Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.46503 * 119.99776 * 65.00378 * 17 14 12 19 19 C 1.50698 * 109.47080 * 165.00203 * 18 17 14 20 20 N 1.32612 * 125.19268 * 90.01904 * 19 18 17 21 21 C 1.32818 * 109.76378 * 179.97438 * 20 19 18 22 22 N 1.33820 * 132.50589 * 180.02562 * 21 20 19 23 23 C 1.31353 * 120.86337 * 179.97438 * 22 21 20 24 24 C 1.40037 * 120.31580 * 359.97438 * 23 22 21 25 25 C 1.35786 * 119.23729 * 0.02562 * 24 23 22 26 26 N 1.35973 * 119.02347 * 0.02562 * 25 24 23 27 27 N 1.31183 * 125.18411 * 269.71790 * 19 18 17 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 33 33 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 34 34 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 35 35 H 0.97000 * 120.00256 * 245.00310 * 17 14 12 36 36 H 1.09001 * 109.47031 * 284.99750 * 18 17 14 37 37 H 1.08991 * 109.47340 * 44.99621 * 18 17 14 38 38 H 1.08004 * 119.83690 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.38282 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.48396 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.1511 -0.0353 4.2817 19 6 0.6170 0.7948 5.4204 20 7 -0.5358 1.4503 5.4133 21 6 -0.7023 2.0786 6.5715 22 7 -1.6827 2.8565 7.0454 23 6 -1.6112 3.3706 8.2520 24 6 -0.5020 3.1111 9.0664 25 6 0.4977 2.3229 8.5941 26 7 0.3944 1.8067 7.3404 27 7 1.2190 0.9747 6.5720 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7093 1.1618 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6239 -2.2853 2.5002 34 1 0.6905 -2.3003 0.9847 35 1 1.9055 1.7750 3.4681 36 1 0.3190 -0.4567 3.7178 37 1 1.7671 -0.8424 4.6781 38 1 -2.4118 3.9966 8.6177 39 1 -0.4423 3.5330 10.0589 40 1 1.3622 2.1093 9.2051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424252901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = 48.075746 kcal Electronic energy + Delta-G solvation = -27292.614344 eV Core-core repulsion = 23271.575896 eV Total energy + Delta-G solvation = -4021.038448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.05605 -39.99628 -38.39264 -37.90723 -36.94763 -36.55545 -35.50571 -34.51590 -32.34364 -31.85994 -30.90400 -28.28635 -27.26595 -26.96576 -25.60702 -24.74020 -22.65050 -22.35504 -20.43999 -19.52443 -19.29416 -18.87263 -18.57362 -18.24788 -17.83598 -17.34279 -17.03872 -16.70485 -16.06982 -15.59130 -15.19607 -15.03226 -14.86797 -14.67002 -14.47236 -14.05395 -13.89784 -13.76263 -13.72988 -13.42429 -13.28562 -13.21204 -13.14635 -13.01493 -12.95773 -12.77019 -12.57663 -12.23415 -12.13228 -11.88438 -11.44877 -11.14098 -11.02161 -10.81212 -10.74333 -10.48177 -9.96266 -9.68182 -8.09448 -6.23301 -0.59657 -0.46256 -0.30324 0.81121 1.23732 1.44421 1.46610 1.53615 2.01529 2.16410 2.36321 2.44872 2.57164 2.71747 3.18771 3.27687 3.44119 3.51029 3.88798 3.99857 4.09441 4.21777 4.37870 4.52041 4.55073 4.70915 4.77861 4.86901 4.96358 5.02623 5.02803 5.07408 5.17277 5.23137 5.34909 5.61997 5.64958 5.84293 5.90360 6.15732 6.31934 6.35310 6.74228 6.84294 7.45488 8.94735 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.002743 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.644157 B =10205.284086 C =10849.170548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.993 5.993 13 C 0.097 3.903 14 S 2.803 3.197 15 O -0.998 6.998 16 O -1.011 7.011 17 N -1.118 6.118 18 C 0.213 3.787 19 C 0.262 3.738 20 N -0.553 5.553 21 C 0.420 3.580 22 N -0.495 5.495 23 C 0.214 3.786 24 C -0.184 4.184 25 C 0.144 3.856 26 N -0.332 5.332 27 N -0.337 5.337 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.239 0.761 39 H 0.234 0.766 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 3.678 28.792 29.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.836 5.836 13 C -0.048 4.048 14 S 2.812 3.188 15 O -0.982 6.982 16 O -0.995 6.995 17 N -0.879 5.879 18 C 0.085 3.915 19 C -0.021 4.021 20 N -0.287 5.287 21 C 0.060 3.940 22 N -0.212 5.212 23 C 0.032 3.968 24 C -0.208 4.208 25 C 0.009 3.991 26 N -0.111 5.111 27 N -0.170 5.170 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.255 0.745 39 H 0.250 0.750 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.494 3.268 27.729 28.456 hybrid contribution 0.470 0.197 -0.621 0.804 sum -5.024 3.465 27.108 27.786 Atomic orbital electron populations 1.21922 0.96878 1.00394 1.00386 1.18410 0.92201 0.91322 0.81169 0.95866 1.21625 1.31661 1.13084 0.91316 0.92232 1.25670 0.95232 0.95730 1.01765 1.69986 1.37343 1.23745 1.24385 0.85629 0.78424 0.79045 0.78632 1.18980 1.20831 1.20450 1.57561 1.69959 1.21167 1.34907 1.21460 1.02077 0.80035 1.01213 1.01115 0.73311 0.72330 0.72061 1.93528 1.69356 1.60784 1.74484 1.93564 1.75478 1.57553 1.72921 1.55873 1.62041 1.17905 1.52050 1.19659 0.96163 0.90225 0.85475 1.24268 0.88594 0.95420 0.93821 1.70649 1.20340 1.18223 1.19509 1.22952 0.86231 0.96032 0.88830 1.68149 1.23496 1.11307 1.18220 1.24677 0.97766 0.89484 0.84913 1.22711 0.92439 1.00062 1.05562 1.23192 1.02847 0.91648 0.81438 1.48943 1.16176 1.31991 1.14013 1.78457 1.16082 1.16679 1.05815 0.94894 0.91604 0.93445 0.92679 0.93514 0.89784 0.90121 0.74805 0.87020 0.86358 0.74477 0.74975 0.76813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.36 8.95 71.98 0.64 -5.71 16 2 C 0.27 13.80 2.62 44.25 0.12 13.92 16 3 H 0.02 1.35 6.91 -2.39 -0.02 1.33 16 4 C -0.54 -29.61 8.37 25.60 0.21 -29.39 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 8 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.99 -41.41 3.12 -520.44 -1.62 -43.04 16 13 C 0.10 3.31 9.53 127.77 1.22 4.53 16 14 S 2.80 112.55 6.09 -56.49 -0.34 112.21 16 15 O -1.00 -40.73 16.68 -128.00 -2.14 -42.87 16 16 O -1.01 -49.52 16.70 -128.00 -2.14 -51.66 16 17 N -1.12 -36.41 6.05 -190.79 -1.15 -37.57 16 18 C 0.21 6.00 6.87 85.63 0.59 6.59 16 19 C 0.26 7.89 7.49 138.68 1.04 8.93 16 20 N -0.55 -18.06 11.25 -191.25 -2.15 -20.21 16 21 C 0.42 11.28 8.99 261.60 2.35 13.63 16 22 N -0.50 -10.08 10.48 -197.64 -2.07 -12.15 16 23 C 0.21 1.27 11.26 85.20 0.96 2.23 16 24 C -0.18 -0.14 10.06 22.14 0.22 0.09 16 25 C 0.14 1.24 11.32 83.48 0.94 2.19 16 26 N -0.33 -7.29 3.91 -197.70 -0.77 -8.06 16 27 N -0.34 -9.42 12.78 -51.45 -0.66 -10.07 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 3.45 6.07 -2.39 -0.01 3.44 16 30 H 0.05 2.03 6.66 -2.39 -0.02 2.02 16 31 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.23 7.79 -2.39 -0.02 2.21 16 34 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 35 H 0.42 13.32 8.64 -96.74 -0.84 12.49 16 36 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.12 2.96 7.75 -2.39 -0.02 2.94 16 38 H 0.24 -1.10 8.06 -2.91 -0.02 -1.12 16 39 H 0.23 -2.51 8.06 -2.91 -0.02 -2.54 16 40 H 0.22 0.29 8.06 -2.91 -0.02 0.26 16 Total: -1.00 -88.52 354.82 -1.77 -90.29 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.26 Total: 11.24 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 8.75 Total: 18.32 kcal Atomic # 7 Polarization: -175.48 SS G_CDS: -8.19 Total: -183.67 kcal Atomic # 8 Polarization: -90.26 SS G_CDS: -4.27 Total: -94.53 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 112.55 SS G_CDS: -0.34 Total: 112.21 kcal Total: -88.52 -1.77 -90.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424252901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.367 kcal (2) G-P(sol) polarization free energy of solvation -88.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds