Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46877 * 2 1 4 4 C 1.34647 * 117.00418 * 179.97438 * 3 2 1 5 5 O 1.21409 * 119.99354 * 359.97438 * 4 3 2 6 6 C 1.48227 * 120.00211 * 179.97438 * 4 3 2 7 7 C 1.42070 * 126.83466 * 179.97438 * 6 4 3 8 8 C 1.36858 * 103.78499 * 180.02562 * 7 6 4 9 9 C 1.47285 * 126.84283 * 179.97438 * 8 7 6 10 10 O 1.21641 * 120.00095 * 354.26943 * 9 8 7 11 11 N 1.34772 * 119.99547 * 174.26254 * 9 8 7 12 12 C 1.36666 * 120.00316 * 4.91422 * 11 9 8 13 13 H 1.07999 * 119.99826 * 319.34896 * 12 11 9 14 14 C 1.39171 * 120.00090 * 139.35210 * 12 11 9 15 15 N 1.31289 * 120.00485 * 166.32532 * 14 12 11 16 16 Si 1.86804 * 120.00197 * 346.32573 * 14 12 11 17 17 H 1.48505 * 109.46961 * 91.65073 * 16 14 12 18 18 H 1.48498 * 109.47341 * 211.65059 * 16 14 12 19 19 H 1.48497 * 109.46974 * 331.65514 * 16 14 12 20 20 C 1.46504 * 119.99905 * 184.91044 * 11 9 8 21 21 C 1.53000 * 109.47122 * 85.01078 * 20 11 9 22 22 C 1.50701 * 109.47594 * 180.02562 * 21 20 11 23 23 O 1.20827 * 119.99144 * 0.02562 * 22 21 20 24 24 O 1.34220 * 120.00231 * 179.97438 * 22 21 20 25 25 C 1.45201 * 117.00059 * 179.97438 * 24 22 21 26 26 O 1.34649 * 106.31356 * 0.22802 * 8 7 6 27 27 N 1.20874 * 111.73772 * 359.58833 * 26 8 7 28 28 H 1.09006 * 109.46535 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47750 * 299.99772 * 1 2 3 30 30 H 1.08994 * 109.47268 * 60.00365 * 1 2 3 31 31 H 1.08997 * 109.47750 * 240.00228 * 2 1 3 32 32 H 1.09000 * 109.47049 * 119.99282 * 2 1 3 33 33 H 1.08003 * 128.10893 * 0.02562 * 7 6 4 34 34 H 0.97002 * 120.00412 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.47472 * 205.00676 * 20 11 9 36 36 H 1.09002 * 109.46854 * 325.01124 * 20 11 9 37 37 H 1.09008 * 109.46866 * 299.99914 * 21 20 11 38 38 H 1.09001 * 109.47599 * 59.99394 * 21 20 11 39 39 H 1.08994 * 109.47023 * 60.00185 * 25 24 22 40 40 H 1.08995 * 109.47364 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.47151 * 300.00698 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5456 0.0005 5 8 4.0884 0.5828 0.0015 6 6 3.9153 2.9154 0.0000 7 6 5.2915 3.2679 0.0010 8 6 5.2776 4.6364 0.0005 9 6 6.4473 5.5315 0.0016 10 8 7.5671 5.0688 0.1084 11 7 6.2767 6.8633 -0.1157 12 6 5.0165 7.3918 -0.1346 13 1 4.2304 6.8941 -0.6831 14 6 4.7461 8.5713 0.5528 15 7 3.6292 9.2226 0.3251 16 14 5.9726 9.2279 1.7995 17 1 6.9067 10.1667 1.1278 18 1 5.2459 9.9413 2.8803 19 1 6.7401 8.0976 2.3814 20 6 7.4422 7.7444 -0.2228 21 6 7.8908 7.8213 -1.6836 22 6 9.0901 8.7272 -1.7938 23 8 9.5401 9.2566 -0.8053 24 8 9.6589 8.9451 -2.9898 25 6 10.8102 9.8293 -3.0210 26 8 3.9815 5.0015 0.0045 27 7 3.2462 4.0421 -0.0009 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 6.1481 2.6101 0.0018 34 1 3.4406 10.0445 0.8045 35 1 7.1774 8.7415 0.1288 36 1 8.2545 7.3480 0.3864 37 1 8.1557 6.8241 -2.0353 38 1 7.0785 8.2175 -2.2929 39 1 11.6000 9.4197 -2.3914 40 1 11.1717 9.9193 -4.0453 41 1 10.5230 10.8130 -2.6496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001302618569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -122.054362 kcal Electronic energy + Delta-G solvation = -29373.311691 eV Core-core repulsion = 24837.557475 eV Total energy + Delta-G solvation = -4535.754217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.66265 -40.36527 -40.33972 -39.09550 -36.75685 -36.46884 -35.53566 -33.74244 -32.61248 -32.04802 -31.73438 -30.75686 -27.76500 -25.64471 -25.37767 -24.88088 -23.04315 -22.69952 -21.61085 -20.65609 -19.85783 -18.57286 -17.61521 -17.52967 -17.41039 -16.68413 -16.54429 -16.52126 -16.39115 -15.94719 -15.58279 -15.24720 -14.43289 -14.25066 -14.10265 -13.96811 -13.62657 -13.34606 -13.28333 -13.00183 -12.83748 -12.63362 -12.51609 -12.20016 -12.17199 -11.88527 -11.82142 -11.48272 -11.35583 -10.99035 -10.87920 -10.73726 -10.71088 -10.39109 -10.33711 -10.24710 -10.03730 -9.69038 -9.33478 -9.14560 -8.21763 -6.71697 -4.41095 1.08311 1.43236 2.31893 2.39514 2.77351 2.93749 2.99464 3.12506 3.18165 3.22114 3.68365 3.89368 4.02654 4.07389 4.68690 4.72573 4.75594 4.86109 4.99964 5.04674 5.10377 5.16765 5.18349 5.31259 5.36981 5.42810 5.49565 5.53815 5.56921 5.66896 5.77770 5.84941 6.06306 6.10843 6.19931 6.29672 6.50871 6.95235 7.53901 7.69538 7.89936 7.98074 8.22082 8.60627 8.91501 9.17051 10.35797 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002901 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.760387 B = 9651.023414 C =10817.327715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.341 6.341 4 C 0.561 3.439 5 O -0.494 6.494 6 C -0.039 4.039 7 C -0.140 4.140 8 C -0.024 4.024 9 C 0.544 3.456 10 O -0.567 6.567 11 N -0.432 5.432 12 C -0.360 4.360 13 H 0.124 0.876 14 C 0.079 3.921 15 N -0.836 5.836 16 Si 0.873 3.127 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.256 1.256 20 C 0.109 3.891 21 C -0.125 4.125 22 C 0.468 3.532 23 O -0.510 6.510 24 O -0.361 6.361 25 C 0.035 3.965 26 O 0.189 5.811 27 N -0.312 5.312 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.187 0.813 34 H 0.282 0.718 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -6.857 -4.245 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.257 6.257 4 C 0.403 3.597 5 O -0.379 6.379 6 C -0.192 4.192 7 C -0.164 4.164 8 C -0.089 4.089 9 C 0.332 3.668 10 O -0.452 6.452 11 N -0.150 5.150 12 C -0.487 4.487 13 H 0.142 0.858 14 C -0.133 4.133 15 N -0.469 5.469 16 Si 0.699 3.301 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.180 1.180 20 C -0.014 4.014 21 C -0.163 4.163 22 C 0.311 3.689 23 O -0.397 6.397 24 O -0.278 6.278 25 C -0.059 4.059 26 O 0.101 5.899 27 N -0.005 5.005 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.204 0.796 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.549 -6.887 -3.868 7.918 hybrid contribution 1.237 0.181 0.648 1.408 sum 1.786 -6.707 -3.220 7.651 Atomic orbital electron populations 1.21812 0.92303 1.02941 1.03928 1.23126 0.95640 0.79607 1.02826 1.86634 1.22862 1.32602 1.83646 1.19475 0.80822 0.86840 0.72565 1.90842 1.60636 1.40796 1.45668 1.22045 0.92055 0.91823 1.13321 1.22556 0.95871 0.93689 1.04300 1.24245 0.85686 0.93970 1.05023 1.16682 0.85048 0.82179 0.82897 1.90767 1.22391 1.75851 1.56189 1.43582 1.06872 1.03928 1.60609 1.19429 0.85256 1.10140 1.33896 0.85846 1.25397 0.96254 0.95844 0.95811 1.69605 1.23948 1.15244 1.38120 0.87008 0.80926 0.80484 0.81658 1.18966 1.20900 1.18015 1.21605 0.89782 0.95886 0.94088 1.21761 0.93757 0.99686 1.01112 1.23858 0.84254 0.79946 0.80804 1.90661 1.62828 1.48329 1.37892 1.86526 1.44206 1.62674 1.34362 1.23221 0.86255 0.93164 1.03276 1.85477 1.14099 1.27549 1.62750 1.74264 1.19364 0.94886 1.12036 0.90095 0.91261 0.91251 0.90917 0.90927 0.79604 0.90711 0.89669 0.89470 0.87104 0.86377 0.92016 0.88333 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.34 -5.07 10.23 -40.35 -0.41 -5.48 16 4 C 0.56 9.29 7.99 34.84 0.28 9.57 16 5 O -0.49 -8.53 16.73 -19.20 -0.32 -8.85 16 6 C -0.04 -0.70 7.22 -82.63 -0.60 -1.29 16 7 C -0.14 -2.51 10.78 -38.61 -0.42 -2.92 16 8 C -0.02 -0.48 6.93 -36.41 -0.25 -0.73 16 9 C 0.54 11.66 7.59 -12.58 -0.10 11.56 16 10 O -0.57 -12.73 16.55 5.24 0.09 -12.65 16 11 N -0.43 -9.40 2.17 -116.10 -0.25 -9.66 16 12 C -0.36 -8.47 8.58 -15.05 -0.13 -8.60 16 13 H 0.12 3.04 6.04 -52.49 -0.32 2.72 16 14 C 0.08 1.91 5.40 -17.44 -0.09 1.81 16 15 N -0.84 -21.23 13.95 55.51 0.77 -20.46 16 16 Si 0.87 19.31 24.74 -169.99 -4.21 15.11 16 17 H -0.26 -5.73 6.64 56.52 0.38 -5.36 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.26 -5.77 7.08 56.52 0.40 -5.37 16 20 C 0.11 2.21 3.19 -4.04 -0.01 2.20 16 21 C -0.12 -2.10 6.10 -27.88 -0.17 -2.27 16 22 C 0.47 7.83 7.96 36.01 0.29 8.12 16 23 O -0.51 -9.78 15.73 -18.75 -0.29 -10.08 16 24 O -0.36 -5.17 10.56 -39.23 -0.41 -5.58 16 25 C 0.03 0.37 10.56 101.05 1.07 1.44 16 26 O 0.19 3.90 8.17 15.53 0.13 4.02 16 27 N -0.31 -6.11 12.09 33.36 0.40 -5.71 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.19 2.99 8.06 -52.48 -0.42 2.57 16 34 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.09 1.82 3.16 -51.93 -0.16 1.66 16 36 H 0.09 1.80 7.47 -51.93 -0.39 1.41 16 37 H 0.11 1.75 8.14 -51.92 -0.42 1.33 16 38 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -29.05 364.96 -3.21 -32.26 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.68 Total: 2.63 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 0.48 Total: 18.94 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.93 Total: -35.82 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.23 Total: -38.61 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.21 Total: 15.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.05 -3.21 -32.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302618569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.795 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds