Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45205 * 109.46877 * 2 1 4 4 C 1.34647 * 117.00418 * 179.97438 * 3 2 1 5 5 O 1.21409 * 119.99354 * 359.97438 * 4 3 2 6 6 C 1.48227 * 120.00211 * 179.97438 * 4 3 2 7 7 C 1.42070 * 126.83466 * 179.97438 * 6 4 3 8 8 C 1.36858 * 103.78499 * 180.02562 * 7 6 4 9 9 C 1.47285 * 126.84283 * 179.97438 * 8 7 6 10 10 O 1.21641 * 120.00095 * 354.26943 * 9 8 7 11 11 N 1.34772 * 119.99547 * 174.26254 * 9 8 7 12 12 C 1.36666 * 120.00316 * 4.91422 * 11 9 8 13 13 H 1.07999 * 119.99826 * 319.34896 * 12 11 9 14 14 C 1.39171 * 120.00090 * 139.35210 * 12 11 9 15 15 N 1.31289 * 120.00485 * 166.32532 * 14 12 11 16 16 Si 1.86804 * 120.00197 * 346.32573 * 14 12 11 17 17 H 1.48505 * 109.46961 * 91.65073 * 16 14 12 18 18 H 1.48498 * 109.47341 * 211.65059 * 16 14 12 19 19 H 1.48497 * 109.46974 * 331.65514 * 16 14 12 20 20 C 1.46504 * 119.99905 * 184.91044 * 11 9 8 21 21 C 1.53000 * 109.47122 * 85.01078 * 20 11 9 22 22 C 1.50701 * 109.47594 * 180.02562 * 21 20 11 23 23 O 1.20827 * 119.99144 * 0.02562 * 22 21 20 24 24 O 1.34220 * 120.00231 * 179.97438 * 22 21 20 25 25 C 1.45201 * 117.00059 * 179.97438 * 24 22 21 26 26 O 1.34649 * 106.31356 * 0.22802 * 8 7 6 27 27 N 1.20874 * 111.73772 * 359.58833 * 26 8 7 28 28 H 1.09006 * 109.46535 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47750 * 299.99772 * 1 2 3 30 30 H 1.08994 * 109.47268 * 60.00365 * 1 2 3 31 31 H 1.08997 * 109.47750 * 240.00228 * 2 1 3 32 32 H 1.09000 * 109.47049 * 119.99282 * 2 1 3 33 33 H 1.08003 * 128.10893 * 0.02562 * 7 6 4 34 34 H 0.97002 * 120.00412 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.47472 * 205.00676 * 20 11 9 36 36 H 1.09002 * 109.46854 * 325.01124 * 20 11 9 37 37 H 1.09008 * 109.46866 * 299.99914 * 21 20 11 38 38 H 1.09001 * 109.47599 * 59.99394 * 21 20 11 39 39 H 1.08994 * 109.47023 * 60.00185 * 25 24 22 40 40 H 1.08995 * 109.47364 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.47151 * 300.00698 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5456 0.0005 5 8 4.0884 0.5828 0.0015 6 6 3.9153 2.9154 0.0000 7 6 5.2915 3.2679 0.0010 8 6 5.2776 4.6364 0.0005 9 6 6.4473 5.5315 0.0016 10 8 7.5671 5.0688 0.1084 11 7 6.2767 6.8633 -0.1157 12 6 5.0165 7.3918 -0.1346 13 1 4.2304 6.8941 -0.6831 14 6 4.7461 8.5713 0.5528 15 7 3.6292 9.2226 0.3251 16 14 5.9726 9.2279 1.7995 17 1 6.9067 10.1667 1.1278 18 1 5.2459 9.9413 2.8803 19 1 6.7401 8.0976 2.3814 20 6 7.4422 7.7444 -0.2228 21 6 7.8908 7.8213 -1.6836 22 6 9.0901 8.7272 -1.7938 23 8 9.5401 9.2566 -0.8053 24 8 9.6589 8.9451 -2.9898 25 6 10.8102 9.8293 -3.0210 26 8 3.9815 5.0015 0.0045 27 7 3.2462 4.0421 -0.0009 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 6.1481 2.6101 0.0018 34 1 3.4406 10.0445 0.8045 35 1 7.1774 8.7415 0.1288 36 1 8.2545 7.3480 0.3864 37 1 8.1557 6.8241 -2.0353 38 1 7.0785 8.2175 -2.2929 39 1 11.6000 9.4197 -2.3914 40 1 11.1717 9.9193 -4.0453 41 1 10.5230 10.8130 -2.6496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001302618569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -139.208203 kcal Electronic energy + Delta-G solvation = -29374.055538 eV Core-core repulsion = 24837.557475 eV Total energy + Delta-G solvation = -4536.498063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.19012 -41.67067 -41.58479 -40.75607 -37.95907 -37.77385 -37.19410 -35.23244 -34.35553 -33.57067 -32.68409 -32.20777 -28.81483 -27.22739 -26.87589 -26.34295 -24.23702 -24.00479 -22.98564 -21.95323 -21.33356 -20.26561 -19.04689 -18.96106 -18.70604 -18.17577 -17.88420 -17.68699 -17.64865 -17.41084 -17.10531 -16.85690 -16.04495 -15.76432 -15.34624 -15.21756 -14.93029 -14.70233 -14.53807 -14.47866 -14.20603 -14.03583 -13.70943 -13.64485 -13.09429 -13.09128 -12.98445 -12.91903 -12.66484 -12.58811 -12.19496 -12.07605 -11.85876 -11.81316 -11.77220 -11.64974 -11.61752 -11.42421 -10.92680 -10.89799 -9.99145 -8.57899 -6.28520 -0.42472 -0.03955 1.08733 1.11876 1.21901 1.33074 1.39484 1.48228 1.56181 1.71123 2.01150 2.10763 2.43649 2.71342 2.89890 3.44207 3.66764 3.73772 3.81770 3.96040 3.97576 3.99720 4.02801 4.07603 4.30200 4.31579 4.33358 4.38500 4.60901 4.66048 4.70421 4.72241 4.78990 4.89289 4.98444 5.22390 5.28015 5.29303 5.91551 6.11544 6.28031 6.61392 6.64451 6.86143 7.12878 7.39829 8.53520 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002901 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.760387 B = 9651.023414 C =10817.327715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.565 3.435 5 O -0.501 6.501 6 C -0.033 4.033 7 C -0.120 4.120 8 C -0.042 4.042 9 C 0.551 3.449 10 O -0.576 6.576 11 N -0.440 5.440 12 C -0.353 4.353 13 H 0.110 0.890 14 C 0.051 3.949 15 N -0.873 5.873 16 Si 0.911 3.089 17 H -0.259 1.259 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.107 3.893 21 C -0.118 4.118 22 C 0.475 3.525 23 O -0.539 6.539 24 O -0.359 6.359 25 C 0.026 3.974 26 O 0.169 5.831 27 N -0.320 5.320 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.207 0.793 34 H 0.285 0.715 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.136 0.864 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -8.271 -4.926 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.408 3.592 5 O -0.387 6.387 6 C -0.188 4.188 7 C -0.143 4.143 8 C -0.107 4.107 9 C 0.339 3.661 10 O -0.461 6.461 11 N -0.159 5.159 12 C -0.481 4.481 13 H 0.127 0.873 14 C -0.157 4.157 15 N -0.507 5.507 16 Si 0.738 3.262 17 H -0.186 1.186 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.016 4.016 21 C -0.157 4.157 22 C 0.319 3.681 23 O -0.429 6.429 24 O -0.275 6.275 25 C -0.067 4.067 26 O 0.084 5.916 27 N -0.016 5.016 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.154 0.846 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.010 -8.283 -4.570 9.514 hybrid contribution 1.100 0.422 0.798 1.423 sum 2.110 -7.861 -3.772 8.971 Atomic orbital electron populations 1.21863 0.90198 1.04794 1.03627 1.23569 0.97271 0.77623 1.03709 1.86633 1.21573 1.35368 1.83007 1.19222 0.81529 0.85928 0.72559 1.90838 1.61027 1.40700 1.46175 1.22361 0.92129 0.92352 1.11921 1.22830 0.96503 0.92963 1.02008 1.24118 0.85369 0.94517 1.06677 1.16794 0.85325 0.82154 0.81835 1.90754 1.22922 1.76066 1.56351 1.43596 1.06705 1.04229 1.61337 1.19270 0.85717 1.09741 1.33344 0.87275 1.25758 0.97028 0.96232 0.96717 1.69647 1.25316 1.16170 1.39612 0.86402 0.79606 0.79838 0.80382 1.18562 1.20751 1.18883 1.21582 0.88919 0.94790 0.96288 1.21625 0.94411 1.00721 0.98904 1.23686 0.83968 0.79342 0.81103 1.90651 1.63735 1.49547 1.38968 1.86503 1.45209 1.63130 1.32699 1.23604 0.84920 0.92350 1.05830 1.85459 1.14344 1.28167 1.63626 1.74260 1.19519 0.95243 1.12549 0.87108 0.91599 0.91503 0.90000 0.90116 0.77554 0.90411 0.90864 0.90133 0.85857 0.85497 0.91814 0.84558 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.29 71.98 0.74 -1.27 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.35 -9.86 10.23 -55.56 -0.57 -10.42 16 4 C 0.57 17.85 7.99 70.48 0.56 18.42 16 5 O -0.50 -16.31 16.73 20.13 0.34 -15.97 16 6 C -0.03 -1.15 7.22 42.87 0.31 -0.84 16 7 C -0.12 -4.12 10.78 22.90 0.25 -3.87 16 8 C -0.04 -1.64 6.93 24.33 0.17 -1.47 16 9 C 0.55 23.39 7.59 86.62 0.66 24.05 16 10 O -0.58 -25.31 16.55 -4.16 -0.07 -25.38 16 11 N -0.44 -19.18 2.17 -639.48 -1.39 -20.57 16 12 C -0.35 -16.82 8.58 84.16 0.72 -16.10 16 13 H 0.11 5.50 6.04 -2.91 -0.02 5.48 16 14 C 0.05 2.50 5.40 85.00 0.46 2.96 16 15 N -0.87 -45.07 13.95 21.70 0.30 -44.77 16 16 Si 0.91 40.13 24.74 68.60 1.70 41.83 16 17 H -0.26 -11.17 6.64 99.48 0.66 -10.51 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.26 -11.86 7.08 99.48 0.70 -11.15 16 20 C 0.11 4.30 3.19 86.38 0.28 4.58 16 21 C -0.12 -3.90 6.10 29.85 0.18 -3.72 16 22 C 0.47 15.42 7.96 71.24 0.57 15.99 16 23 O -0.54 -20.41 15.73 21.96 0.35 -20.06 16 24 O -0.36 -9.65 10.56 -51.32 -0.54 -10.19 16 25 C 0.03 0.50 10.56 113.37 1.20 1.69 16 26 O 0.17 7.01 8.17 65.77 0.54 7.55 16 27 N -0.32 -12.42 12.09 -48.95 -0.59 -13.01 16 28 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.21 6.17 8.06 -2.91 -0.02 6.14 16 34 H 0.29 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.07 3.14 3.16 -2.39 -0.01 3.13 16 36 H 0.08 3.33 7.47 -2.39 -0.02 3.31 16 37 H 0.12 3.74 8.14 -2.38 -0.02 3.72 16 38 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 39 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 40 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 Total: -1.00 -61.71 364.96 7.64 -54.08 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.04 Total: 15.09 kcal Atomic # 6 Polarization: 35.30 SS G_CDS: 6.53 Total: 41.84 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.68 Total: -78.36 kcal Atomic # 8 Polarization: -74.52 SS G_CDS: 0.04 Total: -74.48 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.70 Total: 41.83 kcal Total: -61.71 7.64 -54.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302618569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.130 kcal (2) G-P(sol) polarization free energy of solvation -61.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds