Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46540 * 2 1 4 4 C 1.50696 * 109.47304 * 119.99514 * 2 1 3 5 5 H 1.08002 * 119.99583 * 119.99815 * 4 2 1 6 6 C 1.37875 * 120.00424 * 300.00587 * 4 2 1 7 7 N 1.31517 * 119.99846 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00425 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47419 * 119.99674 * 8 6 4 11 11 H 1.48503 * 109.47480 * 239.99873 * 8 6 4 12 12 C 1.50700 * 109.47021 * 240.00047 * 2 1 3 13 13 O 1.21285 * 119.99766 * 239.99243 * 12 2 1 14 14 N 1.34773 * 120.00285 * 60.00042 * 12 2 1 15 15 C 1.46492 * 120.00216 * 179.97438 * 14 12 2 16 16 H 1.09000 * 110.76869 * 31.79539 * 15 14 12 17 17 C 1.55142 * 110.70751 * 268.59698 * 15 14 12 18 18 C 1.54903 * 101.65593 * 205.96168 * 17 15 14 19 19 N 1.47847 * 104.79476 * 37.07033 * 18 17 15 20 20 C 1.39325 * 110.99975 * 213.63779 * 19 18 17 21 21 C 1.39531 * 121.07832 * 60.86597 * 20 19 18 22 22 N 1.31675 * 119.85238 * 179.97438 * 21 20 19 23 23 N 1.28302 * 122.36767 * 359.97438 * 22 21 20 24 24 C 1.32430 * 122.31778 * 0.02562 * 23 22 21 25 25 O 1.35729 * 120.10062 * 179.97438 * 24 23 22 26 26 C 1.39057 * 119.79736 * 359.97438 * 24 23 22 27 27 Cl 1.73608 * 121.09104 * 180.27445 * 26 24 23 28 28 C 1.47443 * 108.56873 * 335.90377 * 19 18 17 29 29 H 1.09001 * 109.46540 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47395 * 300.00090 * 1 2 3 31 31 H 1.08997 * 109.47249 * 60.00434 * 1 2 3 32 32 H 0.96999 * 119.99921 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99693 * 359.97438 * 14 12 2 34 34 H 1.09001 * 110.98971 * 324.05405 * 17 15 14 35 35 H 1.09001 * 110.98795 * 87.83512 * 17 15 14 36 36 H 1.09004 * 110.37600 * 278.24150 * 18 17 15 37 37 H 1.09001 * 110.37524 * 155.90100 * 18 17 15 38 38 H 1.08001 * 120.07918 * 359.95046 * 21 20 19 39 39 H 0.96700 * 113.99821 * 270.02574 * 25 24 23 40 40 H 1.09000 * 109.88734 * 120.39355 * 28 19 18 41 41 H 1.09003 * 109.88908 * 241.42235 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1201 4.0079 9 1 3.1456 -2.2875 3.6038 10 1 3.1466 -0.1871 4.8165 11 1 1.1662 -1.5865 4.8161 12 6 2.0323 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1955 -0.9402 -3.6507 16 1 2.2947 -2.0099 -3.4662 17 6 3.5460 -0.3370 -4.1188 18 6 3.5297 -0.6697 -5.6316 19 7 2.1184 -0.5034 -6.0396 20 6 1.7771 -1.4126 -7.0386 21 6 1.8493 -2.7882 -6.8159 22 7 1.5204 -3.6259 -7.7771 23 7 1.1283 -3.2268 -8.9318 24 6 1.0267 -1.9429 -9.2402 25 8 0.6074 -1.5709 -10.4763 26 6 1.3509 -0.9771 -8.2937 27 17 1.2232 0.7152 -8.6597 28 6 1.2626 -0.6778 -4.8517 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.7088 1.1614 3.4844 33 1 1.1488 0.5385 -2.5435 34 1 3.5695 0.7406 -3.9563 35 1 4.3846 -0.8234 -3.6205 36 1 3.8543 -1.6969 -5.7978 37 1 4.1674 0.0240 -6.1796 38 1 2.1745 -3.1650 -5.8575 39 1 1.3223 -1.4656 -11.1190 40 1 0.6804 0.2272 -4.6781 41 1 0.5942 -1.5264 -4.9975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413763044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -34.421492 kcal Electronic energy + Delta-G solvation = -26867.690903 eV Core-core repulsion = 22808.738648 eV Total energy + Delta-G solvation = -4058.952254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.71574 -41.03644 -39.86276 -38.73436 -37.80739 -35.92588 -35.69367 -33.70462 -32.57906 -32.33248 -30.60505 -29.42335 -27.17700 -25.84116 -25.33521 -24.46256 -22.53379 -22.11388 -21.17430 -20.16974 -19.38805 -18.51607 -18.35956 -17.90151 -17.56838 -17.29375 -16.89280 -16.34787 -15.80204 -15.56744 -15.30178 -15.24617 -14.85932 -14.46980 -14.37368 -14.10638 -13.88716 -13.46457 -13.45274 -13.35872 -13.00554 -12.97340 -12.88438 -12.66904 -12.60243 -12.57224 -12.17725 -12.07866 -12.02269 -11.90931 -11.02676 -11.01161 -11.00104 -10.65263 -10.58616 -10.28520 -9.96756 -9.82678 -8.14279 -6.23966 -0.78624 -0.57819 0.68939 1.39508 1.42367 1.54828 1.89130 1.93543 2.02059 2.30218 2.41933 2.56044 2.92557 3.15791 3.17206 3.39326 3.62237 3.67730 3.92401 4.00686 4.13819 4.15373 4.23465 4.40311 4.49173 4.63590 4.72872 4.78046 4.85738 4.93687 4.97808 5.06406 5.10329 5.39269 5.52718 5.63316 5.70540 5.77609 5.96728 6.24037 6.31765 6.74884 6.88174 7.31453 7.41881 7.56626 8.91494 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.002279 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.620118 B =12283.929385 C =12635.578816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.525 4.525 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.527 3.473 13 O -0.583 6.583 14 N -0.715 5.715 15 C 0.123 3.877 16 H 0.082 0.918 17 C -0.134 4.134 18 C 0.054 3.946 19 N -0.481 5.481 20 C 0.119 3.881 21 C 0.022 3.978 22 N -0.224 5.224 23 N -0.274 5.274 24 C 0.284 3.716 25 O -0.466 6.466 26 C -0.047 4.047 27 Cl 0.005 6.995 28 C 0.049 3.951 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.412 0.588 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.196 0.804 39 H 0.430 0.570 40 H 0.108 0.892 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 1.453 -25.914 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.564 4.564 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.316 3.684 13 O -0.462 6.462 14 N -0.368 5.368 15 C 0.017 3.983 16 H 0.100 0.900 17 C -0.173 4.173 18 C -0.071 4.071 19 N -0.203 5.203 20 C 0.012 3.988 21 C -0.147 4.147 22 N -0.067 5.067 23 N -0.126 5.126 24 C 0.096 3.904 25 O -0.275 6.275 26 C -0.087 4.087 27 Cl 0.034 6.966 28 C -0.078 4.078 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.249 0.751 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.213 0.787 39 H 0.293 0.707 40 H 0.126 0.874 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.099 0.011 -26.292 26.315 hybrid contribution 0.677 0.764 1.555 1.860 sum 1.776 0.775 -24.737 24.812 Atomic orbital electron populations 1.21565 0.95148 0.99385 1.01776 1.18803 0.95245 0.96000 0.89721 0.94015 1.21327 1.31312 1.12599 0.91140 0.93310 1.25571 0.95293 0.95756 1.01398 1.69953 1.37346 1.23614 1.24163 0.85591 0.78305 0.78636 0.79642 1.20394 1.20103 1.20159 1.21441 0.77997 0.83491 0.85455 1.90517 1.39752 1.28542 1.87429 1.45894 1.54368 1.32359 1.04209 1.22115 0.94028 0.97665 0.84522 0.90005 1.23081 0.97248 1.02647 0.94359 1.23227 0.86423 1.02398 0.95082 1.61200 1.05312 1.45964 1.07859 1.20010 0.95369 0.90874 0.92554 1.25405 0.97287 0.90439 1.01553 1.72799 1.06781 1.31583 0.95575 1.73005 1.11998 1.14544 1.13034 1.20723 0.92802 0.88147 0.88773 1.84793 1.37483 1.88017 1.17241 1.22691 1.01562 0.89622 0.94863 1.98429 1.95577 1.08673 1.93876 1.23153 0.94639 1.03904 0.86079 0.95909 0.91337 0.92724 0.92695 0.75122 0.89445 0.90668 0.91392 0.87347 0.78744 0.70673 0.87379 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.87 71.98 0.64 -4.58 16 2 C 0.02 1.12 2.64 -12.29 -0.03 1.09 16 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.53 -29.50 8.37 25.60 0.21 -29.28 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -50.17 11.32 21.45 0.24 -49.93 16 8 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 9 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.53 22.03 7.15 87.66 0.63 22.66 16 13 O -0.58 -28.74 15.11 -3.04 -0.05 -28.78 16 14 N -0.71 -20.60 5.07 -436.96 -2.21 -22.82 16 15 C 0.12 2.79 3.31 46.18 0.15 2.94 16 16 H 0.08 2.17 7.55 -2.39 -0.02 2.15 16 17 C -0.13 -2.60 6.76 31.98 0.22 -2.39 16 18 C 0.05 0.76 6.57 86.77 0.57 1.33 16 19 N -0.48 -7.37 4.72 -684.27 -3.23 -10.60 16 20 C 0.12 1.94 4.64 38.57 0.18 2.12 16 21 C 0.02 0.37 9.19 85.03 0.78 1.15 16 22 N -0.22 -4.89 11.48 -56.80 -0.65 -5.54 16 23 N -0.27 -6.00 11.52 -170.22 -1.96 -7.96 16 24 C 0.28 4.93 7.85 84.80 0.67 5.60 16 25 O -0.47 -6.05 13.11 -90.52 -1.19 -7.23 16 26 C -0.05 -0.77 6.42 22.78 0.15 -0.62 16 27 Cl 0.01 0.08 28.25 -2.72 -0.08 0.00 16 28 C 0.05 0.82 6.34 86.65 0.55 1.37 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 31 H 0.05 1.84 7.56 -2.39 -0.02 1.83 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.41 9.79 7.78 -92.70 -0.72 9.06 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 0.87 6.85 -2.38 -0.02 0.85 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.20 2.74 7.82 -2.91 -0.02 2.71 16 39 H 0.43 1.07 9.06 -74.06 -0.67 0.40 16 40 H 0.11 1.67 7.72 -2.39 -0.02 1.65 16 41 H 0.07 1.22 7.05 -2.39 -0.02 1.20 16 Total: -1.00 -70.62 358.07 -2.23 -72.85 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -0.28 Total: 10.94 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.16 Total: 2.86 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -7.82 Total: -96.85 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.23 Total: -36.02 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Total: -70.62 -2.23 -72.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413763044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.427 kcal (2) G-P(sol) polarization free energy of solvation -70.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds