Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47284 * 2 1 4 4 N 1.46500 * 109.46880 * 239.99934 * 2 1 3 5 5 C 1.34769 * 120.00200 * 85.00184 * 4 2 1 6 6 O 1.21283 * 119.99929 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00479 * 180.02562 * 5 4 2 8 8 C 1.50698 * 109.47434 * 180.02562 * 7 5 4 9 9 C 1.38234 * 120.00763 * 100.00094 * 8 7 5 10 10 C 1.38222 * 120.04838 * 179.97438 * 9 8 7 11 11 C 1.38261 * 120.06440 * 359.97438 * 10 9 8 12 12 C 1.38275 * 120.00861 * 0.02990 * 11 10 9 13 13 Cl 1.73603 * 120.02653 * 179.97438 * 12 11 10 14 14 C 1.38401 * 120.00547 * 279.72220 * 8 7 5 15 15 F 1.35102 * 120.02845 * 359.97438 * 14 8 7 16 16 C 1.53008 * 109.46911 * 120.00316 * 2 1 3 17 17 C 1.53497 * 114.20384 * 299.99367 * 16 2 1 18 18 N 1.47070 * 87.98301 * 87.52522 * 17 16 2 19 19 C 1.36932 * 136.05620 * 207.08686 * 18 17 16 20 20 H 1.08001 * 120.00168 * 7.92391 * 19 18 17 21 21 C 1.38807 * 120.00154 * 187.92753 * 19 18 17 22 22 N 1.31620 * 120.00181 * 195.15567 * 21 19 18 23 23 Si 1.86800 * 119.99868 * 15.15620 * 21 19 18 24 24 H 1.48503 * 109.47270 * 270.00075 * 23 21 19 25 25 H 1.48502 * 109.47339 * 30.00381 * 23 21 19 26 26 H 1.48506 * 109.47014 * 149.99865 * 23 21 19 27 27 C 1.47068 * 87.88415 * 27.33811 * 18 17 16 28 28 H 1.09006 * 109.46761 * 299.99985 * 1 2 3 29 29 H 1.08995 * 109.46842 * 59.99566 * 1 2 3 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99931 * 265.00113 * 4 2 1 32 32 H 1.09005 * 109.47323 * 299.99824 * 7 5 4 33 33 H 1.09000 * 109.46903 * 59.99764 * 7 5 4 34 34 H 1.07996 * 119.97609 * 359.95067 * 9 8 7 35 35 H 1.08007 * 119.97005 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.99357 * 179.97438 * 11 10 9 37 37 H 1.09008 * 113.41028 * 166.80073 * 16 2 1 38 38 H 1.08996 * 113.46841 * 332.74047 * 17 16 2 39 39 H 1.08998 * 113.51535 * 202.31022 * 17 16 2 40 40 H 0.97002 * 120.00096 * 354.91189 * 22 21 19 41 41 H 1.09005 * 113.46482 * 87.44223 * 27 18 17 42 42 H 1.09000 * 113.46807 * 217.87726 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0184 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6487 -0.7289 -3.5877 8 6 2.7002 0.2396 -4.7411 9 6 3.9021 0.8165 -5.1064 10 6 3.9504 1.7045 -6.1645 11 6 2.7968 2.0169 -6.8597 12 6 1.5931 1.4414 -6.4964 13 17 0.1443 1.8339 -7.3686 14 6 1.5450 0.5473 -5.4386 15 9 0.3709 -0.0207 -5.0862 16 6 2.0400 -0.7214 1.2493 17 6 1.5899 -0.0846 2.5714 18 7 0.3745 -0.9091 2.4946 19 6 -0.9129 -0.8126 2.9512 20 1 -1.2551 0.1019 3.4126 21 6 -1.7781 -1.8901 2.8209 22 7 -3.0736 -1.7165 2.9761 23 14 -1.1040 -3.5868 2.4255 24 1 -1.0532 -3.7683 0.9525 25 1 0.2639 -3.7194 2.9881 26 1 -1.9868 -4.6215 3.0217 27 6 1.1519 -1.8859 1.7172 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6318 -1.1526 32 1 3.6479 -1.1215 -3.3987 33 1 1.9758 -1.5506 -3.8325 34 1 4.8041 0.5735 -4.5644 35 1 4.8902 2.1542 -6.4491 36 1 2.8357 2.7112 -7.6860 37 1 3.1026 -0.9610 1.2076 38 1 1.3946 0.9849 2.4938 39 1 2.2319 -0.3356 3.4158 40 1 -3.4174 -0.8529 3.2536 41 1 1.6789 -2.6124 2.3358 42 1 0.5834 -2.3510 0.9118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330055975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = 3.471647 kcal Electronic energy + Delta-G solvation = -27186.952594 eV Core-core repulsion = 23109.723548 eV Total energy + Delta-G solvation = -4077.229046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11621 -40.24861 -39.45216 -38.52841 -36.82049 -34.60463 -33.22975 -32.37450 -30.74121 -30.15022 -28.04724 -27.65615 -25.37161 -24.01940 -23.16256 -22.58166 -21.13602 -20.20932 -18.96512 -17.96427 -17.45982 -17.12373 -17.00505 -16.53232 -15.81684 -15.79992 -15.27330 -14.88011 -14.84258 -14.79931 -13.92294 -13.71706 -13.62136 -13.58602 -13.28344 -13.19792 -12.90807 -12.38398 -12.12523 -11.75945 -11.75212 -11.72158 -11.70225 -11.30721 -11.19207 -11.17809 -10.75116 -10.53030 -10.30673 -10.10385 -9.84538 -9.42957 -9.16677 -9.13839 -8.96518 -8.82397 -8.63291 -7.12435 -6.28552 -3.20737 0.65462 0.72482 1.72947 2.70344 2.98387 3.37950 3.40011 3.45631 3.60430 3.81807 4.11811 4.39721 4.58818 4.66419 4.73360 4.75971 4.83526 4.93731 5.01618 5.10293 5.18476 5.33236 5.44516 5.52817 5.62717 5.68458 5.76771 5.88409 5.92603 6.03897 6.20881 6.23352 6.31610 6.34522 6.38047 6.47733 6.61305 6.80169 6.96312 7.13909 7.32837 7.63996 8.25619 8.32658 8.98854 9.52295 10.38978 11.21090 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.002737 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.739071 B =10229.260696 C =10967.092690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.172 3.828 3 H 0.082 0.918 4 N -0.721 5.721 5 C 0.514 3.486 6 O -0.534 6.534 7 C -0.105 4.105 8 C -0.086 4.086 9 C -0.077 4.077 10 C -0.119 4.119 11 C -0.085 4.085 12 C -0.074 4.074 13 Cl -0.051 7.051 14 C 0.129 3.871 15 F -0.121 7.121 16 C -0.144 4.144 17 C 0.127 3.873 18 N -0.619 5.619 19 C -0.300 4.300 20 H 0.081 0.919 21 C -0.022 4.022 22 N -0.932 5.932 23 Si 1.060 2.940 24 H -0.294 1.294 25 H -0.282 1.282 26 H -0.297 1.297 27 C 0.104 3.896 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.398 0.602 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.543 3.062 -20.261 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.069 3.931 3 H 0.100 0.900 4 N -0.371 5.371 5 C 0.299 3.701 6 O -0.411 6.411 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.095 4.095 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.102 4.102 13 Cl -0.022 7.022 14 C 0.109 3.891 15 F -0.099 7.099 16 C -0.164 4.164 17 C 0.000 4.000 18 N -0.347 5.347 19 C -0.427 4.427 20 H 0.099 0.901 21 C -0.222 4.222 22 N -0.574 5.574 23 Si 0.892 3.108 24 H -0.222 1.222 25 H -0.209 1.209 26 H -0.224 1.224 27 C -0.022 4.022 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.232 0.768 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.425 2.406 -20.566 27.062 hybrid contribution 0.167 0.911 0.574 1.090 sum 17.592 3.317 -19.992 26.836 Atomic orbital electron populations 1.22153 0.93062 1.03153 1.02023 1.20620 0.95559 0.95610 0.81298 0.89952 1.46140 1.67028 1.13973 1.09978 1.20251 0.78146 0.87463 0.84205 1.90731 1.49640 1.15950 1.84744 1.20650 1.04856 0.97931 0.91090 1.19321 0.92182 1.00304 0.96934 1.21018 0.96872 0.95273 0.96314 1.21117 0.98312 0.98381 0.95899 1.20968 0.90071 0.99080 1.00297 1.20969 0.90191 1.01713 0.97284 1.98393 1.35984 1.93039 1.74828 1.17215 0.82009 0.95147 0.94764 1.91564 1.44798 1.82525 1.91019 1.23236 0.98232 0.99664 0.95309 1.22320 0.88577 0.96350 0.92767 1.46295 1.05052 1.20686 1.62666 1.20067 0.83123 1.00428 1.39056 0.90118 1.25695 0.94206 1.02259 1.00017 1.70890 1.10932 1.27330 1.48291 0.83811 0.74639 0.76372 0.75984 1.22215 1.20889 1.22439 1.22766 0.92046 0.92954 0.94441 0.89034 0.94648 0.92211 0.76843 0.87073 0.87345 0.84371 0.84302 0.84059 0.90495 0.93492 0.94435 0.92823 0.93877 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.06 37.16 0.30 -2.65 16 2 C 0.17 2.82 2.76 -67.92 -0.19 2.63 16 3 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 4 N -0.72 -9.54 5.08 -53.80 -0.27 -9.82 16 5 C 0.51 7.06 7.78 -10.99 -0.09 6.98 16 6 O -0.53 -9.60 15.62 5.56 0.09 -9.51 16 7 C -0.11 -1.00 5.56 -29.04 -0.16 -1.16 16 8 C -0.09 -0.91 4.43 -104.56 -0.46 -1.37 16 9 C -0.08 -0.62 9.67 -39.59 -0.38 -1.00 16 10 C -0.12 -0.85 10.04 -39.58 -0.40 -1.24 16 11 C -0.09 -0.72 9.83 -39.56 -0.39 -1.11 16 12 C -0.07 -0.83 6.33 -39.44 -0.25 -1.08 16 13 Cl -0.05 -0.58 28.62 -51.86 -1.48 -2.06 16 14 C 0.13 1.62 7.11 -39.39 -0.28 1.34 16 15 F -0.12 -1.77 16.23 2.25 0.04 -1.73 16 16 C -0.14 -2.29 4.25 -89.97 -0.38 -2.67 16 17 C 0.13 2.36 7.86 -8.50 -0.07 2.29 16 18 N -0.62 -14.29 2.02 -184.60 -0.37 -14.66 16 19 C -0.30 -8.31 9.87 -15.06 -0.15 -8.46 16 20 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 21 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 22 N -0.93 -29.16 13.70 55.49 0.76 -28.40 16 23 Si 1.06 26.07 25.51 -169.99 -4.34 21.73 16 24 H -0.29 -6.92 6.97 56.52 0.39 -6.52 16 25 H -0.28 -6.39 5.66 56.52 0.32 -6.07 16 26 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 27 C 0.10 2.01 4.60 -8.37 -0.04 1.98 16 28 H 0.09 2.09 5.93 -51.93 -0.31 1.78 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 31 H 0.40 4.14 8.60 -40.82 -0.35 3.79 16 32 H 0.11 0.64 8.00 -51.93 -0.42 0.23 16 33 H 0.11 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.14 0.75 8.04 -52.49 -0.42 0.32 16 35 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 41 H 0.04 0.83 7.02 -51.93 -0.36 0.46 16 42 H 0.05 1.07 4.82 -51.93 -0.25 0.82 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -34.55 359.83 -8.63 -43.18 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.44 Total: 2.10 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.03 Total: -6.26 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.11 Total: -52.87 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -4.34 Total: 21.73 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.55 -8.63 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330055975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.655 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds