Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00424 * 2 1 4 4 O 1.21571 * 120.00224 * 184.46263 * 3 2 1 5 5 C 1.47649 * 119.99418 * 4.45496 * 3 2 1 6 6 C 1.39700 * 120.13080 * 310.16434 * 5 3 2 7 7 C 1.37782 * 119.89293 * 180.25510 * 6 5 3 8 8 C 1.38719 * 120.15412 * 0.04786 * 7 6 5 9 9 F 1.35098 * 119.86767 * 179.97438 * 8 7 6 10 10 C 1.38569 * 120.26381 * 359.96052 * 8 7 6 11 11 C 1.38026 * 120.10425 * 0.02562 * 10 8 7 12 12 Cl 1.73607 * 120.07843 * 179.97438 * 11 10 8 13 13 C 1.46498 * 119.99916 * 179.97438 * 2 1 3 14 14 H 1.09004 * 109.47404 * 180.02562 * 13 2 1 15 15 C 1.53004 * 109.46984 * 60.00268 * 13 2 1 16 16 N 1.46499 * 109.47144 * 55.00362 * 15 13 2 17 17 C 1.36938 * 119.99969 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99475 * 179.97438 * 17 16 15 20 20 N 1.31611 * 120.00511 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99367 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47273 * 90.00382 * 21 19 17 23 23 H 1.48505 * 109.46862 * 210.00032 * 21 19 17 24 24 H 1.48501 * 109.47391 * 329.99866 * 21 19 17 25 25 C 1.53006 * 109.47294 * 300.00504 * 13 2 1 26 26 C 1.52999 * 117.49608 * 248.74567 * 25 13 2 27 27 C 1.52998 * 117.49705 * 180.08747 * 25 13 2 28 28 H 1.09001 * 109.46622 * 92.93460 * 1 2 3 29 29 H 1.08998 * 109.47146 * 212.92708 * 1 2 3 30 30 H 1.08995 * 109.46925 * 332.93129 * 1 2 3 31 31 H 1.07994 * 120.05480 * 0.26533 * 6 5 3 32 32 H 1.07991 * 119.92497 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.94484 * 180.02562 * 10 8 7 34 34 H 1.09006 * 109.46911 * 175.00166 * 15 13 2 35 35 H 1.08997 * 109.47454 * 294.99720 * 15 13 2 36 36 H 0.97003 * 119.99882 * 359.97438 * 16 15 13 37 37 H 0.97003 * 120.00060 * 179.97438 * 20 19 17 38 38 H 1.08996 * 115.54827 * 34.41820 * 25 13 2 39 39 H 1.09001 * 117.50243 * 359.97438 * 26 25 13 40 40 H 1.09006 * 117.49621 * 145.02226 * 26 25 13 41 41 H 1.09008 * 117.49770 * 214.97683 * 27 25 13 42 42 H 1.09000 * 117.50295 * 359.97102 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3519 1.1687 -0.0819 5 6 1.4041 2.4439 0.0993 6 6 0.3190 2.6959 -0.7438 7 6 -0.3600 3.8911 -0.6505 8 6 0.0319 4.8446 0.2777 9 9 -0.6377 6.0148 0.3639 10 6 1.1073 4.6014 1.1171 11 6 1.7951 3.4077 1.0330 12 17 3.1428 3.1040 2.0845 13 6 2.1975 -1.2687 0.0006 14 1 3.2692 -1.0696 0.0009 15 6 1.8279 -2.0715 -1.2484 16 7 2.0708 -1.2574 -2.4419 17 6 1.8105 -1.7697 -3.6848 18 1 1.4265 -2.7740 -3.7853 19 6 2.0402 -0.9980 -4.8155 20 7 2.5086 0.2258 -4.6931 21 14 1.6843 -1.6967 -6.5111 22 1 0.2819 -1.3881 -6.8893 23 1 2.6092 -1.0885 -7.5011 24 1 1.8792 -3.1687 -6.4908 25 6 1.8278 -2.0706 1.2501 26 6 2.9087 -2.2536 2.3174 27 6 2.4943 -3.4350 1.4367 28 1 -0.3632 -0.0526 -1.0264 29 1 -0.3633 -0.8626 0.5586 30 1 -0.3633 0.9151 0.4676 31 1 0.0129 1.9550 -1.4674 32 1 -1.1991 4.0863 -1.3017 33 1 1.4078 5.3472 1.8381 34 1 2.4377 -2.9739 -1.2939 35 1 0.7742 -2.3470 -1.2047 36 1 2.4154 -0.3551 -2.3516 37 1 2.6695 0.7649 -5.4833 38 1 0.7978 -1.9629 1.5901 39 1 3.8832 -1.8031 2.1293 40 1 2.5897 -2.2667 3.3597 41 1 1.9029 -4.2250 1.8999 42 1 3.1959 -3.7617 0.6691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331355335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -26.900253 kcal Electronic energy + Delta-G solvation = -27779.217263 eV Core-core repulsion = 23700.671193 eV Total energy + Delta-G solvation = -4078.546071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.09751 -41.62571 -39.81508 -38.52442 -37.59873 -36.57115 -35.77019 -33.31043 -32.25619 -31.85790 -29.67557 -27.83440 -26.18570 -24.78550 -24.24501 -23.61892 -22.87898 -21.64978 -20.44566 -19.12502 -18.97031 -18.57707 -17.91390 -17.61440 -16.79543 -16.66266 -16.32045 -16.17756 -15.89261 -15.45545 -15.21907 -15.12767 -14.96132 -14.76985 -14.47549 -14.22910 -14.09085 -13.79205 -13.61876 -13.16690 -13.12855 -12.88325 -12.72512 -12.46806 -12.41561 -12.31752 -12.20570 -12.13505 -12.08871 -11.76188 -11.33871 -11.02949 -10.89362 -10.84849 -10.17235 -9.88827 -9.57655 -8.97791 -7.91021 -5.21043 -0.47166 -0.12358 0.86708 1.47179 1.49245 1.57537 1.58513 1.90137 2.28088 2.56363 2.90164 3.00103 3.38235 3.41742 3.51330 3.62807 3.80855 3.97828 4.00406 4.07337 4.13808 4.20231 4.29094 4.34959 4.44532 4.52882 4.63419 4.70433 4.74571 4.80402 4.87067 4.89037 4.95561 4.97201 5.05751 5.10142 5.27324 5.30650 5.48937 5.50396 5.63577 6.27963 6.35998 7.11101 7.35301 8.10899 8.34854 9.31621 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.004570 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.667591 B = 6125.751255 C = 8243.361170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.585 5.585 3 C 0.555 3.445 4 O -0.562 6.562 5 C -0.139 4.139 6 C -0.044 4.044 7 C -0.140 4.140 8 C 0.134 3.866 9 F -0.126 7.126 10 C -0.147 4.147 11 C 0.021 3.979 12 Cl -0.045 7.045 13 C 0.172 3.828 14 H 0.066 0.934 15 C 0.150 3.850 16 N -0.741 5.741 17 C -0.241 4.241 18 H 0.077 0.923 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.972 3.028 22 H -0.283 1.283 23 H -0.301 1.301 24 H -0.271 1.271 25 C -0.165 4.165 26 C -0.173 4.173 27 C -0.160 4.160 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.028 0.972 35 H 0.038 0.962 36 H 0.372 0.628 37 H 0.248 0.752 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 4.249 17.497 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.315 5.315 3 C 0.344 3.656 4 O -0.441 6.441 5 C -0.143 4.143 6 C -0.063 4.063 7 C -0.159 4.159 8 C 0.114 3.886 9 F -0.104 7.104 10 C -0.166 4.166 11 C -0.007 4.007 12 Cl -0.016 7.016 13 C 0.068 3.932 14 H 0.084 0.916 15 C 0.023 3.977 16 N -0.384 5.384 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.801 3.199 22 H -0.210 1.210 23 H -0.228 1.228 24 H -0.196 1.196 25 C -0.184 4.184 26 C -0.210 4.210 27 C -0.197 4.197 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.167 0.833 32 H 0.192 0.808 33 H 0.190 0.810 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.204 0.796 37 H 0.057 0.943 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.573 4.092 17.443 19.862 hybrid contribution 0.471 0.310 -1.233 1.355 sum -8.102 4.402 16.211 18.649 Atomic orbital electron populations 1.22136 0.77783 1.04697 1.02517 1.47545 1.08106 1.04541 1.71326 1.18368 0.86794 0.84315 0.76170 1.90793 1.15169 1.87345 1.50764 1.19830 0.99075 0.95280 1.00119 1.21340 0.91357 0.97659 0.95928 1.21414 1.02828 0.92222 0.99402 1.17622 0.91831 0.82507 0.96623 1.91555 1.78692 1.44864 1.95291 1.21043 0.96049 0.97030 1.02478 1.20633 0.91579 0.94393 0.94083 1.98407 1.43531 1.95797 1.63864 1.20703 0.96118 0.82514 0.93879 0.91572 1.21075 0.98384 0.93098 0.85174 1.42514 1.78705 1.15721 1.01424 1.19605 1.34748 0.98153 0.84758 0.90465 1.25534 1.02823 0.96757 1.01415 1.69867 1.52900 1.10231 1.28808 0.85168 0.77108 0.77764 0.79856 1.20991 1.22819 1.19550 1.22451 0.99490 1.00004 0.96468 1.23035 0.98441 1.02632 0.96912 1.23009 1.03197 0.91168 1.02350 0.92743 0.88672 0.89222 0.83329 0.80762 0.80975 0.95458 0.94426 0.79618 0.94278 0.85360 0.90593 0.86761 0.86077 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.72 8.26 127.77 1.06 2.77 16 2 N -0.58 -19.07 2.24 -826.21 -1.85 -20.93 16 3 C 0.56 20.67 6.43 86.73 0.56 21.23 16 4 O -0.56 -25.71 15.22 -3.94 -0.06 -25.77 16 5 C -0.14 -4.22 4.87 -20.07 -0.10 -4.32 16 6 C -0.04 -1.14 7.64 22.52 0.17 -0.97 16 7 C -0.14 -2.82 10.01 22.28 0.22 -2.60 16 8 C 0.13 2.69 7.31 22.46 0.16 2.86 16 9 F -0.13 -2.42 17.26 44.97 0.78 -1.64 16 10 C -0.15 -3.09 9.79 22.30 0.22 -2.87 16 11 C 0.02 0.57 6.34 22.59 0.14 0.71 16 12 Cl -0.05 -1.28 27.19 -2.72 -0.07 -1.36 16 13 C 0.17 5.85 2.42 45.00 0.11 5.96 16 14 H 0.07 2.74 6.66 -2.38 -0.02 2.73 16 15 C 0.15 5.91 5.32 86.38 0.46 6.37 16 16 N -0.74 -38.05 5.43 -343.45 -1.87 -39.92 16 17 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 19 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 20 N -0.97 -60.26 13.06 21.65 0.28 -59.97 16 21 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C -0.16 -4.06 5.16 -10.79 -0.06 -4.11 16 26 C -0.17 -3.92 10.18 30.62 0.31 -3.61 16 27 C -0.16 -3.45 9.80 30.62 0.30 -3.15 16 28 H 0.05 1.51 7.57 -2.39 -0.02 1.49 16 29 H 0.09 1.81 6.40 -2.39 -0.02 1.80 16 30 H 0.09 1.80 5.71 -2.39 -0.01 1.78 16 31 H 0.15 4.06 6.63 -2.91 -0.02 4.04 16 32 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.03 1.10 7.48 -2.38 -0.02 1.08 16 35 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 36 H 0.37 21.20 7.06 -92.71 -0.65 20.54 16 37 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.13 2.59 6.55 -2.39 -0.02 2.57 16 39 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 40 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.08 2.09 7.67 -2.39 -0.02 2.07 16 Total: -1.00 -72.49 366.46 4.51 -67.98 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.41 Total: 31.42 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 4.87 Total: 1.99 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -3.44 Total: -120.82 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.36 kcal Total: -72.49 4.51 -67.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331355335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.078 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds