Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 N 1.32609 * 125.19008 * 90.02168 * 19 18 17 21 21 C 1.32818 * 109.75835 * 179.97438 * 20 19 18 22 22 N 1.33819 * 132.50377 * 180.02562 * 21 20 19 23 23 C 1.31349 * 120.86628 * 179.97438 * 22 21 20 24 24 C 1.40042 * 120.31130 * 0.02562 * 23 22 21 25 25 C 1.35777 * 119.24248 * 359.97438 * 24 23 22 26 26 N 1.35979 * 119.01762 * 0.02562 * 25 24 23 27 27 N 1.31186 * 125.18098 * 269.71280 * 19 18 17 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 33 33 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 34 34 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 35 35 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 36 36 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 37 37 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 38 38 H 1.08003 * 119.84657 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.37828 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.48756 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 7 7.3222 -1.3280 -0.6011 21 6 8.6196 -1.2172 -0.8629 22 7 9.7000 -1.1680 -0.0748 23 6 10.9037 -1.0541 -0.5879 24 6 11.0765 -0.9814 -1.9757 25 6 9.9862 -1.0304 -2.7833 26 7 8.7537 -1.1486 -2.2212 27 7 7.4593 -1.2315 -2.7506 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 0.7376 -2.1442 -1.9996 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4711 35 1 5.0733 0.6551 -1.5281 36 1 4.7540 -2.0247 -1.0019 37 1 4.8736 -1.9405 -2.7759 38 1 11.7643 -1.0156 0.0636 39 1 12.0659 -0.8881 -2.3988 40 1 10.0962 -0.9764 -3.8564 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424252913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 47.412425 kcal Electronic energy + Delta-G solvation = -27512.758343 eV Core-core repulsion = 23491.691131 eV Total energy + Delta-G solvation = -4021.067212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.06151 -40.00175 -38.39768 -37.89549 -36.96225 -36.53529 -35.51048 -34.49511 -32.34364 -31.86635 -30.91397 -28.28058 -27.21974 -26.97135 -25.60943 -24.74533 -22.65570 -22.36668 -20.50407 -19.53124 -19.28933 -18.80820 -18.45237 -18.28864 -17.85153 -17.40798 -17.04425 -16.70678 -16.04713 -15.59496 -15.17818 -14.99741 -14.90924 -14.57452 -14.47763 -14.06679 -13.88489 -13.76166 -13.71774 -13.46869 -13.28717 -13.24394 -13.16169 -13.01285 -12.97790 -12.71662 -12.64461 -12.21056 -12.10910 -11.89560 -11.44024 -11.18695 -11.02222 -10.81097 -10.69265 -10.47443 -9.97143 -9.67526 -8.07769 -6.21401 -0.58416 -0.45834 -0.29276 0.80805 1.23050 1.45089 1.48069 1.57428 1.99124 2.16731 2.35928 2.47427 2.55558 2.70880 3.21201 3.27879 3.44031 3.50386 3.88030 4.01315 4.09703 4.23439 4.37070 4.52699 4.56912 4.73723 4.77338 4.84205 4.96459 5.00096 5.02100 5.05509 5.17793 5.30307 5.34916 5.60842 5.65350 5.82105 5.90470 6.12985 6.30817 6.35082 6.74883 6.87946 7.48123 8.96883 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.003753 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.933597 B = 7458.014553 C = 9216.149405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.528 4.528 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.289 1.289 12 N -0.993 5.993 13 C 0.094 3.906 14 S 2.805 3.195 15 O -0.996 6.996 16 O -1.012 7.012 17 N -1.117 6.117 18 C 0.215 3.785 19 C 0.262 3.738 20 N -0.556 5.556 21 C 0.419 3.581 22 N -0.497 5.497 23 C 0.213 3.787 24 C -0.184 4.184 25 C 0.144 3.856 26 N -0.331 5.331 27 N -0.334 5.334 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.239 0.761 39 H 0.235 0.765 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.434 -6.847 -10.906 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.567 4.567 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.197 1.197 11 H -0.215 1.215 12 N -0.836 5.836 13 C -0.051 4.051 14 S 2.814 3.186 15 O -0.979 6.979 16 O -0.996 6.996 17 N -0.878 5.878 18 C 0.087 3.913 19 C -0.021 4.021 20 N -0.290 5.290 21 C 0.059 3.941 22 N -0.214 5.214 23 C 0.031 3.969 24 C -0.207 4.207 25 C 0.009 3.991 26 N -0.111 5.111 27 N -0.168 5.168 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.250 0.750 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.255 0.745 39 H 0.251 0.749 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 22.071 -6.518 -11.132 25.565 hybrid contribution 0.545 0.160 0.830 1.006 sum 22.617 -6.359 -10.302 25.653 Atomic orbital electron populations 1.21928 0.97547 1.00248 0.99994 1.18405 0.92139 0.91330 0.81266 0.95840 1.21654 1.31274 1.13101 0.90672 0.91197 1.25633 0.95241 0.95604 1.01711 1.70014 1.37598 1.23936 1.24205 0.85609 0.78815 0.78301 0.79199 1.19728 1.19678 1.21541 1.57594 1.64600 1.22799 1.38575 1.21506 1.00901 0.80172 1.02566 1.01057 0.72346 0.72195 0.73025 1.93537 1.86149 1.76183 1.42051 1.93552 1.84122 1.34672 1.87289 1.55807 1.31632 1.14912 1.85401 1.19610 0.81730 0.84539 1.05449 1.24276 0.97935 0.94721 0.85132 1.70680 1.00092 1.29916 1.28323 1.22929 0.93558 0.97455 0.80152 1.68138 0.97848 1.19524 1.35874 1.24682 0.93308 0.83119 0.95828 1.22712 1.01254 1.03442 0.93337 1.23210 0.78810 0.92968 1.04086 1.48958 1.07627 1.45453 1.09061 1.78436 0.85644 1.32952 1.19757 0.93485 0.91240 0.96060 0.92810 0.92482 0.90270 0.90250 0.74974 0.87713 0.86129 0.74496 0.74860 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.68 8.97 71.98 0.65 -6.04 16 2 C 0.27 13.71 2.62 44.24 0.12 13.82 16 3 H 0.02 1.35 6.91 -2.39 -0.02 1.34 16 4 C -0.53 -27.70 7.99 25.60 0.20 -27.50 16 5 H 0.07 3.52 7.33 -2.91 -0.02 3.50 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 8 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 N -0.99 -41.15 3.12 -520.45 -1.62 -42.77 16 13 C 0.09 3.16 9.28 127.77 1.19 4.34 16 14 S 2.81 112.17 6.09 -56.49 -0.34 111.82 16 15 O -1.00 -39.63 16.68 -128.00 -2.14 -41.77 16 16 O -1.01 -48.20 16.70 -128.00 -2.14 -50.33 16 17 N -1.12 -39.11 6.05 -190.78 -1.15 -40.26 16 18 C 0.22 6.69 6.87 85.64 0.59 7.28 16 19 C 0.26 8.64 7.49 138.69 1.04 9.67 16 20 N -0.56 -20.12 11.25 -191.25 -2.15 -22.27 16 21 C 0.42 12.37 8.99 261.61 2.35 14.72 16 22 N -0.50 -11.37 10.48 -197.64 -2.07 -13.45 16 23 C 0.21 1.67 11.27 85.20 0.96 2.63 16 24 C -0.18 -0.39 10.06 22.14 0.22 -0.17 16 25 C 0.14 1.44 11.32 83.48 0.94 2.38 16 26 N -0.33 -7.90 3.91 -197.71 -0.77 -8.67 16 27 N -0.33 -9.95 12.78 -51.44 -0.66 -10.61 16 28 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 29 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 30 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.17 7.79 -2.38 -0.02 2.15 16 34 H 0.08 2.72 7.02 -2.39 -0.02 2.70 16 35 H 0.42 14.49 8.64 -96.75 -0.84 13.65 16 36 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.12 3.24 7.75 -2.39 -0.02 3.22 16 38 H 0.24 -0.67 8.06 -2.91 -0.02 -0.70 16 39 H 0.23 -2.27 8.06 -2.91 -0.02 -2.29 16 40 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 Total: -1.00 -86.71 355.50 -1.81 -88.52 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.26 Total: 13.86 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 8.71 Total: 22.56 kcal Atomic # 7 Polarization: -182.10 SS G_CDS: -8.19 Total: -190.29 kcal Atomic # 8 Polarization: -87.83 SS G_CDS: -4.27 Total: -92.10 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 112.17 SS G_CDS: -0.34 Total: 111.82 kcal Total: -86.71 -1.81 -88.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424252913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.936 kcal (2) G-P(sol) polarization free energy of solvation -86.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds