Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47220 * 2 1 4 4 N 1.46505 * 109.46942 * 119.99876 * 2 1 3 5 5 C 1.34773 * 120.00223 * 275.00261 * 4 2 1 6 6 O 1.21283 * 119.99634 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00141 * 180.02562 * 5 4 2 8 8 C 1.50693 * 109.47020 * 179.97438 * 7 5 4 9 9 C 1.38268 * 119.97682 * 269.72020 * 8 7 5 10 10 C 1.38211 * 120.06277 * 179.77180 * 9 8 7 11 11 C 1.38327 * 120.01242 * 0.50732 * 10 9 8 12 12 Cl 1.73596 * 120.02490 * 179.72918 * 11 10 9 13 13 C 1.38543 * 119.95041 * 359.74379 * 11 10 9 14 14 F 1.35102 * 120.03565 * 180.02562 * 13 11 10 15 15 C 1.38203 * 119.97566 * 90.00101 * 8 7 5 16 16 C 1.53004 * 109.47287 * 240.00004 * 2 1 3 17 17 C 1.53950 * 113.73810 * 158.74103 * 16 2 1 18 18 N 1.47822 * 86.03268 * 222.08432 * 17 16 2 19 19 C 1.36931 * 134.45159 * 204.64244 * 18 17 16 20 20 H 1.08001 * 119.99686 * 173.34802 * 19 18 17 21 21 C 1.38811 * 120.00753 * 353.35253 * 19 18 17 22 22 N 1.31627 * 119.99448 * 5.06096 * 21 19 18 23 23 Si 1.86791 * 120.00411 * 185.06252 * 21 19 18 24 24 H 1.48505 * 109.47249 * 94.98471 * 23 21 19 25 25 H 1.48497 * 109.47259 * 214.98856 * 23 21 19 26 26 H 1.48506 * 109.46963 * 334.98840 * 23 21 19 27 27 C 1.47577 * 91.04908 * 24.55246 * 18 17 16 28 28 H 1.08996 * 109.47042 * 60.00531 * 1 2 3 29 29 H 1.09008 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47432 * 299.99763 * 1 2 3 31 31 H 0.97007 * 119.99472 * 95.00696 * 4 2 1 32 32 H 1.09000 * 109.46956 * 59.99479 * 7 5 4 33 33 H 1.09008 * 109.46614 * 299.99880 * 7 5 4 34 34 H 1.07998 * 119.96553 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.99504 * 180.23394 * 10 9 8 36 36 H 1.07993 * 120.00677 * 359.94680 * 15 8 7 37 37 H 1.08995 * 112.94309 * 290.33151 * 16 2 1 38 38 H 1.08996 * 113.77149 * 336.34791 * 17 16 2 39 39 H 1.08997 * 113.76623 * 107.74933 * 17 16 2 40 40 H 0.97001 * 119.99456 * 180.02562 * 22 21 19 41 41 H 1.09007 * 113.76862 * 221.15107 * 27 18 17 42 42 H 1.09000 * 113.87471 * 89.76996 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6498 -0.7286 3.5875 8 6 2.7009 0.2398 4.7410 9 6 3.8511 0.9688 4.9805 10 6 3.8983 1.8610 6.0351 11 6 2.7979 2.0178 6.8585 12 17 2.8593 3.1331 8.1873 13 6 1.6469 1.2838 6.6221 14 9 0.5711 1.4360 7.4249 15 6 1.6000 0.3944 5.5621 16 6 2.0400 -0.7213 -1.2493 17 6 3.4849 -0.3520 -1.6316 18 7 2.9979 -0.3176 -3.0269 19 6 3.5876 -0.4756 -4.2525 20 1 2.9792 -0.5089 -5.1442 21 6 4.9674 -0.5929 -4.3491 22 7 5.7007 -0.6526 -3.2576 23 14 5.7834 -0.6662 -6.0277 24 1 6.2266 0.6951 -6.4225 25 1 6.9589 -1.5715 -5.9676 26 1 4.8133 -1.1802 -7.0277 27 6 1.6214 -0.0471 -2.5684 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2491 -1.6318 1.1526 32 1 3.6491 -1.1204 3.3979 33 1 1.9775 -1.5509 3.8325 34 1 4.7120 0.8440 4.3405 35 1 4.7960 2.4326 6.2189 36 1 0.7033 -0.1780 5.3766 37 1 1.8529 -1.7948 -1.2263 38 1 3.8048 0.6191 -1.2539 39 1 4.2071 -1.1447 -1.4366 40 1 6.6649 -0.7343 -3.3251 41 1 0.8587 -0.5969 -3.1200 42 1 1.3909 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330053027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -15.630696 kcal Electronic energy + Delta-G solvation = -26181.110691 eV Core-core repulsion = 22103.053305 eV Total energy + Delta-G solvation = -4078.057386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.20965 -40.26727 -39.17116 -38.01958 -36.85652 -34.82499 -33.04907 -32.20044 -31.04332 -30.50196 -27.77485 -27.53870 -24.87490 -24.02131 -23.34867 -22.56645 -21.23743 -20.33843 -19.10829 -17.81070 -17.04525 -16.99708 -16.80426 -16.68120 -16.07884 -15.97973 -15.17010 -14.89518 -14.41291 -14.24416 -14.01556 -13.88347 -13.69172 -13.46580 -13.18197 -13.13708 -12.61399 -12.50476 -12.25411 -11.91167 -11.78314 -11.68552 -11.66462 -11.34945 -11.32851 -11.22529 -10.92911 -10.75825 -10.38269 -10.02847 -9.80861 -9.76400 -9.44391 -9.27498 -8.88558 -8.84814 -8.81523 -6.89091 -5.81252 -3.12164 0.61472 0.79274 1.70466 2.67842 2.96761 3.36987 3.41531 3.43041 3.44091 3.75242 4.19374 4.33502 4.42954 4.71938 4.79618 4.82462 5.00259 5.09820 5.14514 5.22974 5.26721 5.33801 5.50210 5.50322 5.61975 5.63226 5.72118 5.77069 5.90691 6.00062 6.06254 6.21591 6.32609 6.36668 6.38317 6.56013 6.63685 6.76591 7.19400 7.31819 7.53046 7.60952 7.94928 8.30124 9.01786 9.67962 10.57935 11.36558 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.002042 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.602101 B =13706.602829 C =14558.868783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.087 0.913 4 N -0.717 5.717 5 C 0.513 3.487 6 O -0.536 6.536 7 C -0.108 4.108 8 C -0.026 4.026 9 C -0.101 4.101 10 C -0.080 4.080 11 C -0.076 4.076 12 Cl -0.055 7.055 13 C 0.110 3.890 14 F -0.129 7.129 15 C -0.129 4.129 16 C -0.147 4.147 17 C 0.174 3.826 18 N -0.613 5.613 19 C -0.223 4.223 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.400 0.600 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 -0.932 21.543 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.367 5.367 5 C 0.299 3.701 6 O -0.412 6.412 7 C -0.148 4.148 8 C -0.027 4.027 9 C -0.120 4.120 10 C -0.099 4.099 11 C -0.104 4.104 12 Cl -0.026 7.026 13 C 0.089 3.911 14 F -0.107 7.107 15 C -0.148 4.148 16 C -0.167 4.167 17 C 0.049 3.951 18 N -0.339 5.339 19 C -0.351 4.351 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.003 3.997 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.234 0.766 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.106 0.894 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.963 -0.021 21.480 22.580 hybrid contribution 0.463 -0.196 -0.712 0.872 sum -6.500 -0.217 20.768 21.763 Atomic orbital electron populations 1.22127 0.95730 1.01693 1.02100 1.21094 0.93419 0.97588 0.83300 0.89486 1.46090 1.66913 1.14127 1.09615 1.20307 0.78084 0.87428 0.84308 1.90740 1.49786 1.15769 1.84943 1.20761 1.05038 0.97822 0.91206 1.19235 0.92890 0.96266 0.94328 1.21101 0.98563 0.95343 0.96970 1.20947 0.97111 0.98109 0.93685 1.20989 0.95870 0.98207 0.95335 1.98383 1.98540 1.60523 1.45197 1.17307 0.83377 0.98488 0.91886 1.91536 1.52952 1.94548 1.71678 1.20941 1.00058 0.99436 0.94343 1.23837 1.00937 0.99617 0.92329 1.22226 0.91162 0.98386 0.83328 1.45991 1.03533 1.82414 1.01992 1.19030 0.89850 1.42806 0.83416 0.90234 1.24822 0.95924 1.02418 0.97277 1.69835 1.04834 1.56027 1.25978 0.86136 0.79097 0.77467 0.83313 1.21615 1.21705 1.20547 1.22496 0.89731 0.96622 0.90877 0.91450 0.92758 0.92828 0.76580 0.86965 0.87450 0.84129 0.83832 0.83929 0.89421 0.95489 0.91487 0.93667 0.93814 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.31 37.16 0.35 -1.64 16 2 C 0.15 2.16 2.38 -67.93 -0.16 2.00 16 3 H 0.09 1.49 7.42 -51.93 -0.39 1.10 16 4 N -0.72 -8.36 5.08 -53.80 -0.27 -8.64 16 5 C 0.51 6.20 7.79 -10.99 -0.09 6.12 16 6 O -0.54 -8.75 15.70 5.55 0.09 -8.66 16 7 C -0.11 -0.85 5.83 -29.04 -0.17 -1.02 16 8 C -0.03 -0.25 4.37 -104.63 -0.46 -0.71 16 9 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 10 C -0.08 -0.73 9.83 -39.56 -0.39 -1.12 16 11 C -0.08 -0.80 6.33 -39.44 -0.25 -1.05 16 12 Cl -0.06 -0.55 28.62 -51.86 -1.48 -2.04 16 13 C 0.11 1.19 7.28 -39.39 -0.29 0.90 16 14 F -0.13 -1.48 16.84 2.25 0.04 -1.45 16 15 C -0.13 -1.26 9.68 -39.52 -0.38 -1.64 16 16 C -0.15 -2.48 3.47 -89.69 -0.31 -2.79 16 17 C 0.17 3.91 6.99 -2.83 -0.02 3.89 16 18 N -0.61 -15.41 3.70 -177.69 -0.66 -16.07 16 19 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -26.89 11.51 55.49 0.64 -26.25 16 23 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C 0.13 2.52 7.64 -2.97 -0.02 2.50 16 28 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 29 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 32 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.11 0.56 8.09 -51.92 -0.42 0.14 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 39 H 0.07 1.64 7.37 -51.93 -0.38 1.26 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -33.63 375.14 -9.54 -43.17 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.69 Total: -0.06 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.83 Total: -2.55 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.29 Total: -50.96 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.63 -9.54 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330053027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.540 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds