Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28720 * 125.32303 * 2 1 4 4 N 1.28982 * 108.99261 * 179.68856 * 3 2 1 5 5 C 1.34191 * 107.24637 * 0.42901 * 4 3 2 6 6 C 1.48010 * 126.69657 * 179.83418 * 5 4 3 7 7 O 1.21534 * 119.99963 * 179.69032 * 6 5 4 8 8 N 1.34784 * 119.99826 * 359.69159 * 6 5 4 9 9 C 1.47421 * 125.64843 * 359.69465 * 8 6 5 10 10 C 1.55129 * 104.72458 * 155.81647 * 9 8 6 11 11 C 1.55159 * 101.48377 * 37.29063 * 10 9 8 12 12 H 1.08999 * 110.71607 * 82.70057 * 11 10 9 13 13 N 1.46499 * 110.87029 * 205.89921 * 11 10 9 14 14 C 1.34781 * 119.99772 * 200.06679 * 13 11 10 15 15 O 1.21283 * 119.99767 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00001 * 180.02562 * 14 13 11 17 17 S 1.80997 * 109.47310 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00059 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99804 * 0.02562 * 18 17 16 20 20 C 1.38794 * 119.99852 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00130 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47245 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47045 * 120.00176 * 22 20 18 25 25 H 1.48507 * 109.47037 * 239.99674 * 22 20 18 26 26 C 1.47018 * 125.64722 * 179.97438 * 8 6 5 27 27 N 1.28875 * 125.32150 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47481 * 270.04265 * 1 2 3 29 29 H 1.09001 * 109.47411 * 30.03963 * 1 2 3 30 30 H 1.09004 * 109.47310 * 150.04353 * 1 2 3 31 31 H 1.09005 * 110.36058 * 274.74476 * 9 8 6 32 32 H 1.08997 * 110.36930 * 37.06604 * 9 8 6 33 33 H 1.09004 * 111.19138 * 279.18827 * 10 9 8 34 34 H 1.08993 * 110.94122 * 155.28725 * 10 9 8 35 35 H 0.96996 * 120.00063 * 20.06849 * 13 11 10 36 36 H 1.09000 * 109.46996 * 300.00496 * 16 14 13 37 37 H 1.09007 * 109.47008 * 59.99367 * 16 14 13 38 38 H 0.97006 * 119.99750 * 179.97438 * 21 20 18 39 39 H 1.09010 * 109.88204 * 300.44210 * 26 8 6 40 40 H 1.09004 * 109.88434 * 61.44920 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4469 0.6876 0.0066 5 6 3.4684 -0.6541 0.0013 6 6 4.6692 -1.5195 0.0023 7 8 4.5468 -2.7287 0.0027 8 7 5.8984 -0.9665 0.0027 9 6 6.1904 0.4785 -0.0041 10 6 7.6084 0.5970 0.6137 11 6 8.3058 -0.6602 0.0301 12 1 8.6734 -0.4645 -0.9772 13 7 9.3971 -1.1033 0.9012 14 6 10.3704 -1.8968 0.4115 15 8 10.3423 -2.2443 -0.7501 16 6 11.4927 -2.3531 1.3077 17 16 12.6307 -3.3982 0.3649 18 6 13.8085 -3.7773 1.6194 19 1 13.6823 -3.3809 2.6161 20 6 14.8984 -4.5853 1.3267 21 7 15.0524 -5.0679 0.1118 22 14 16.1466 -4.9878 2.6569 23 1 15.7484 -4.3270 3.9257 24 1 16.1981 -6.4581 2.8588 25 1 17.4861 -4.4978 2.2433 26 6 7.1699 -1.7045 0.0041 27 7 2.2100 -1.0515 0.0005 28 1 -0.3634 0.0008 1.0277 29 1 -0.3634 0.8896 -0.5144 30 1 -0.3634 -0.8904 -0.5132 31 1 6.1854 0.8616 -1.0246 32 1 5.4648 1.0151 0.6070 33 1 7.5690 0.5521 1.7021 34 1 8.1037 1.5088 0.2801 35 1 9.4193 -0.8257 1.8303 36 1 12.0286 -1.4843 1.6899 37 1 11.0829 -2.9230 2.1417 38 1 15.8144 -5.6324 -0.0928 39 1 7.2292 -2.3391 0.8885 40 1 7.2453 -2.3150 -0.8958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293606244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = 47.808706 kcal Electronic energy + Delta-G solvation = -25821.633806 eV Core-core repulsion = 21800.583778 eV Total energy + Delta-G solvation = -4021.050028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.60667 -41.49164 -40.47665 -38.62525 -36.38982 -35.36048 -34.56884 -34.40558 -32.38413 -30.73881 -30.20817 -28.94718 -27.65205 -26.61830 -24.54294 -24.04272 -22.42828 -21.87508 -21.18094 -19.86169 -19.16684 -18.80618 -18.08360 -17.96124 -17.54461 -17.21654 -16.86793 -16.64762 -16.38424 -15.83797 -15.38227 -15.34558 -14.76826 -14.67369 -14.46210 -14.33867 -14.19607 -14.01585 -13.74765 -13.47330 -13.25278 -13.14277 -12.94826 -12.90790 -12.69030 -12.56094 -12.33124 -12.29861 -11.82973 -11.71106 -11.67941 -11.51546 -11.14584 -10.97000 -10.25727 -10.24236 -9.97147 -8.64330 -8.33454 -6.10873 -0.24466 0.18994 0.69936 1.26893 1.41181 1.42360 1.50580 1.59483 1.63207 1.74929 2.23639 2.29509 2.62180 2.95296 3.01032 3.31340 3.41727 3.49361 3.82289 3.98354 4.01087 4.03732 4.15236 4.22818 4.28630 4.34788 4.46224 4.55058 4.57472 4.62393 4.73071 4.79035 4.93294 4.95601 5.04127 5.14974 5.43831 5.44631 6.03134 6.21584 6.49427 6.56293 6.96723 7.08346 7.23813 8.75934 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.036413 B = 0.001768 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.780033 B =15831.235634 C =16085.950265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.058 5.058 4 N -0.255 5.255 5 C 0.121 3.879 6 C 0.624 3.376 7 O -0.551 6.551 8 N -0.590 5.590 9 C 0.095 3.905 10 C -0.120 4.120 11 C 0.140 3.860 12 H 0.098 0.902 13 N -0.701 5.701 14 C 0.537 3.463 15 O -0.560 6.560 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.274 1.274 26 C 0.099 3.901 27 N -0.266 5.266 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.421 0.579 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.270 0.730 39 H 0.071 0.929 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.369 19.076 4.692 36.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.029 5.029 3 N -0.051 5.051 4 N -0.130 5.130 5 C -0.162 4.162 6 C 0.407 3.593 7 O -0.426 6.426 8 N -0.323 5.323 9 C -0.026 4.026 10 C -0.158 4.158 11 C 0.034 3.966 12 H 0.116 0.884 13 N -0.356 5.356 14 C 0.323 3.677 15 O -0.437 6.437 16 C -0.281 4.281 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.199 1.199 26 C -0.025 4.025 27 N -0.121 5.121 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.850 18.271 2.664 35.953 hybrid contribution 1.014 -0.808 1.914 2.312 sum -29.836 17.463 4.578 34.873 Atomic orbital electron populations 1.23288 0.64893 1.09513 1.08793 1.50797 1.12735 0.99372 1.39946 1.78868 0.96242 1.14387 1.15614 1.76130 1.10722 1.09163 1.16964 1.24784 0.92720 0.90579 1.08146 1.15878 0.80558 0.85036 0.77778 1.90862 1.85710 1.14616 1.51401 1.48082 1.03498 1.10372 1.70365 1.22923 0.97741 0.78369 1.03578 1.23184 0.92935 0.97161 1.02516 1.21909 0.84891 0.93379 0.96449 0.88398 1.45640 1.23437 1.51160 1.15344 1.20103 0.82571 0.77532 0.87476 1.90716 1.77215 1.56368 1.19443 1.23380 0.98214 1.04310 1.02244 1.85605 1.25653 1.62403 1.18942 1.23250 1.11139 1.36627 0.98255 0.89797 1.26118 0.99705 0.94642 0.98727 1.70193 1.30383 1.32810 1.21448 0.84911 0.77138 0.78068 0.77861 1.17944 1.20144 1.19926 1.22450 0.81950 0.95632 1.02473 1.75080 1.02485 1.15738 1.18813 0.85104 0.83672 0.85247 0.89175 0.87182 0.87768 0.85745 0.74035 0.86689 0.87245 0.92052 0.91016 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.04 11.62 127.77 1.49 1.44 16 2 N -0.11 -1.46 4.39 -206.59 -0.91 -2.37 16 3 N -0.06 -0.92 13.23 37.02 0.49 -0.43 16 4 N -0.26 -4.89 9.67 -52.36 -0.51 -5.40 16 5 C 0.12 2.78 7.96 137.15 1.09 3.88 16 6 C 0.62 16.95 7.87 86.83 0.68 17.63 16 7 O -0.55 -19.37 17.42 -3.82 -0.07 -19.44 16 8 N -0.59 -12.99 3.32 -814.56 -2.71 -15.70 16 9 C 0.10 1.32 6.18 86.93 0.54 1.86 16 10 C -0.12 -1.25 6.71 32.06 0.22 -1.03 16 11 C 0.14 2.76 3.23 46.18 0.15 2.91 16 12 H 0.10 2.24 7.69 -2.39 -0.02 2.23 16 13 N -0.70 -15.46 5.13 -436.92 -2.24 -17.70 16 14 C 0.54 18.59 7.84 87.66 0.69 19.28 16 15 O -0.56 -24.91 15.59 -3.04 -0.05 -24.96 16 16 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 17 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 18 C -0.54 -30.93 9.50 67.95 0.65 -30.28 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 22 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.10 2.42 6.61 86.73 0.57 2.99 16 27 N -0.27 -5.56 12.17 -52.31 -0.64 -6.19 16 28 H 0.13 -0.60 8.14 -2.38 -0.02 -0.62 16 29 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.13 -0.36 8.14 -2.38 -0.02 -0.38 16 31 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.11 1.42 6.16 -2.39 -0.01 1.40 16 33 H 0.10 0.77 8.01 -2.39 -0.02 0.76 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 6.14 8.53 -92.71 -0.79 5.34 16 36 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 39 H 0.07 1.88 8.03 -2.38 -0.02 1.86 16 40 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -90.22 364.45 1.81 -88.42 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.31 Total: 8.22 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.97 Total: 15.36 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -6.23 Total: -103.66 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.11 Total: -44.40 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -90.22 1.81 -88.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293606244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.224 kcal (2) G-P(sol) polarization free energy of solvation -90.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds