Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99773 * 2 1 4 4 C 1.53003 * 109.47161 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46963 * 64.99986 * 4 3 2 6 6 C 1.36907 * 120.00063 * 270.00139 * 5 4 3 7 7 H 1.08006 * 120.00401 * 139.57734 * 6 5 4 8 8 C 1.39017 * 120.00133 * 319.57482 * 6 5 4 9 9 N 1.31387 * 119.99775 * 161.22101 * 8 6 5 10 10 Si 1.86797 * 119.99495 * 341.22255 * 8 6 5 11 11 H 1.48498 * 109.46885 * 95.27075 * 10 8 6 12 12 H 1.48504 * 109.47036 * 215.26352 * 10 8 6 13 13 H 1.48496 * 109.47556 * 335.26842 * 10 8 6 14 14 C 1.34780 * 119.99919 * 90.00127 * 5 4 3 15 15 O 1.21619 * 119.99982 * 3.80970 * 14 5 4 16 16 C 1.47496 * 119.99808 * 183.80720 * 14 5 4 17 17 C 1.41841 * 119.99244 * 327.90480 * 16 14 5 18 18 C 1.35624 * 119.59996 * 180.27214 * 17 16 14 19 19 C 1.41056 * 119.41458 * 359.53075 * 18 17 16 20 20 N 1.32191 * 133.24730 * 180.24512 * 19 18 17 21 21 N 1.28648 * 109.57121 * 179.97438 * 20 19 18 22 22 C 1.30733 * 110.33894 * 0.02562 * 21 20 19 23 23 C 1.50694 * 126.27510 * 180.02562 * 22 21 20 24 24 F 1.39895 * 109.47120 * 119.97062 * 23 22 21 25 25 F 1.39904 * 109.47282 * 239.97430 * 23 22 21 26 26 N 1.36264 * 107.44741 * 359.97438 * 22 21 20 27 27 C 1.35853 * 133.51705 * 180.02562 * 26 22 21 28 28 H 1.09003 * 109.46440 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47197 * 299.99912 * 1 2 3 30 30 H 1.09001 * 109.47004 * 60.00086 * 1 2 3 31 31 H 1.09000 * 109.47024 * 59.99676 * 3 2 1 32 32 H 1.08997 * 109.47538 * 300.00101 * 3 2 1 33 33 H 1.09001 * 109.46596 * 304.99849 * 4 3 2 34 34 H 1.09004 * 109.46629 * 185.00243 * 4 3 2 35 35 H 0.97002 * 119.99188 * 180.02562 * 9 8 6 36 36 H 1.08004 * 120.19853 * 0.05221 * 17 16 14 37 37 H 1.07999 * 120.29123 * 179.79901 * 18 17 16 38 38 H 1.09003 * 109.47266 * 359.97438 * 23 22 21 39 39 H 1.07994 * 119.81207 * 359.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.0978 -0.7971 -1.3344 7 1 3.7802 -1.3137 -2.2281 8 6 4.6298 -1.5143 -0.2689 9 7 4.4176 -2.8076 -0.1765 10 14 5.6461 -0.6392 1.0312 11 1 4.7757 -0.2761 2.1783 12 1 6.7318 -1.5381 1.4988 13 1 6.2388 0.5923 0.4504 14 6 4.2634 1.3330 -2.3200 15 8 4.2228 2.5449 -2.2258 16 6 4.6263 0.7048 -3.6041 17 6 5.3220 -0.5311 -3.6173 18 6 5.6567 -1.0990 -4.8026 19 6 5.2979 -0.4548 -6.0051 20 7 5.4748 -0.7540 -7.2805 21 7 4.9562 0.1662 -8.0149 22 6 4.4237 1.0976 -7.2679 23 6 3.7212 2.3384 -7.7554 24 9 2.4029 2.3422 -7.2874 25 9 4.3892 3.4709 -7.2772 26 7 4.6194 0.7401 -5.9676 27 6 4.2883 1.3114 -4.7804 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1767 0.0903 35 1 4.7884 -3.3080 0.5671 36 1 5.5868 -1.0154 -2.6889 37 1 6.1893 -2.0382 -4.8256 38 1 3.7198 2.3507 -8.8453 39 1 3.7554 2.2506 -4.7666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001450849641.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -57.634950 kcal Electronic energy + Delta-G solvation = -30265.138128 eV Core-core repulsion = 25653.382582 eV Total energy + Delta-G solvation = -4611.755546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.30631 -48.31413 -44.83706 -41.30171 -39.16096 -38.43614 -36.93561 -35.36793 -34.05812 -33.07054 -31.51166 -30.92395 -27.81481 -27.34393 -27.04264 -25.92713 -24.63883 -23.91881 -23.14056 -21.41494 -19.98082 -19.30566 -18.97493 -18.77078 -18.36276 -17.98109 -17.64869 -17.53489 -17.35966 -16.90516 -16.47903 -16.12800 -16.02859 -15.81659 -15.43480 -15.18185 -15.03513 -14.66576 -14.50765 -14.42119 -13.95197 -13.78838 -13.61824 -13.53791 -13.21228 -13.11756 -13.01421 -12.68505 -12.61711 -12.48002 -12.29732 -12.01720 -11.89954 -11.71301 -11.23288 -10.83097 -10.70698 -10.49364 -9.84434 -9.37460 -8.47721 -6.10431 -0.73062 -0.29920 0.81148 1.06057 1.25528 1.38537 1.45552 1.71797 1.96274 2.19768 2.27598 2.41540 2.83029 2.87716 2.96860 3.08993 3.22667 3.31856 3.60806 3.67676 3.76130 3.90340 4.05955 4.13145 4.30143 4.34087 4.37577 4.50684 4.54707 4.59260 4.64291 4.74532 4.84917 4.90977 5.03185 5.26428 5.34545 5.48500 6.01433 6.15986 6.37024 6.87187 7.05319 7.25083 7.57755 8.62470 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.004167 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.586393 B = 6718.460509 C = 7636.247020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.058 3.942 4 C 0.090 3.910 5 N -0.441 5.441 6 C -0.333 4.333 7 H 0.091 0.909 8 C 0.049 3.951 9 N -0.874 5.874 10 Si 0.915 3.085 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.517 3.483 15 O -0.606 6.606 16 C -0.105 4.105 17 C -0.032 4.032 18 C -0.105 4.105 19 C 0.215 3.785 20 N -0.314 5.314 21 N -0.220 5.220 22 C 0.043 3.957 23 C 0.375 3.625 24 F -0.194 7.194 25 F -0.193 7.193 26 N -0.376 5.376 27 C 0.102 3.898 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.281 0.719 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.202 0.798 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 7.295 -5.055 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.020 4.020 4 C -0.033 4.033 5 N -0.159 5.159 6 C -0.460 4.460 7 H 0.109 0.891 8 C -0.159 4.159 9 N -0.509 5.509 10 Si 0.741 3.259 11 H -0.189 1.189 12 H -0.210 1.210 13 H -0.184 1.184 14 C 0.307 3.693 15 O -0.493 6.493 16 C -0.112 4.112 17 C -0.056 4.056 18 C -0.126 4.126 19 C -0.032 4.032 20 N -0.162 5.162 21 N -0.062 5.062 22 C -0.219 4.219 23 C 0.320 3.680 24 F -0.175 7.175 25 F -0.174 7.174 26 N -0.054 5.054 27 C -0.024 4.024 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.200 0.800 37 H 0.203 0.797 38 H 0.219 0.781 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.461 6.809 -6.259 9.571 hybrid contribution -0.326 0.792 2.074 2.244 sum -2.786 7.601 -4.185 9.113 Atomic orbital electron populations 1.22845 0.80568 1.03071 1.00386 1.88146 1.20466 1.27487 1.95359 1.22823 0.93005 0.85212 1.00911 1.22003 0.94322 0.99440 0.87494 1.43542 1.55758 1.06734 1.09860 1.18887 1.42304 0.79570 1.05228 0.89138 1.25676 0.96327 0.95398 0.98461 1.69781 1.40695 1.08512 1.31919 0.86307 0.79430 0.79581 0.80623 1.18906 1.21031 1.18419 1.17820 0.80902 0.85791 0.84789 1.90675 1.59147 1.14071 1.85456 1.19600 1.01934 0.96936 0.92690 1.22362 0.91034 0.91578 1.00596 1.20548 1.03566 1.02733 0.85780 1.22911 0.97183 0.86247 0.96889 1.74882 1.23258 1.20342 0.97681 1.73957 1.07600 0.98284 1.26366 1.25752 1.12568 1.04248 0.79338 1.19959 0.72426 0.75199 1.00429 1.93061 1.36703 1.96286 1.91486 1.93068 1.80659 1.52529 1.91171 1.43495 1.37113 1.18044 1.06783 1.21644 0.99977 0.99435 0.81303 0.89627 0.92545 0.94139 0.90201 0.93740 0.91037 0.88218 0.90840 0.79966 0.79690 0.78109 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -15.07 10.18 -148.98 -1.52 -16.59 16 3 C 0.06 1.97 6.28 71.98 0.45 2.42 16 4 C 0.09 3.44 4.64 86.38 0.40 3.84 16 5 N -0.44 -18.68 2.11 -639.18 -1.35 -20.03 16 6 C -0.33 -15.10 6.08 84.09 0.51 -14.59 16 7 H 0.09 4.42 6.34 -2.91 -0.02 4.40 16 8 C 0.05 2.26 5.31 84.95 0.45 2.72 16 9 N -0.87 -43.33 13.96 21.68 0.30 -43.03 16 10 Si 0.91 36.93 24.93 68.60 1.71 38.64 16 11 H -0.26 -10.23 6.72 99.48 0.67 -9.56 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 13 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 14 C 0.52 21.53 7.39 86.68 0.64 22.17 16 15 O -0.61 -26.70 16.25 -4.09 -0.07 -26.77 16 16 C -0.11 -3.93 5.48 -20.33 -0.11 -4.04 16 17 C -0.03 -1.11 7.72 22.56 0.17 -0.94 16 18 C -0.11 -3.35 10.09 22.36 0.23 -3.13 16 19 C 0.22 7.43 7.92 134.12 1.06 8.50 16 20 N -0.31 -11.21 12.29 -55.22 -0.68 -11.89 16 21 N -0.22 -7.19 12.18 -49.61 -0.60 -7.79 16 22 C 0.04 1.28 7.57 137.67 1.04 2.32 16 23 C 0.38 7.95 5.75 71.23 0.41 8.36 16 24 F -0.19 -4.62 17.32 44.97 0.78 -3.84 16 25 F -0.19 -4.57 17.32 44.97 0.78 -3.79 16 26 N -0.38 -12.54 2.94 -341.64 -1.00 -13.55 16 27 C 0.10 3.48 10.44 83.68 0.87 4.35 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.83 3.38 -2.39 -0.01 2.82 16 34 H 0.10 3.58 7.37 -2.39 -0.02 3.57 16 35 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 36 H 0.18 6.90 5.41 -2.91 -0.02 6.89 16 37 H 0.19 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.20 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.18 5.85 7.89 -2.91 -0.02 5.83 16 Total: -1.00 -60.26 341.70 6.82 -53.44 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.09 Total: 21.21 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 7.38 Total: 34.00 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -3.33 Total: -96.30 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.58 Total: -43.36 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 1.56 Total: -7.63 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 1.71 Total: 38.64 kcal Total: -60.26 6.82 -53.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450849641.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.192 kcal (2) G-P(sol) polarization free energy of solvation -60.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds