Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00424 * 2 1 4 4 O 1.21571 * 120.00224 * 184.46263 * 3 2 1 5 5 C 1.47649 * 119.99418 * 4.45496 * 3 2 1 6 6 C 1.39700 * 120.13080 * 310.16434 * 5 3 2 7 7 C 1.37782 * 119.89293 * 180.25510 * 6 5 3 8 8 C 1.38719 * 120.15412 * 0.04786 * 7 6 5 9 9 F 1.35098 * 119.86767 * 179.97438 * 8 7 6 10 10 C 1.38569 * 120.26381 * 359.96052 * 8 7 6 11 11 C 1.38026 * 120.10425 * 0.02562 * 10 8 7 12 12 Cl 1.73607 * 120.07843 * 179.97438 * 11 10 8 13 13 C 1.46498 * 119.99916 * 179.97438 * 2 1 3 14 14 H 1.09004 * 109.47404 * 180.02562 * 13 2 1 15 15 C 1.53004 * 109.46984 * 60.00268 * 13 2 1 16 16 N 1.46499 * 109.47144 * 55.00362 * 15 13 2 17 17 C 1.36938 * 119.99969 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99475 * 179.97438 * 17 16 15 20 20 N 1.31611 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99367 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47273 * 90.00382 * 21 19 17 23 23 H 1.48505 * 109.46862 * 210.00032 * 21 19 17 24 24 H 1.48501 * 109.47391 * 329.99866 * 21 19 17 25 25 C 1.53006 * 109.47294 * 300.00504 * 13 2 1 26 26 C 1.52999 * 117.49608 * 248.74567 * 25 13 2 27 27 C 1.52998 * 117.49705 * 180.08747 * 25 13 2 28 28 H 1.09001 * 109.46622 * 92.93460 * 1 2 3 29 29 H 1.08998 * 109.47146 * 212.92708 * 1 2 3 30 30 H 1.08995 * 109.46925 * 332.93129 * 1 2 3 31 31 H 1.07994 * 120.05480 * 0.26533 * 6 5 3 32 32 H 1.07991 * 119.92497 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.94484 * 180.02562 * 10 8 7 34 34 H 1.09006 * 109.46911 * 175.00166 * 15 13 2 35 35 H 1.08997 * 109.47454 * 294.99720 * 15 13 2 36 36 H 0.97003 * 119.99882 * 359.97438 * 16 15 13 37 37 H 0.97003 * 120.00060 * 179.97438 * 20 19 17 38 38 H 1.08996 * 115.54827 * 34.41820 * 25 13 2 39 39 H 1.09001 * 117.50243 * 359.97438 * 26 25 13 40 40 H 1.09006 * 117.49621 * 145.02226 * 26 25 13 41 41 H 1.09008 * 117.49770 * 214.97683 * 27 25 13 42 42 H 1.09000 * 117.50295 * 359.97102 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3519 1.1687 -0.0819 5 6 1.4041 2.4439 0.0993 6 6 0.3190 2.6959 -0.7438 7 6 -0.3600 3.8911 -0.6505 8 6 0.0319 4.8446 0.2777 9 9 -0.6377 6.0148 0.3639 10 6 1.1073 4.6014 1.1171 11 6 1.7951 3.4077 1.0330 12 17 3.1428 3.1040 2.0845 13 6 2.1975 -1.2687 0.0006 14 1 3.2692 -1.0696 0.0009 15 6 1.8279 -2.0715 -1.2484 16 7 2.0708 -1.2574 -2.4419 17 6 1.8105 -1.7697 -3.6848 18 1 1.4265 -2.7740 -3.7853 19 6 2.0402 -0.9980 -4.8155 20 7 2.5086 0.2258 -4.6931 21 14 1.6843 -1.6967 -6.5111 22 1 0.2819 -1.3881 -6.8893 23 1 2.6092 -1.0885 -7.5011 24 1 1.8792 -3.1687 -6.4908 25 6 1.8278 -2.0706 1.2501 26 6 2.9087 -2.2536 2.3174 27 6 2.4943 -3.4350 1.4367 28 1 -0.3632 -0.0526 -1.0264 29 1 -0.3633 -0.8626 0.5586 30 1 -0.3633 0.9151 0.4676 31 1 0.0129 1.9550 -1.4674 32 1 -1.1991 4.0863 -1.3017 33 1 1.4078 5.3472 1.8381 34 1 2.4377 -2.9739 -1.2939 35 1 0.7742 -2.3470 -1.2047 36 1 2.4154 -0.3551 -2.3516 37 1 2.6695 0.7649 -5.4833 38 1 0.7978 -1.9629 1.5901 39 1 3.8832 -1.8031 2.1293 40 1 2.5897 -2.2667 3.3597 41 1 1.9029 -4.2250 1.8999 42 1 3.1959 -3.7617 0.6691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331355335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -8.600532 kcal Electronic energy + Delta-G solvation = -27778.423728 eV Core-core repulsion = 23700.671193 eV Total energy + Delta-G solvation = -4077.752535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.18823 -40.40118 -38.70643 -37.29898 -36.54510 -35.16494 -34.05345 -31.67351 -31.11200 -30.58947 -28.15047 -26.63307 -24.46547 -23.53906 -23.21104 -22.41560 -21.56197 -20.51468 -19.13404 -17.98551 -17.42195 -17.14766 -16.78039 -16.42751 -15.87947 -15.22643 -14.94019 -14.88081 -14.71076 -14.17223 -14.05035 -13.81621 -13.58919 -13.40542 -13.02630 -12.96288 -12.83783 -12.57885 -12.36718 -11.95450 -11.57613 -11.48956 -11.44204 -11.30160 -11.08273 -11.05841 -10.83135 -10.73010 -10.33327 -10.14105 -9.82657 -9.66428 -9.57819 -9.18848 -8.87331 -8.84393 -8.27362 -6.90331 -5.73433 -3.03110 0.56622 0.84586 1.90553 2.80618 3.10358 3.38689 3.42903 3.48667 3.50686 3.91929 3.96673 4.45681 4.52151 4.58614 4.68753 4.80250 4.97843 5.02998 5.07873 5.20034 5.28765 5.38314 5.52943 5.58393 5.63349 5.66049 5.72799 5.79521 5.84661 5.91014 5.95175 5.99414 6.04535 6.22213 6.24187 6.31068 6.42699 6.47986 6.72652 6.95444 7.63127 7.70562 8.42999 8.44191 9.55568 10.13786 10.49387 11.48384 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.004570 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.667591 B = 6125.751255 C = 8243.361170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.586 5.586 3 C 0.563 3.437 4 O -0.511 6.511 5 C -0.119 4.119 6 C -0.040 4.040 7 C -0.154 4.154 8 C 0.126 3.874 9 F -0.132 7.132 10 C -0.157 4.157 11 C 0.031 3.969 12 Cl -0.036 7.036 13 C 0.164 3.836 14 H 0.102 0.898 15 C 0.149 3.851 16 N -0.728 5.728 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.928 5.928 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.169 4.169 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.029 0.971 35 H 0.022 0.978 36 H 0.386 0.614 37 H 0.254 0.746 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 4.593 16.476 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.318 5.318 3 C 0.350 3.650 4 O -0.386 6.386 5 C -0.123 4.123 6 C -0.059 4.059 7 C -0.172 4.172 8 C 0.106 3.894 9 F -0.110 7.110 10 C -0.177 4.177 11 C 0.003 3.997 12 Cl -0.007 7.007 13 C 0.061 3.939 14 H 0.120 0.880 15 C 0.020 3.980 16 N -0.373 5.373 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.207 4.207 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.221 0.779 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.164 4.489 16.388 18.076 hybrid contribution -0.242 0.198 -0.958 1.008 sum -6.406 4.688 15.430 17.352 Atomic orbital electron populations 1.21955 0.79967 1.02348 1.02772 1.47427 1.06759 1.05198 1.72418 1.17844 0.87095 0.83000 0.77079 1.90835 1.13006 1.86500 1.48279 1.19937 0.98025 0.96022 0.98362 1.21425 0.91411 0.96781 0.96240 1.21211 1.02871 0.93480 0.99677 1.17631 0.92182 0.82496 0.97052 1.91530 1.78895 1.45210 1.95384 1.20847 0.96729 0.97665 1.02441 1.20560 0.91374 0.93813 0.93984 1.98415 1.42914 1.95661 1.63690 1.20945 0.97844 0.81918 0.93204 0.87991 1.20925 0.97817 0.93469 0.85770 1.42314 1.78837 1.15839 1.00327 1.19189 1.36267 0.98025 0.83653 0.91304 1.24730 1.02050 0.96342 0.97665 1.69683 1.50871 1.08746 1.28348 0.86236 0.77436 0.78070 0.84697 1.21828 1.21831 1.20819 1.22539 0.98062 0.99479 0.97829 1.23014 0.99714 1.02882 0.95899 1.22928 1.03736 0.91093 1.02938 0.91248 0.91181 0.91365 0.82529 0.83409 0.83295 0.95317 0.96040 0.77926 0.93558 0.87648 0.88674 0.89185 0.88847 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 8.26 59.85 0.49 1.42 16 2 N -0.59 -9.43 2.24 -175.12 -0.39 -9.82 16 3 C 0.56 10.09 6.43 -12.42 -0.08 10.01 16 4 O -0.51 -10.99 15.22 5.30 0.08 -10.91 16 5 C -0.12 -1.80 4.87 -104.94 -0.51 -2.31 16 6 C -0.04 -0.53 7.64 -39.20 -0.30 -0.83 16 7 C -0.15 -1.71 10.01 -39.57 -0.40 -2.10 16 8 C 0.13 1.42 7.31 -39.28 -0.29 1.14 16 9 F -0.13 -1.46 17.26 2.25 0.04 -1.43 16 10 C -0.16 -1.80 9.79 -39.54 -0.39 -2.19 16 11 C 0.03 0.42 6.34 -39.09 -0.25 0.17 16 12 Cl -0.04 -0.51 27.19 -51.86 -1.41 -1.92 16 13 C 0.16 2.75 2.42 -67.93 -0.16 2.58 16 14 H 0.10 1.98 6.66 -51.93 -0.35 1.64 16 15 C 0.15 2.92 5.32 -4.04 -0.02 2.90 16 16 N -0.73 -18.28 5.43 -59.91 -0.33 -18.61 16 17 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 21 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.16 -2.07 5.16 -90.62 -0.47 -2.54 16 26 C -0.18 -2.12 10.18 -26.69 -0.27 -2.39 16 27 C -0.17 -1.98 9.80 -26.69 -0.26 -2.24 16 28 H 0.07 0.98 7.57 -51.93 -0.39 0.58 16 29 H 0.07 0.76 6.40 -51.93 -0.33 0.42 16 30 H 0.07 0.73 5.71 -51.93 -0.30 0.43 16 31 H 0.16 2.12 6.63 -52.49 -0.35 1.77 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.03 0.58 7.48 -51.93 -0.39 0.19 16 35 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 36 H 0.39 10.56 7.06 -40.82 -0.29 10.27 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.11 1.23 6.55 -51.93 -0.34 0.89 16 39 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 42 H 0.10 1.24 7.67 -51.93 -0.40 0.84 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -32.45 366.46 -9.13 -41.58 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.19 Total: 9.33 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.15 Total: -3.59 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.01 Total: -55.84 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.41 Total: -1.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.45 -9.13 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331355335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.975 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds