 16 9 N -0.28 -3.17 12.50 29.33 0.37 -2.80 16 10 N -0.05 -0.55 13.25 60.35 0.80 0.25 16 11 C 0.11 0.76 4.69 -67.67 -0.32 0.44 16 12 C 0.09 0.84 8.24 -8.51 -0.07 0.77 16 13 N -0.65 -7.24 2.41 -185.07 -0.45 -7.69 16 14 C 0.56 9.01 7.68 -10.99 -0.08 8.92 16 15 O -0.51 -10.38 16.64 5.56 0.09 -10.29 16 16 C -0.12 -2.06 5.98 36.00 0.22 -1.84 16 17 S -0.14 -3.33 18.55 -107.50 -1.99 -5.33 16 18 C -0.52 -14.34 10.04 30.94 0.31 -14.03 16 19 H 0.09 2.52 8.03 -52.49 -0.42 2.10 16 20 C 0.10 2.71 5.50 -17.43 -0.10 2.62 16 21 N -0.88 -25.61 13.97 55.49 0.78 -24.84 16 22 Si 0.86 20.98 27.74 -169.99 -4.72 16.27 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 26 C 0.09 0.67 7.45 -8.38 -0.06 0.61 16 27 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.08 0.22 6.44 -51.93 -0.33 -0.11 16 29 H 0.09 0.67 5.36 -51.93 -0.28 0.39 16 30 H 0.15 0.40 7.40 -51.93 -0.38 0.01 16 31 H 0.15 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.24 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.13 0.92 7.29 -51.93 -0.38 0.54 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 37 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.09 0.58 7.27 -51.93 -0.38 0.20 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -38.87 361.36 -5.40 -44.27 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.71 Total: -3.69 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -0.87 Total: 3.25 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 1.27 Total: -43.58 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.18 Total: -16.64 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.72 Total: 16.27 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.87 -5.40 -44.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286014687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.042 kcal (2) G-P(sol) polarization free energy of solvation -38.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds