Wall clock time and date at job start Sat Apr 11 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46540 * 2 1 4 4 C 1.50696 * 109.47304 * 119.99514 * 2 1 3 5 5 H 1.08002 * 119.99583 * 119.99815 * 4 2 1 6 6 C 1.37875 * 120.00424 * 300.00587 * 4 2 1 7 7 N 1.31517 * 119.99846 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00425 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47419 * 119.99674 * 8 6 4 11 11 H 1.48503 * 109.47480 * 239.99873 * 8 6 4 12 12 C 1.50700 * 109.47021 * 240.00047 * 2 1 3 13 13 O 1.21285 * 119.99766 * 239.99243 * 12 2 1 14 14 N 1.34773 * 120.00285 * 60.00042 * 12 2 1 15 15 C 1.46492 * 120.00216 * 179.97438 * 14 12 2 16 16 H 1.09000 * 110.76869 * 31.79539 * 15 14 12 17 17 C 1.55142 * 110.70751 * 268.59698 * 15 14 12 18 18 C 1.54903 * 101.65593 * 205.96168 * 17 15 14 19 19 N 1.47847 * 104.79476 * 37.07033 * 18 17 15 20 20 C 1.39325 * 110.99975 * 213.63779 * 19 18 17 21 21 C 1.39531 * 121.07832 * 60.86597 * 20 19 18 22 22 N 1.31675 * 119.85238 * 179.97438 * 21 20 19 23 23 N 1.28302 * 122.36767 * 359.97438 * 22 21 20 24 24 C 1.32430 * 122.31778 * 0.02562 * 23 22 21 25 25 O 1.35729 * 120.10062 * 179.97438 * 24 23 22 26 26 C 1.39057 * 119.79736 * 359.97438 * 24 23 22 27 27 Cl 1.73608 * 121.09104 * 180.27445 * 26 24 23 28 28 C 1.47443 * 108.56873 * 335.90377 * 19 18 17 29 29 H 1.09001 * 109.46540 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47395 * 300.00090 * 1 2 3 31 31 H 1.08997 * 109.47249 * 60.00434 * 1 2 3 32 32 H 0.96999 * 119.99921 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99693 * 359.97438 * 14 12 2 34 34 H 1.09001 * 110.98971 * 324.05405 * 17 15 14 35 35 H 1.09001 * 110.98795 * 87.83512 * 17 15 14 36 36 H 1.09004 * 110.37600 * 278.24150 * 18 17 15 37 37 H 1.09001 * 110.37524 * 155.90100 * 18 17 15 38 38 H 1.08001 * 120.07918 * 359.95046 * 21 20 19 39 39 H 0.96700 * 113.99821 * 270.02574 * 25 24 23 40 40 H 1.09000 * 109.88734 * 120.39355 * 28 19 18 41 41 H 1.09003 * 109.88908 * 241.42235 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1201 4.0079 9 1 3.1456 -2.2875 3.6038 10 1 3.1466 -0.1871 4.8165 11 1 1.1662 -1.5865 4.8161 12 6 2.0323 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1955 -0.9402 -3.6507 16 1 2.2947 -2.0099 -3.4662 17 6 3.5460 -0.3370 -4.1188 18 6 3.5297 -0.6697 -5.6316 19 7 2.1184 -0.5034 -6.0396 20 6 1.7771 -1.4126 -7.0386 21 6 1.8493 -2.7882 -6.8159 22 7 1.5204 -3.6259 -7.7771 23 7 1.1283 -3.2268 -8.9318 24 6 1.0267 -1.9429 -9.2402 25 8 0.6074 -1.5709 -10.4763 26 6 1.3509 -0.9771 -8.2937 27 17 1.2232 0.7152 -8.6597 28 6 1.2626 -0.6778 -4.8517 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.7088 1.1614 3.4844 33 1 1.1488 0.5385 -2.5435 34 1 3.5695 0.7406 -3.9563 35 1 4.3846 -0.8234 -3.6205 36 1 3.8543 -1.6969 -5.7978 37 1 4.1674 0.0240 -6.1796 38 1 2.1745 -3.1650 -5.8575 39 1 1.3223 -1.4656 -11.1190 40 1 0.6804 0.2272 -4.6781 41 1 0.5942 -1.5264 -4.9975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413763044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:32 Heat of formation + Delta-G solvation = -7.413677 kcal Electronic energy + Delta-G solvation = -26866.519756 eV Core-core repulsion = 22808.738648 eV Total energy + Delta-G solvation = -4057.781108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.97430 -39.97926 -38.57744 -38.03226 -37.11295 -34.73916 -33.78767 -32.58989 -31.84173 -30.58638 -29.78397 -28.39011 -25.18417 -25.11258 -24.47888 -22.89349 -21.77955 -21.00636 -19.63837 -19.49452 -18.65022 -17.80563 -16.96368 -16.53512 -16.46856 -15.95930 -15.76882 -14.78475 -14.60568 -14.55521 -14.44267 -14.18121 -13.46839 -13.41576 -13.15540 -12.91428 -12.76216 -12.67590 -12.60152 -12.27908 -11.92488 -11.77375 -11.53872 -11.38689 -11.08859 -11.02439 -10.77342 -10.69900 -10.31557 -10.29285 -10.26196 -10.00773 -9.93667 -9.11832 -9.01502 -8.72707 -8.59902 -8.38605 -6.07551 -4.10850 -0.04759 0.10217 1.38575 2.55227 2.78395 3.08630 3.29335 3.37258 3.44661 3.57656 3.61977 3.68766 3.91549 4.20287 4.38426 4.43702 4.53973 4.57586 4.83463 4.85976 4.93637 5.05934 5.21192 5.26106 5.36650 5.50424 5.57749 5.76747 5.95394 6.12924 6.25268 6.44553 6.56043 6.69933 6.76506 6.85569 6.94371 7.41632 7.70586 7.92596 8.04977 8.07532 8.35544 8.98437 9.12366 9.55114 11.00063 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.002279 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.620118 B =12283.929385 C =12635.578816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.544 6.544 14 N -0.737 5.737 15 C 0.128 3.872 16 H 0.096 0.904 17 C -0.139 4.139 18 C 0.046 3.954 19 N -0.486 5.486 20 C 0.119 3.881 21 C 0.018 3.982 22 N -0.201 5.201 23 N -0.248 5.248 24 C 0.276 3.724 25 O -0.462 6.462 26 C -0.047 4.047 27 Cl -0.002 7.002 28 C 0.039 3.961 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.399 0.601 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.184 0.816 39 H 0.409 0.591 40 H 0.098 0.902 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 0.651 -24.489 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.313 3.687 13 O -0.419 6.419 14 N -0.391 5.391 15 C 0.021 3.979 16 H 0.114 0.886 17 C -0.178 4.178 18 C -0.079 4.079 19 N -0.208 5.208 20 C 0.011 3.989 21 C -0.150 4.150 22 N -0.045 5.045 23 N -0.100 5.100 24 C 0.089 3.911 25 O -0.267 6.267 26 C -0.087 4.087 27 Cl 0.027 6.973 28 C -0.088 4.088 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.201 0.799 39 H 0.268 0.732 40 H 0.116 0.884 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.314 -0.825 -24.800 24.849 hybrid contribution 0.614 0.950 1.208 1.655 sum 1.928 0.125 -23.592 23.671 Atomic orbital electron populations 1.21751 0.96507 0.99824 1.01001 1.18880 0.94152 0.96862 0.89241 0.92935 1.21171 1.30975 1.12813 0.88965 0.90748 1.24952 0.95105 0.95059 0.99159 1.69876 1.37107 1.23086 1.23493 0.86408 0.78640 0.79784 0.82490 1.19565 1.21039 1.21040 1.22048 0.78195 0.84129 0.84370 1.90535 1.37843 1.26869 1.86662 1.46247 1.55461 1.32466 1.04919 1.21953 0.92243 0.98658 0.85093 0.88561 1.23178 0.98886 1.02918 0.92867 1.23235 0.86547 1.01326 0.96821 1.61133 1.05145 1.46211 1.08317 1.20017 0.95336 0.90995 0.92509 1.25255 0.97791 0.90429 1.01497 1.72865 1.05877 1.30653 0.95129 1.73077 1.10843 1.13421 1.12679 1.20736 0.93726 0.88626 0.88058 1.84833 1.36183 1.88284 1.17448 1.22673 1.01805 0.89292 0.94932 1.98424 1.95645 1.09333 1.93906 1.23261 0.95149 1.03205 0.87154 0.95006 0.88808 0.96900 0.92983 0.76655 0.89600 0.89390 0.92347 0.88915 0.79948 0.73218 0.88393 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.87 37.16 0.33 -2.58 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 4 C -0.50 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.07 2.17 6.75 -52.49 -0.35 1.81 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 10.92 7.15 -10.99 -0.08 10.84 16 13 O -0.54 -13.13 15.11 5.55 0.08 -13.05 16 14 N -0.74 -11.10 5.07 -52.04 -0.26 -11.37 16 15 C 0.13 1.54 3.31 -66.11 -0.22 1.33 16 16 H 0.10 1.31 7.55 -51.93 -0.39 0.92 16 17 C -0.14 -1.46 6.76 -24.59 -0.17 -1.63 16 18 C 0.05 0.38 6.57 -2.30 -0.02 0.37 16 19 N -0.49 -4.35 4.72 -167.63 -0.79 -5.15 16 20 C 0.12 1.09 4.64 -83.49 -0.39 0.71 16 21 C 0.02 0.17 9.19 -17.14 -0.16 0.01 16 22 N -0.20 -2.29 11.48 30.70 0.35 -1.94 16 23 N -0.25 -2.84 11.52 30.48 0.35 -2.49 16 24 C 0.28 2.62 7.85 -16.99 -0.13 2.49 16 25 O -0.46 -3.43 13.11 -18.89 -0.25 -3.68 16 26 C -0.05 -0.43 6.42 -38.80 -0.25 -0.68 16 27 Cl 0.00 -0.02 28.25 -51.86 -1.46 -1.48 16 28 C 0.04 0.37 6.34 -2.83 -0.02 0.35 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 31 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.40 5.20 7.78 -40.82 -0.32 4.89 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.44 6.85 -51.93 -0.36 0.09 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.18 1.42 7.82 -52.49 -0.41 1.01 16 39 H 0.41 0.93 9.06 45.56 0.41 1.35 16 40 H 0.10 0.92 7.72 -51.93 -0.40 0.52 16 41 H 0.07 0.65 7.05 -51.93 -0.37 0.29 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -32.44 358.07 -6.84 -39.28 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.14 Total: 3.00 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.72 Total: -0.91 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.28 Total: -44.93 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.16 Total: -16.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.46 Total: -1.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.44 -6.84 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413763044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.870 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds