Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 C 1.50698 * 109.47080 * 165.00203 * 18 17 14 20 20 N 1.32612 * 125.19268 * 90.01904 * 19 18 17 21 21 C 1.32818 * 109.76378 * 179.97438 * 20 19 18 22 22 N 1.33820 * 132.50589 * 180.02562 * 21 20 19 23 23 C 1.31353 * 120.86337 * 179.97438 * 22 21 20 24 24 C 1.40037 * 120.31580 * 359.97438 * 23 22 21 25 25 C 1.35786 * 119.23729 * 0.02562 * 24 23 22 26 26 N 1.35973 * 119.02347 * 0.02562 * 25 24 23 27 27 N 1.31183 * 125.18411 * 269.71790 * 19 18 17 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.09001 * 109.47031 * 284.99750 * 18 17 14 37 37 H 1.08991 * 109.47340 * 44.99621 * 18 17 14 38 38 H 1.08004 * 119.83690 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.38282 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.48396 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 6 0.6170 0.7948 5.4204 20 7 -0.5358 1.4503 5.4133 21 6 -0.7023 2.0786 6.5715 22 7 -1.6827 2.8565 7.0454 23 6 -1.6112 3.3706 8.2520 24 6 -0.5020 3.1111 9.0664 25 6 0.4977 2.3229 8.5941 26 7 0.3944 1.8067 7.3404 27 7 1.2190 0.9747 6.5720 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 0.3190 -0.4567 3.7178 37 1 1.7671 -0.8424 4.6781 38 1 -2.4118 3.9966 8.6177 39 1 -0.4423 3.5330 10.0589 40 1 1.3622 2.1093 9.2051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424252901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = 77.163709 kcal Electronic energy + Delta-G solvation = -27291.352995 eV Core-core repulsion = 23271.575896 eV Total energy + Delta-G solvation = -4019.777100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.28730 -39.32444 -36.70654 -36.15672 -35.46356 -35.24236 -34.73416 -32.54389 -31.62760 -31.06142 -29.05304 -27.28036 -25.55787 -25.08418 -24.99668 -24.03579 -21.49520 -20.75889 -18.96181 -18.81860 -18.50726 -17.39625 -17.05917 -16.87565 -16.66335 -16.32083 -15.74848 -15.14494 -15.01105 -14.36349 -14.07677 -13.75218 -13.51466 -13.45197 -13.18565 -13.04895 -12.96017 -12.74993 -12.43788 -12.00584 -11.72787 -11.61040 -11.48151 -11.30515 -11.20379 -10.92652 -10.75601 -10.52946 -10.45210 -10.42303 -10.22244 -10.07709 -9.99208 -9.48173 -9.22338 -9.19789 -8.40695 -7.95872 -6.02182 -4.08898 -0.04454 0.25747 1.12073 1.47341 2.11805 2.84353 2.99144 3.34060 3.38338 3.41124 3.45831 3.55073 3.79899 4.05831 4.12966 4.33786 4.44333 4.57416 4.80223 4.95633 5.14149 5.20252 5.29037 5.39426 5.57161 5.68331 5.74855 5.84660 5.89170 6.16014 6.38675 6.66570 6.85138 6.85671 6.99128 7.02553 7.09913 7.51131 7.56457 7.68410 7.84363 8.09986 8.32648 8.92919 9.56577 11.03441 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.002743 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.644157 B =10205.284086 C =10849.170548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.987 5.987 13 C 0.107 3.893 14 S 2.781 3.219 15 O -0.992 6.992 16 O -0.968 6.968 17 N -1.128 6.128 18 C 0.216 3.784 19 C 0.275 3.725 20 N -0.504 5.504 21 C 0.438 3.562 22 N -0.450 5.450 23 C 0.205 3.795 24 C -0.224 4.224 25 C 0.173 3.827 26 N -0.328 5.328 27 N -0.315 5.315 28 H 0.014 0.986 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 3.525 25.663 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.831 5.831 13 C -0.040 4.040 14 S 2.790 3.210 15 O -0.975 6.975 16 O -0.951 6.951 17 N -0.887 5.887 18 C 0.087 3.913 19 C -0.008 4.008 20 N -0.236 5.236 21 C 0.078 3.922 22 N -0.164 5.164 23 C 0.019 3.981 24 C -0.249 4.249 25 C 0.035 3.965 26 N -0.108 5.108 27 N -0.147 5.147 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.208 0.792 39 H 0.193 0.807 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.698 3.111 24.529 25.168 hybrid contribution 0.318 0.081 0.003 0.328 sum -4.381 3.192 24.533 25.124 Atomic orbital electron populations 1.22125 0.98100 0.99774 1.00882 1.18758 0.91408 0.92982 0.80321 0.92309 1.21292 1.31645 1.13011 0.90020 0.91969 1.24908 0.94988 0.95020 0.98980 1.69855 1.36491 1.22651 1.23857 0.86554 0.79309 0.79565 0.81936 1.20245 1.21267 1.20203 1.57703 1.69983 1.19790 1.35617 1.21204 1.02003 0.82042 0.98736 1.01978 0.73518 0.73219 0.72315 1.93546 1.68862 1.60547 1.74534 1.93628 1.73982 1.56030 1.71509 1.56302 1.62164 1.17601 1.52596 1.19494 0.95987 0.90338 0.85480 1.24437 0.88299 0.94641 0.93430 1.70820 1.19253 1.16379 1.17156 1.22834 0.85114 0.95493 0.88769 1.68045 1.23405 1.09731 1.15253 1.23624 0.96254 0.91477 0.86789 1.21983 0.95196 1.03498 1.04265 1.22203 1.00408 0.90990 0.82874 1.48903 1.17047 1.32171 1.12670 1.78658 1.14986 1.15393 1.05646 0.96693 0.88908 0.94726 0.92661 0.93054 0.93355 0.90730 0.75203 0.87990 0.87588 0.79190 0.80743 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 2 C 0.27 6.61 2.62 -69.08 -0.18 6.43 16 3 H 0.06 1.61 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -14.11 8.37 -34.44 -0.29 -14.39 16 5 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.99 -20.42 3.12 -115.85 -0.36 -20.78 16 13 C 0.11 1.86 9.53 59.85 0.57 2.43 16 14 S 2.78 54.91 6.09 -107.50 -0.66 54.26 16 15 O -0.99 -20.35 16.68 -57.17 -0.95 -21.30 16 16 O -0.97 -22.83 16.70 -57.17 -0.95 -23.78 16 17 N -1.13 -18.00 6.05 -11.66 -0.07 -18.07 16 18 C 0.22 3.02 6.87 -5.19 -0.04 2.99 16 19 C 0.27 4.03 7.49 -157.01 -1.18 2.86 16 20 N -0.50 -7.95 11.25 -11.80 -0.13 -8.08 16 21 C 0.44 5.89 8.99 -323.14 -2.91 2.98 16 22 N -0.45 -4.86 10.48 -13.82 -0.14 -5.00 16 23 C 0.21 1.01 11.26 -17.08 -0.19 0.81 16 24 C -0.22 -0.65 10.06 -39.79 -0.40 -1.05 16 25 C 0.17 1.01 11.32 -16.59 -0.19 0.82 16 26 N -0.33 -3.74 3.91 -13.84 -0.05 -3.79 16 27 N -0.31 -4.37 12.78 32.39 0.41 -3.95 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 30 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 34 H 0.07 1.26 6.43 -51.93 -0.33 0.92 16 35 H 0.42 6.33 8.64 -34.47 -0.30 6.03 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.11 1.34 7.75 -51.93 -0.40 0.94 16 38 H 0.19 0.09 8.06 -52.48 -0.42 -0.34 16 39 H 0.18 -0.27 8.06 -52.48 -0.42 -0.69 16 40 H 0.18 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 354.82 15.07 5.35 5.35 Total: -1.00 -38.27 354.82 -11.05 -49.32 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.53 Total: 1.56 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -4.56 Total: 2.42 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: 0.28 Total: -84.18 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.91 Total: -45.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.66 Total: 54.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.27 -11.05 -49.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424252901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.488 kcal (2) G-P(sol) polarization free energy of solvation -38.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds