Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86791 * 120.00277 * 2 1 4 4 H 1.48501 * 109.47285 * 274.70656 * 3 2 1 5 5 H 1.48507 * 109.47336 * 34.70357 * 3 2 1 6 6 H 1.48496 * 109.47321 * 154.70516 * 3 2 1 7 7 C 1.39946 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00021 * 161.38006 * 7 2 1 9 9 C 1.41400 * 120.00163 * 341.66395 * 7 2 1 10 10 C 1.40444 * 119.96286 * 334.89080 * 9 7 2 11 11 C 1.37600 * 119.53987 * 179.89552 * 10 9 7 12 12 C 1.38379 * 119.98971 * 0.65562 * 11 10 9 13 13 C 1.39253 * 121.04744 * 359.75584 * 12 11 10 14 14 C 1.37083 * 119.98290 * 359.53110 * 13 12 11 15 15 C 1.50570 * 122.99762 * 181.29688 * 14 13 12 16 16 C 1.52791 * 110.87522 * 339.81426 * 15 14 13 17 17 N 1.47239 * 107.85702 * 47.37123 * 16 15 14 18 18 C 1.34775 * 121.33997 * 115.93934 * 17 16 15 19 19 O 1.21598 * 120.00479 * 353.47154 * 18 17 16 20 20 C 1.47493 * 119.99532 * 173.46764 * 18 17 16 21 21 C 1.37813 * 126.77720 * 340.57077 * 20 18 17 22 22 O 1.33498 * 108.34132 * 179.97438 * 21 20 18 23 23 C 1.34881 * 109.89111 * 0.02562 * 22 21 20 24 24 C 1.46776 * 125.65518 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00068 * 0.02562 * 24 23 22 26 26 O 1.21677 * 120.00006 * 180.02562 * 24 23 22 27 27 C 1.36061 * 108.68918 * 359.75931 * 23 22 21 28 28 C 1.46668 * 117.31279 * 295.95723 * 17 16 15 29 29 H 0.97002 * 119.99538 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.22965 * 0.09583 * 10 9 7 31 31 H 1.07995 * 120.00633 * 180.39691 * 11 10 9 32 32 H 1.08000 * 119.47827 * 179.74128 * 12 11 10 33 33 H 1.09004 * 109.19568 * 100.17326 * 15 14 13 34 34 H 1.08999 * 109.20003 * 219.45164 * 15 14 13 35 35 H 1.09004 * 109.78036 * 166.96017 * 16 15 14 36 36 H 1.09002 * 109.78168 * 287.72362 * 16 15 14 37 37 H 1.07996 * 125.82590 * 359.97438 * 21 20 18 38 38 H 0.97001 * 120.00081 * 0.02562 * 25 24 23 39 39 H 0.97003 * 120.00181 * 180.02562 * 25 24 23 40 40 H 1.08005 * 126.68613 * 180.26760 * 27 23 22 41 41 H 1.09001 * 109.42511 * 164.43428 * 28 17 16 42 42 H 1.08997 * 109.43320 * 284.27878 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3904 2.1038 -1.3953 5 1 1.4931 2.6219 0.7971 6 1 3.5861 1.4134 0.5982 7 6 2.0080 -1.2120 0.0005 8 1 3.0455 -1.2367 -0.2981 9 6 1.3548 -2.4053 0.3863 10 6 0.2415 -2.3509 1.2408 11 6 -0.3888 -3.5173 1.6089 12 6 0.0834 -4.7338 1.1484 13 6 1.1915 -4.8024 0.3077 14 6 1.8265 -3.6524 -0.0839 15 6 3.0115 -3.6456 -1.0128 16 6 3.6879 -5.0153 -1.0424 17 7 2.6381 -6.0337 -1.2123 18 6 2.5861 -6.8100 -2.3128 19 8 3.3415 -6.5990 -3.2420 20 6 1.6128 -7.9155 -2.3900 21 6 0.9650 -8.5197 -1.3343 22 8 0.1684 -9.4741 -1.8209 23 6 0.2723 -9.5174 -3.1650 24 6 -0.4515 -10.4380 -4.0498 25 7 -1.3076 -11.3395 -3.5294 26 8 -0.2785 -10.3874 -5.2531 27 6 1.1555 -8.5629 -3.5650 28 6 1.6512 -6.1689 -0.1359 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1193 -1.3998 1.6038 31 1 -1.2494 -3.4837 2.2605 32 1 -0.4151 -5.6445 1.4459 33 1 2.6774 -3.3890 -2.0181 34 1 3.7291 -2.8988 -0.6730 35 1 4.3872 -5.0635 -1.8772 36 1 4.2193 -5.1847 -0.1059 37 1 1.0818 -8.2645 -0.2914 38 1 -1.4457 -11.3796 -2.5701 39 1 -1.7856 -11.9482 -4.1141 40 1 1.4516 -8.3424 -4.5800 41 1 0.7958 -6.7395 -0.4978 42 1 2.1035 -6.6908 0.7074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363404899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -49.427135 kcal Electronic energy + Delta-G solvation = -28645.886155 eV Core-core repulsion = 24556.423306 eV Total energy + Delta-G solvation = -4089.462849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -43.99352 -41.21775 -40.32801 -39.59316 -37.09397 -35.46262 -35.07447 -34.46425 -33.55929 -31.82840 -31.40879 -30.17043 -27.20285 -26.78720 -25.35666 -24.66902 -23.60609 -22.39820 -22.04531 -21.28281 -20.22254 -19.08251 -18.89663 -18.04684 -17.84927 -17.62859 -17.33675 -16.93412 -16.85007 -16.51825 -16.05846 -15.60124 -15.51607 -15.23561 -15.08047 -14.93378 -14.45965 -14.33806 -14.30551 -14.00992 -13.80133 -13.30718 -13.19099 -13.09915 -12.93507 -12.68976 -12.28731 -12.16759 -11.98867 -11.73939 -11.47603 -11.28931 -11.15467 -11.08280 -10.94445 -10.87673 -9.92268 -9.71022 -9.18747 -9.01817 -8.62123 -6.28590 -0.18173 0.42160 1.00414 1.08152 1.36643 1.39742 1.47028 1.52754 1.76838 1.92236 2.19290 2.20541 2.48192 2.74497 3.27692 3.57605 3.67748 3.71901 3.89305 4.11433 4.22205 4.28114 4.33352 4.38956 4.47315 4.54770 4.64653 4.67459 4.77431 4.87851 4.90001 5.08175 5.15314 5.28712 5.34523 5.39124 5.42567 5.56420 5.74155 5.78811 6.00625 6.17590 6.21496 6.25761 6.30873 6.48340 6.75814 6.98642 7.01799 7.08884 7.09481 8.34213 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002718 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.946469 B =10299.335516 C =10780.653777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.494 4.494 8 H 0.079 0.921 9 C 0.079 3.921 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.224 4.224 13 C -0.081 4.081 14 C -0.190 4.190 15 C -0.063 4.063 16 C 0.122 3.878 17 N -0.599 5.599 18 C 0.586 3.414 19 O -0.583 6.583 20 C -0.261 4.261 21 C 0.077 3.923 22 O -0.134 6.134 23 C -0.089 4.089 24 C 0.612 3.388 25 N -0.815 5.815 26 O -0.565 6.565 27 C -0.084 4.084 28 C 0.140 3.860 29 H 0.285 0.715 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.136 0.864 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.272 0.728 38 H 0.422 0.578 39 H 0.421 0.579 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -19.076 3.560 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.077 3.923 10 C -0.218 4.218 11 C -0.129 4.129 12 C -0.243 4.243 13 C -0.082 4.082 14 C -0.191 4.191 15 C -0.100 4.100 16 C 0.000 4.000 17 N -0.329 5.329 18 C 0.376 3.624 19 O -0.465 6.465 20 C -0.265 4.265 21 C 0.004 3.996 22 O -0.026 6.026 23 C -0.140 4.140 24 C 0.396 3.604 25 N -0.379 5.379 26 O -0.446 6.446 27 C -0.106 4.106 28 C 0.019 3.981 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.288 0.712 38 H 0.254 0.746 39 H 0.255 0.745 40 H 0.169 0.831 41 H 0.132 0.868 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.630 -18.883 2.493 19.117 hybrid contribution 0.008 1.642 -0.202 1.655 sum -1.621 -17.241 2.291 17.468 Atomic orbital electron populations 1.69901 1.08939 1.30177 1.36394 1.26675 0.95372 1.04330 0.91549 0.85345 0.79522 0.76745 0.79072 1.19353 1.19261 1.17989 1.19847 0.98581 0.92419 1.41547 0.90301 1.17953 0.91987 0.92713 0.89661 1.21204 1.00868 0.97255 1.02445 1.20901 0.98921 0.93273 0.99815 1.20635 1.00264 0.97254 1.06173 1.19517 0.96356 0.93645 0.98659 1.19558 1.02110 0.92977 1.04490 1.20323 0.95925 0.96851 0.96939 1.21658 0.89386 0.85836 1.03089 1.47929 1.29798 1.35830 1.19375 1.17528 0.82366 0.81234 0.81247 1.90747 1.44978 1.72944 1.37840 1.20537 1.06883 1.03909 0.95173 1.26414 0.87209 0.85395 1.00534 1.83959 1.52560 1.46390 1.19713 1.21671 1.06561 1.04423 0.81346 1.16474 0.78919 0.79633 0.85367 1.43462 1.44059 1.36549 1.13861 1.90936 1.66667 1.71870 1.15090 1.21864 0.95104 0.93603 0.99994 1.21282 0.91950 0.94936 0.89972 0.90490 0.88985 0.87274 0.84651 0.94976 0.90933 0.89808 0.88482 0.71247 0.74559 0.74517 0.83062 0.86806 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.48 11.01 21.83 0.24 -43.24 16 2 C 0.04 1.76 5.11 85.26 0.44 2.20 16 3 Si 0.97 38.45 29.60 68.60 2.03 40.48 16 4 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.49 -25.85 8.36 23.46 0.20 -25.65 16 8 H 0.08 3.97 6.22 -2.91 -0.02 3.95 16 9 C 0.08 4.05 5.58 -21.19 -0.12 3.93 16 10 C -0.20 -9.97 8.68 22.66 0.20 -9.77 16 11 C -0.11 -4.64 10.03 22.15 0.22 -4.42 16 12 C -0.22 -7.89 9.63 22.55 0.22 -7.67 16 13 C -0.08 -2.92 5.82 -19.84 -0.12 -3.03 16 14 C -0.19 -8.37 5.82 -19.40 -0.11 -8.48 16 15 C -0.06 -2.51 5.26 29.74 0.16 -2.36 16 16 C 0.12 3.91 6.43 86.17 0.55 4.46 16 17 N -0.60 -17.90 2.94 -827.76 -2.43 -20.33 16 18 C 0.59 19.07 7.69 86.68 0.67 19.73 16 19 O -0.58 -23.77 16.50 -4.02 -0.07 -23.84 16 20 C -0.26 -6.64 5.80 -20.08 -0.12 -6.75 16 21 C 0.08 1.20 9.89 67.72 0.67 1.87 16 22 O -0.13 -2.02 10.33 -0.74 -0.01 -2.03 16 23 C -0.09 -1.87 7.09 24.00 0.17 -1.70 16 24 C 0.61 12.49 8.06 86.48 0.70 13.18 16 25 N -0.82 -7.94 8.87 -176.33 -1.56 -9.50 16 26 O -0.57 -16.48 17.68 -4.28 -0.08 -16.55 16 27 C -0.08 -2.26 10.47 22.63 0.24 -2.03 16 28 C 0.14 3.39 4.67 85.65 0.40 3.79 16 29 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 30 H 0.09 4.98 6.20 -2.91 -0.02 4.96 16 31 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.14 3.48 8.05 -2.91 -0.02 3.46 16 33 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.07 2.92 6.42 -2.39 -0.02 2.90 16 35 H 0.08 2.76 7.11 -2.38 -0.02 2.74 16 36 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.27 1.84 5.60 -2.91 -0.02 1.83 16 38 H 0.42 1.76 8.57 -92.71 -0.79 0.97 16 39 H 0.42 2.67 8.93 -92.71 -0.83 1.84 16 40 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.11 2.17 4.40 -2.39 -0.01 2.16 16 42 H 0.12 1.94 8.02 -2.39 -0.02 1.92 16 Total: -1.00 -75.94 352.82 1.99 -73.95 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.49 Total: 23.77 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.36 Total: -22.70 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -3.75 Total: -73.07 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.15 Total: -42.42 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -75.94 1.99 -73.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363404899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.520 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds