Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47220 * 2 1 4 4 N 1.46505 * 109.46942 * 119.99876 * 2 1 3 5 5 C 1.34773 * 120.00223 * 275.00261 * 4 2 1 6 6 O 1.21283 * 119.99634 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00141 * 180.02562 * 5 4 2 8 8 C 1.50693 * 109.47020 * 179.97438 * 7 5 4 9 9 C 1.38268 * 119.97682 * 269.72020 * 8 7 5 10 10 C 1.38211 * 120.06277 * 179.77180 * 9 8 7 11 11 C 1.38327 * 120.01242 * 0.50732 * 10 9 8 12 12 Cl 1.73596 * 120.02490 * 179.72918 * 11 10 9 13 13 C 1.38543 * 119.95041 * 359.74379 * 11 10 9 14 14 F 1.35102 * 120.03565 * 180.02562 * 13 11 10 15 15 C 1.38203 * 119.97566 * 90.00101 * 8 7 5 16 16 C 1.53004 * 109.47287 * 240.00004 * 2 1 3 17 17 C 1.53950 * 113.73810 * 158.74103 * 16 2 1 18 18 N 1.47822 * 86.03268 * 222.08432 * 17 16 2 19 19 C 1.36931 * 134.45159 * 204.64244 * 18 17 16 20 20 H 1.08001 * 119.99686 * 173.34802 * 19 18 17 21 21 C 1.38811 * 120.00753 * 353.35253 * 19 18 17 22 22 N 1.31627 * 119.99448 * 5.06096 * 21 19 18 23 23 Si 1.86791 * 120.00411 * 185.06252 * 21 19 18 24 24 H 1.48505 * 109.47249 * 94.98471 * 23 21 19 25 25 H 1.48497 * 109.47259 * 214.98856 * 23 21 19 26 26 H 1.48506 * 109.46963 * 334.98840 * 23 21 19 27 27 C 1.47577 * 91.04908 * 24.55246 * 18 17 16 28 28 H 1.08996 * 109.47042 * 60.00531 * 1 2 3 29 29 H 1.09008 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47432 * 299.99763 * 1 2 3 31 31 H 0.97007 * 119.99472 * 95.00696 * 4 2 1 32 32 H 1.09000 * 109.46956 * 59.99479 * 7 5 4 33 33 H 1.09008 * 109.46614 * 299.99880 * 7 5 4 34 34 H 1.07998 * 119.96553 * 0.02562 * 9 8 7 35 35 H 1.07994 * 119.99504 * 180.23394 * 10 9 8 36 36 H 1.07993 * 120.00677 * 359.94680 * 15 8 7 37 37 H 1.08995 * 112.94309 * 290.33151 * 16 2 1 38 38 H 1.08996 * 113.77149 * 336.34791 * 17 16 2 39 39 H 1.08997 * 113.76623 * 107.74933 * 17 16 2 40 40 H 0.97001 * 119.99456 * 180.02562 * 22 21 19 41 41 H 1.09007 * 113.76862 * 221.15107 * 27 18 17 42 42 H 1.09000 * 113.87471 * 89.76996 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6498 -0.7286 3.5875 8 6 2.7009 0.2398 4.7410 9 6 3.8511 0.9688 4.9805 10 6 3.8983 1.8610 6.0351 11 6 2.7979 2.0178 6.8585 12 17 2.8593 3.1331 8.1873 13 6 1.6469 1.2838 6.6221 14 9 0.5711 1.4360 7.4249 15 6 1.6000 0.3944 5.5621 16 6 2.0400 -0.7213 -1.2493 17 6 3.4849 -0.3520 -1.6316 18 7 2.9979 -0.3176 -3.0269 19 6 3.5876 -0.4756 -4.2525 20 1 2.9792 -0.5089 -5.1442 21 6 4.9674 -0.5929 -4.3491 22 7 5.7007 -0.6526 -3.2576 23 14 5.7834 -0.6662 -6.0277 24 1 6.2266 0.6951 -6.4225 25 1 6.9589 -1.5715 -5.9676 26 1 4.8133 -1.1802 -7.0277 27 6 1.6214 -0.0471 -2.5684 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2491 -1.6318 1.1526 32 1 3.6491 -1.1204 3.3979 33 1 1.9775 -1.5509 3.8325 34 1 4.7120 0.8440 4.3405 35 1 4.7960 2.4326 6.2189 36 1 0.7033 -0.1780 5.3766 37 1 1.8529 -1.7948 -1.2263 38 1 3.8048 0.6191 -1.2539 39 1 4.2071 -1.1447 -1.4366 40 1 6.6649 -0.7343 -3.3251 41 1 0.8587 -0.5969 -3.1200 42 1 1.3909 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330053027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -35.861650 kcal Electronic energy + Delta-G solvation = -26181.987971 eV Core-core repulsion = 22103.053305 eV Total energy + Delta-G solvation = -4078.934666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03315 -41.20400 -40.19769 -39.37049 -37.63282 -36.10051 -34.18856 -33.74168 -31.85371 -31.60615 -29.36078 -28.51487 -26.53303 -25.60180 -24.08839 -23.62020 -22.48242 -21.37844 -20.55383 -18.76661 -18.58297 -17.91698 -17.79538 -17.51998 -17.19700 -16.88989 -16.80362 -16.05874 -15.74763 -15.40038 -15.11840 -14.82955 -14.70576 -14.62957 -14.39765 -14.05121 -13.93816 -13.49782 -13.30611 -13.22703 -13.07612 -12.88957 -12.69065 -12.65150 -12.54891 -12.45341 -12.36762 -11.97388 -11.96065 -11.71130 -11.46555 -11.22362 -10.87072 -10.80293 -10.00586 -9.94001 -9.64516 -8.89547 -7.91889 -5.23649 -0.13098 0.07470 0.94409 1.45448 1.47552 1.56027 1.76101 2.14797 2.47609 2.57994 3.01020 3.29114 3.41460 3.50286 3.66329 3.75585 3.97901 4.04207 4.09917 4.15794 4.34497 4.43930 4.50735 4.55612 4.63112 4.72727 4.77159 4.81777 4.87605 4.90660 4.93454 5.02704 5.04705 5.16077 5.27360 5.36496 5.37686 5.53206 5.61128 5.67238 5.71858 5.94947 6.70333 6.93058 7.39593 7.61298 8.58076 9.25757 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.002042 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.602101 B =13706.602829 C =14558.868783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.055 0.945 4 N -0.710 5.710 5 C 0.512 3.488 6 O -0.583 6.583 7 C -0.099 4.099 8 C -0.035 4.035 9 C -0.106 4.106 10 C -0.083 4.083 11 C -0.089 4.089 12 Cl -0.058 7.058 13 C 0.089 3.911 14 F -0.138 7.138 15 C -0.131 4.131 16 C -0.107 4.107 17 C 0.172 3.828 18 N -0.646 5.646 19 C -0.235 4.235 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.975 3.025 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.266 1.266 27 C 0.127 3.873 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.416 0.584 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.108 0.892 38 H 0.003 0.997 39 H 0.041 0.959 40 H 0.248 0.752 41 H 0.063 0.937 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 -2.417 21.440 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.074 0.926 4 N -0.362 5.362 5 C 0.299 3.701 6 O -0.463 6.463 7 C -0.138 4.138 8 C -0.035 4.035 9 C -0.125 4.125 10 C -0.102 4.102 11 C -0.116 4.116 12 Cl -0.029 7.029 13 C 0.069 3.931 14 F -0.116 7.116 15 C -0.150 4.150 16 C -0.127 4.127 17 C 0.047 3.953 18 N -0.373 5.373 19 C -0.364 4.364 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.804 3.196 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.190 1.190 27 C 0.002 3.998 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.253 0.747 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.126 0.874 38 H 0.021 0.979 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.849 -1.536 21.385 22.832 hybrid contribution 0.707 0.308 -0.680 1.028 sum -7.142 -1.229 20.705 21.937 Atomic orbital electron populations 1.22038 0.93663 1.03080 1.01974 1.20748 0.94789 0.95720 0.83267 0.92641 1.45970 1.66650 1.14803 1.08791 1.21007 0.76944 0.86929 0.85188 1.90730 1.51825 1.17989 1.85708 1.20814 1.07087 0.97717 0.88166 1.19473 0.92768 0.96612 0.94674 1.21406 0.99191 0.94932 0.96927 1.21197 0.97365 0.98210 0.93397 1.21178 0.96313 0.98428 0.95691 1.98375 1.98555 1.60619 1.45372 1.17569 0.83445 0.99530 0.92599 1.91505 1.53374 1.94723 1.72035 1.21172 1.00816 0.99154 0.93863 1.23443 0.96074 1.00632 0.92531 1.22114 0.93916 0.96359 0.82902 1.46444 1.06119 1.82675 1.02052 1.19433 0.90381 1.41670 0.84873 0.89890 1.25644 0.96659 1.03052 1.00719 1.70008 1.04557 1.57599 1.27848 0.85106 0.78015 0.77000 0.79528 1.21878 1.21924 1.19021 1.22694 0.87713 0.97386 0.92045 0.91345 0.90536 0.93267 0.74749 0.84475 0.83986 0.82627 0.82146 0.82403 0.87383 0.97949 0.94058 0.94271 0.91875 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.31 71.98 0.67 -2.69 16 2 C 0.16 4.35 2.38 44.99 0.11 4.46 16 3 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 4 N -0.71 -14.97 5.08 -442.52 -2.25 -17.22 16 5 C 0.51 11.36 7.79 87.66 0.68 12.04 16 6 O -0.58 -18.63 15.70 -3.04 -0.05 -18.68 16 7 C -0.10 -1.24 5.83 29.10 0.17 -1.07 16 8 C -0.03 -0.58 4.37 -19.87 -0.09 -0.67 16 9 C -0.11 -1.77 9.70 22.27 0.22 -1.56 16 10 C -0.08 -1.44 9.83 22.28 0.22 -1.22 16 11 C -0.09 -1.81 6.33 22.36 0.14 -1.67 16 12 Cl -0.06 -1.15 28.62 -2.72 -0.08 -1.23 16 13 C 0.09 1.89 7.28 22.39 0.16 2.05 16 14 F -0.14 -3.18 16.84 44.97 0.76 -2.42 16 15 C -0.13 -2.38 9.68 22.31 0.22 -2.16 16 16 C -0.11 -3.44 3.47 -10.13 -0.04 -3.47 16 17 C 0.17 7.82 6.99 86.44 0.60 8.43 16 18 N -0.65 -32.47 3.70 -716.08 -2.65 -35.12 16 19 C -0.24 -13.07 10.70 84.03 0.90 -12.18 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 22 N -0.95 -56.73 11.51 21.65 0.25 -56.48 16 23 Si 0.98 45.29 29.56 68.60 2.03 47.32 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C 0.13 4.77 7.64 86.49 0.66 5.43 16 28 H 0.07 1.53 7.52 -2.39 -0.02 1.51 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.42 6.26 8.60 -92.70 -0.80 5.46 16 32 H 0.14 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.14 0.84 8.09 -2.38 -0.02 0.82 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.00 0.13 7.99 -2.39 -0.02 0.11 16 39 H 0.04 2.06 7.37 -2.39 -0.02 2.05 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -74.99 375.14 3.36 -71.64 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.25 Total: 9.83 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.09 Total: 2.36 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.65 Total: -108.81 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.76 Total: -2.42 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -74.99 3.36 -71.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330053027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.774 kcal (2) G-P(sol) polarization free energy of solvation -74.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds