Wall clock time and date at job start Sat Apr 11 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86791 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47285 * 274.70656 * 3 2 1 5 5 H 1.48507 * 109.47336 * 34.70357 * 3 2 1 6 6 H 1.48496 * 109.47321 * 154.70516 * 3 2 1 7 7 C 1.39946 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00021 * 161.38006 * 7 2 1 9 9 C 1.41400 * 120.00163 * 341.66395 * 7 2 1 10 10 C 1.40444 * 119.96286 * 334.89080 * 9 7 2 11 11 C 1.37600 * 119.53987 * 179.89552 * 10 9 7 12 12 C 1.38379 * 119.98971 * 0.65562 * 11 10 9 13 13 C 1.39253 * 121.04744 * 359.75584 * 12 11 10 14 14 C 1.37083 * 119.98290 * 359.53110 * 13 12 11 15 15 C 1.50570 * 122.99762 * 181.29688 * 14 13 12 16 16 C 1.52791 * 110.87522 * 339.81426 * 15 14 13 17 17 N 1.47239 * 107.85702 * 47.37123 * 16 15 14 18 18 C 1.34775 * 121.33997 * 115.93934 * 17 16 15 19 19 O 1.21598 * 120.00479 * 353.47154 * 18 17 16 20 20 C 1.47493 * 119.99532 * 173.46764 * 18 17 16 21 21 C 1.37813 * 126.77720 * 340.57077 * 20 18 17 22 22 O 1.33498 * 108.34132 * 179.97438 * 21 20 18 23 23 C 1.34881 * 109.89111 * 0.02562 * 22 21 20 24 24 C 1.46776 * 125.65518 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00068 * 0.02562 * 24 23 22 26 26 O 1.21677 * 120.00006 * 180.02562 * 24 23 22 27 27 C 1.36061 * 108.68918 * 359.75931 * 23 22 21 28 28 C 1.46668 * 117.31279 * 295.95723 * 17 16 15 29 29 H 0.97002 * 119.99538 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.22965 * 0.09583 * 10 9 7 31 31 H 1.07995 * 120.00633 * 180.39691 * 11 10 9 32 32 H 1.08000 * 119.47827 * 179.74128 * 12 11 10 33 33 H 1.09004 * 109.19568 * 100.17326 * 15 14 13 34 34 H 1.08999 * 109.20003 * 219.45164 * 15 14 13 35 35 H 1.09004 * 109.78036 * 166.96017 * 16 15 14 36 36 H 1.09002 * 109.78168 * 287.72362 * 16 15 14 37 37 H 1.07996 * 125.82590 * 359.97438 * 21 20 18 38 38 H 0.97001 * 120.00081 * 0.02562 * 25 24 23 39 39 H 0.97003 * 120.00181 * 180.02562 * 25 24 23 40 40 H 1.08005 * 126.68613 * 180.26760 * 27 23 22 41 41 H 1.09001 * 109.42511 * 164.43428 * 28 17 16 42 42 H 1.08997 * 109.43320 * 284.27878 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3904 2.1038 -1.3953 5 1 1.4931 2.6219 0.7971 6 1 3.5861 1.4134 0.5982 7 6 2.0080 -1.2120 0.0005 8 1 3.0455 -1.2367 -0.2981 9 6 1.3548 -2.4053 0.3863 10 6 0.2415 -2.3509 1.2408 11 6 -0.3888 -3.5173 1.6089 12 6 0.0834 -4.7338 1.1484 13 6 1.1915 -4.8024 0.3077 14 6 1.8265 -3.6524 -0.0839 15 6 3.0115 -3.6456 -1.0128 16 6 3.6879 -5.0153 -1.0424 17 7 2.6381 -6.0337 -1.2123 18 6 2.5861 -6.8100 -2.3128 19 8 3.3415 -6.5990 -3.2420 20 6 1.6128 -7.9155 -2.3900 21 6 0.9650 -8.5197 -1.3343 22 8 0.1684 -9.4741 -1.8209 23 6 0.2723 -9.5174 -3.1650 24 6 -0.4515 -10.4380 -4.0498 25 7 -1.3076 -11.3395 -3.5294 26 8 -0.2785 -10.3874 -5.2531 27 6 1.1555 -8.5629 -3.5650 28 6 1.6512 -6.1689 -0.1359 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1193 -1.3998 1.6038 31 1 -1.2494 -3.4837 2.2605 32 1 -0.4151 -5.6445 1.4459 33 1 2.6774 -3.3890 -2.0181 34 1 3.7291 -2.8988 -0.6730 35 1 4.3872 -5.0635 -1.8772 36 1 4.2193 -5.1847 -0.1059 37 1 1.0818 -8.2645 -0.2914 38 1 -1.4457 -11.3796 -2.5701 39 1 -1.7856 -11.9482 -4.1141 40 1 1.4516 -8.3424 -4.5800 41 1 0.7958 -6.7395 -0.4978 42 1 2.1035 -6.6908 0.7074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363404899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:14 Heat of formation + Delta-G solvation = -27.406273 kcal Electronic energy + Delta-G solvation = -28644.931259 eV Core-core repulsion = 24556.423306 eV Total energy + Delta-G solvation = -4088.507953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.07257 -39.88882 -39.41939 -38.05291 -35.61451 -34.23854 -33.76226 -33.42911 -32.17909 -30.34056 -30.18997 -28.72892 -25.69602 -25.19869 -24.25127 -23.55422 -22.29631 -21.08976 -20.72311 -20.02210 -19.10646 -17.91765 -17.36531 -17.18361 -16.77616 -16.62267 -16.00110 -15.71710 -15.38609 -15.13295 -14.66560 -14.57178 -14.41847 -13.79628 -13.67878 -13.41753 -13.33033 -13.18990 -12.95518 -12.54935 -12.48023 -11.78329 -11.60438 -11.51419 -11.40058 -11.12230 -10.79627 -10.67814 -10.56488 -10.38576 -10.22684 -10.15326 -9.93385 -9.73168 -9.39929 -9.20723 -8.96798 -8.37604 -7.44806 -7.37342 -6.85551 -4.44309 0.70116 1.48168 2.29335 2.67195 2.76636 2.82117 2.95133 3.02557 3.05361 3.13328 3.27472 3.39263 3.86233 4.31745 4.38514 4.49160 4.63551 5.07709 5.20291 5.28337 5.36811 5.47932 5.57864 5.65636 5.71162 5.79760 5.88330 5.94115 6.19099 6.22889 6.26789 6.35724 6.42452 6.65745 6.72673 6.85868 6.91702 7.02749 7.10224 7.22610 7.47938 7.56283 7.76441 7.76496 7.91484 7.95022 8.16049 8.28981 8.52193 8.78175 8.85212 10.08893 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002718 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.946469 B =10299.335516 C =10780.653777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.113 3.887 10 C -0.166 4.166 11 C -0.101 4.101 12 C -0.239 4.239 13 C -0.079 4.079 14 C -0.172 4.172 15 C -0.069 4.069 16 C 0.115 3.885 17 N -0.598 5.598 18 C 0.588 3.412 19 O -0.539 6.539 20 C -0.229 4.229 21 C 0.039 3.961 22 O -0.155 6.155 23 C -0.098 4.098 24 C 0.614 3.386 25 N -0.844 5.844 26 O -0.520 6.520 27 C -0.058 4.058 28 C 0.140 3.860 29 H 0.281 0.719 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.232 0.768 38 H 0.407 0.593 39 H 0.409 0.591 40 H 0.170 0.830 41 H 0.087 0.913 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -15.859 1.473 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.111 3.889 10 C -0.185 4.185 11 C -0.120 4.120 12 C -0.259 4.259 13 C -0.080 4.080 14 C -0.174 4.174 15 C -0.107 4.107 16 C -0.006 4.006 17 N -0.329 5.329 18 C 0.376 3.624 19 O -0.418 6.418 20 C -0.233 4.233 21 C -0.034 4.034 22 O -0.049 6.049 23 C -0.149 4.149 24 C 0.398 3.602 25 N -0.408 5.408 26 O -0.397 6.397 27 C -0.079 4.079 28 C 0.018 3.982 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.236 0.764 39 H 0.241 0.759 40 H 0.188 0.812 41 H 0.105 0.895 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.786 -15.617 0.351 15.641 hybrid contribution -0.148 0.828 0.393 0.928 sum -0.934 -14.789 0.743 14.837 Atomic orbital electron populations 1.69834 1.07645 1.29334 1.34599 1.25913 0.94690 1.01370 0.92173 0.86346 0.80818 0.80763 0.79158 1.19519 1.20028 1.18332 1.19628 0.98389 0.91165 1.39707 0.89995 1.17576 0.91171 0.91362 0.88800 1.21237 0.99582 0.96899 1.00778 1.20565 0.98505 0.93256 0.99634 1.20108 1.01119 0.96385 1.08239 1.18982 0.97129 0.92017 0.99879 1.19199 1.01287 0.92708 1.04177 1.20427 0.96351 0.94690 0.99194 1.21760 0.89428 0.87548 1.01896 1.47879 1.29728 1.36290 1.19042 1.17124 0.82496 0.80772 0.81992 1.90773 1.43084 1.71546 1.36362 1.20761 1.05511 1.03305 0.93747 1.25858 0.89908 0.87504 1.00082 1.83912 1.53197 1.46926 1.20853 1.21753 1.07303 1.05091 0.80719 1.16469 0.78455 0.79145 0.86089 1.43661 1.46092 1.38253 1.12751 1.90949 1.65018 1.70491 1.13292 1.21891 0.93603 0.92138 1.00291 1.20980 0.90917 0.97444 0.88905 0.90803 0.86542 0.89315 0.89498 0.92019 0.90416 0.89377 0.91157 0.75231 0.76352 0.75912 0.81203 0.89517 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 11.01 55.55 0.61 -19.08 16 2 C 0.08 1.85 5.11 -17.34 -0.09 1.76 16 3 Si 0.90 17.99 29.60 -169.99 -5.03 12.96 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.40 8.36 -37.74 -0.32 -11.72 16 8 H 0.08 1.94 6.22 -52.49 -0.33 1.61 16 9 C 0.11 2.81 5.58 -106.67 -0.60 2.21 16 10 C -0.17 -4.05 8.68 -38.98 -0.34 -4.39 16 11 C -0.10 -2.19 10.03 -39.76 -0.40 -2.59 16 12 C -0.24 -4.70 9.63 -39.15 -0.38 -5.08 16 13 C -0.08 -1.56 5.82 -104.59 -0.61 -2.16 16 14 C -0.17 -3.80 5.82 -103.91 -0.60 -4.41 16 15 C -0.07 -1.35 5.26 -28.05 -0.15 -1.50 16 16 C 0.12 1.91 6.43 -3.75 -0.02 1.88 16 17 N -0.60 -9.72 2.94 -175.61 -0.52 -10.24 16 18 C 0.59 9.96 7.69 -12.49 -0.10 9.87 16 19 O -0.54 -10.80 16.50 5.28 0.09 -10.72 16 20 C -0.23 -3.20 5.80 -104.95 -0.61 -3.80 16 21 C 0.04 0.41 9.89 30.58 0.30 0.71 16 22 O -0.15 -1.55 10.33 6.20 0.06 -1.48 16 23 C -0.10 -1.15 7.09 -36.91 -0.26 -1.41 16 24 C 0.61 6.85 8.06 -12.81 -0.10 6.75 16 25 N -0.84 -5.47 8.87 30.28 0.27 -5.21 16 26 O -0.52 -7.68 17.68 5.21 0.09 -7.59 16 27 C -0.06 -0.80 10.47 -39.03 -0.41 -1.21 16 28 C 0.14 2.06 4.67 -5.03 -0.02 2.04 16 29 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 30 H 0.12 2.97 6.20 -52.49 -0.33 2.65 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 1.43 8.05 -52.49 -0.42 1.01 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.49 6.42 -51.93 -0.33 1.15 16 35 H 0.09 1.45 7.11 -51.93 -0.37 1.08 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.23 1.71 5.60 -52.49 -0.29 1.42 16 38 H 0.41 1.73 8.57 -40.82 -0.35 1.38 16 39 H 0.41 1.92 8.93 -40.82 -0.36 1.55 16 40 H 0.17 2.40 8.06 -52.48 -0.42 1.98 16 41 H 0.09 1.12 4.40 -51.93 -0.23 0.89 16 42 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -31.65 352.82 -8.06 -39.71 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.25 Total: 9.39 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -4.70 Total: -13.06 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.36 Total: -34.53 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.24 Total: -19.79 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.65 -8.06 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363404899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.304 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds