Wall clock time and date at job start Sat Apr 11 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49073 * 2 1 4 4 C 1.53093 * 109.47766 * 120.02409 * 2 1 3 5 5 C 1.53178 * 109.16506 * 177.59240 * 4 2 1 6 6 H 1.08997 * 109.54224 * 62.97587 * 5 4 2 7 7 C 1.52996 * 109.54118 * 183.15386 * 5 4 2 8 8 S 1.81411 * 109.46820 * 184.82145 * 7 5 4 9 9 O 1.42098 * 110.53840 * 68.37528 * 8 7 5 10 10 O 1.42092 * 110.54176 * 291.62721 * 8 7 5 11 11 O 1.52193 * 104.44882 * 180.02562 * 8 7 5 12 12 C 1.35676 * 114.00313 * 74.99941 * 11 8 7 13 13 C 1.39320 * 119.81590 * 89.99568 * 12 11 8 14 14 C 1.36427 * 120.18687 * 179.97438 * 13 12 11 15 15 C 1.40842 * 119.81086 * 0.03053 * 14 13 12 16 16 C 1.41209 * 120.17638 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99644 * 205.35017 * 16 15 14 18 18 C 1.39893 * 120.00307 * 25.34661 * 16 15 14 19 19 N 1.30876 * 119.99806 * 26.94966 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 206.94102 * 18 16 15 21 21 H 1.48503 * 109.46952 * 60.00591 * 20 18 16 22 22 H 1.48497 * 109.47268 * 300.00239 * 20 18 16 23 23 H 1.48500 * 109.46863 * 180.02562 * 20 18 16 24 24 C 1.40827 * 119.64291 * 0.26890 * 15 14 13 25 25 C 1.36444 * 119.80871 * 359.42487 * 24 15 14 26 26 C 1.53180 * 109.10889 * 303.06622 * 5 4 2 27 27 C 1.53108 * 109.15400 * 56.84432 * 26 5 4 28 28 O 1.42895 * 109.48286 * 239.96943 * 2 1 3 29 29 H 1.08999 * 109.47256 * 299.97867 * 1 2 3 30 30 H 1.09001 * 109.46662 * 59.97293 * 1 2 3 31 31 H 1.08996 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.52103 * 57.68663 * 4 2 1 33 33 H 1.08999 * 109.57388 * 297.53218 * 4 2 1 34 34 H 1.08996 * 109.47390 * 64.82913 * 7 5 4 35 35 H 1.08998 * 109.47642 * 304.81907 * 7 5 4 36 36 H 1.08001 * 119.90198 * 359.97438 * 13 12 11 37 37 H 1.08005 * 120.09606 * 180.02562 * 14 13 12 38 38 H 0.96999 * 120.00097 * 4.10867 * 19 18 16 39 39 H 1.07997 * 120.09753 * 179.72593 * 24 15 14 40 40 H 1.07999 * 119.90695 * 180.27867 * 25 24 15 41 41 H 1.08998 * 109.52100 * 176.83904 * 26 5 4 42 42 H 1.08996 * 109.51948 * 297.02757 * 26 5 4 43 43 H 1.08998 * 109.47665 * 182.49179 * 27 26 5 44 44 H 1.08998 * 109.41366 * 62.51533 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5710 -0.7708 1.2124 6 1 3.9689 0.2435 1.2426 7 6 4.0875 -1.5594 2.4175 8 16 5.9002 -1.4953 2.4502 9 8 6.3473 -0.1789 2.7439 10 8 6.4447 -2.2281 1.3613 11 8 6.2867 -2.3065 3.6785 12 6 6.1640 -3.6478 3.5152 13 6 7.2419 -4.3888 3.0357 14 6 7.1270 -5.7379 2.8691 15 6 5.9140 -6.3814 3.1828 16 6 5.7867 -7.7775 3.0139 17 1 4.8129 -8.2151 2.8505 18 6 6.9219 -8.5939 3.0580 19 7 7.9715 -8.2185 3.7438 20 14 6.9395 -10.2197 2.1384 21 1 6.7329 -9.9709 0.6890 22 1 5.8513 -11.0904 2.6513 23 1 8.2482 -10.8907 2.3443 24 6 4.8272 -5.6241 3.6610 25 6 4.9607 -4.2765 3.8278 26 6 4.0195 -1.4589 -0.0806 27 6 3.4307 -0.7094 -1.2788 28 8 2.0066 -0.6742 -1.1663 29 1 -0.3634 0.5135 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6442 -1.7374 1.2711 33 1 1.7147 -0.1852 2.1405 34 1 3.7620 -2.5967 2.3396 35 1 3.6920 -1.1223 3.3343 36 1 8.1711 -3.8937 2.7952 37 1 7.9637 -6.3110 2.4977 38 1 7.9415 -7.4040 4.2696 39 1 3.8924 -6.1093 3.8996 40 1 4.1298 -3.6949 4.1987 41 1 5.1078 -1.4472 -0.1409 42 1 3.6645 -2.4894 -0.0869 43 1 3.7101 -1.2204 -2.2002 44 1 3.8193 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474778366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:53 Heat of formation + Delta-G solvation = -160.247612 kcal Electronic energy + Delta-G solvation = -28206.346416 eV Core-core repulsion = 24215.229231 eV Total energy + Delta-G solvation = -3991.117186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.94423 -39.72928 -37.30255 -36.66276 -35.62890 -35.11034 -33.98119 -32.95798 -30.19557 -29.43206 -29.05349 -27.20441 -25.42979 -23.68180 -22.21197 -21.94498 -21.48959 -20.39465 -19.59627 -18.36545 -17.77300 -17.02918 -16.75722 -16.42888 -15.92465 -15.27836 -15.16845 -14.84624 -14.78422 -14.34025 -14.20749 -13.97401 -13.20310 -13.06412 -12.94159 -12.73664 -12.56820 -12.47344 -12.40029 -12.34248 -12.11510 -11.87658 -11.71288 -11.64587 -11.55721 -11.30645 -11.26953 -11.21474 -11.10169 -10.99068 -10.58743 -10.51255 -10.15648 -10.02065 -9.83051 -9.55576 -9.30610 -8.18883 -7.89704 -7.61398 -4.84584 0.63255 2.22152 2.56726 2.89154 2.98514 3.07984 3.19440 3.60690 3.74992 4.01038 4.14958 4.32011 4.40359 4.52062 4.65063 4.77508 4.97612 5.03076 5.03619 5.12968 5.20541 5.31935 5.37170 5.44935 5.53842 5.59422 5.64372 5.69364 5.80651 5.82207 5.82377 5.95872 5.98197 6.06991 6.19592 6.45138 6.57162 6.64742 6.96855 7.08865 7.26901 7.32675 7.40144 7.44669 7.75069 7.84842 8.30086 8.42255 9.61874 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.003251 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.764557 B = 8609.397630 C = 9623.578579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.058 0.942 4 C -0.138 4.138 5 C -0.073 4.073 6 H 0.081 0.919 7 C -0.652 4.652 8 S 2.566 3.434 9 O -0.963 6.963 10 O -0.954 6.954 11 O -0.639 6.639 12 C -0.115 4.115 13 C -0.034 4.034 14 C -0.215 4.215 15 C 0.099 3.901 16 C -0.478 4.478 17 H 0.088 0.912 18 C 0.033 3.967 19 N -0.764 5.764 20 Si 1.068 2.932 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.212 4.212 25 C -0.075 4.075 26 C -0.182 4.182 27 C 0.065 3.935 28 O -0.380 6.380 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.305 0.695 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 9.023 -4.633 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.076 0.924 4 C -0.176 4.176 5 C -0.092 4.092 6 H 0.099 0.901 7 C -0.776 4.776 8 S 2.666 3.334 9 O -0.961 6.961 10 O -0.952 6.952 11 O -0.599 6.599 12 C -0.160 4.160 13 C -0.055 4.055 14 C -0.235 4.235 15 C 0.095 3.905 16 C -0.505 4.505 17 H 0.106 0.894 18 C -0.192 4.192 19 N -0.385 5.385 20 Si 0.890 3.110 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.233 4.233 25 C -0.095 4.095 26 C -0.219 4.219 27 C -0.011 4.011 28 O -0.299 6.299 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.351 8.047 -5.097 12.667 hybrid contribution -1.432 1.619 0.856 2.324 sum -9.782 9.665 -4.240 14.391 Atomic orbital electron populations 1.21761 0.93011 1.03063 1.02323 1.22119 0.95115 0.95011 0.85210 0.92403 1.22261 0.94215 1.02619 0.98510 1.20846 0.97383 0.98653 0.92354 0.90102 1.30924 1.30323 1.10195 1.06174 1.07018 0.77001 0.74624 0.74786 1.93528 1.79097 1.39780 1.83744 1.93568 1.74672 1.70611 1.56386 1.85627 1.86502 1.27314 1.60429 1.17430 0.98227 0.75194 1.25138 1.20403 0.95961 0.94304 0.94794 1.20787 0.99958 0.93033 1.09679 1.17834 0.91395 0.93619 0.87680 1.20885 0.97663 0.92170 1.39800 0.89422 1.27330 0.91118 1.05666 0.95109 1.70503 1.30194 1.23254 1.14548 0.83578 0.77802 0.72838 0.76821 1.19433 1.19702 1.19428 1.20540 1.00229 0.92677 1.09827 1.20427 0.94580 0.95585 0.98946 1.22713 1.03230 1.01671 0.94302 1.22547 0.80635 0.99520 0.98438 1.87922 1.21203 1.77997 1.42800 0.91123 0.91852 0.91677 0.90331 0.90596 0.84369 0.85292 0.87635 0.86581 0.88086 0.87369 0.87767 0.88782 0.89472 0.88210 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.56 37.16 0.36 -0.86 16 2 C 0.08 0.87 3.26 -26.68 -0.09 0.78 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -1.48 4.71 -26.59 -0.13 -1.61 16 5 C -0.07 -0.93 2.27 -90.44 -0.21 -1.13 16 6 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.65 -9.08 4.90 37.16 0.18 -8.90 16 8 S 2.57 46.96 4.82 -107.50 -0.52 46.44 16 9 O -0.96 -19.53 18.09 -67.03 -1.21 -20.74 16 10 O -0.95 -19.56 14.08 -67.04 -0.94 -20.50 16 11 O -0.64 -13.00 10.03 -51.06 -0.51 -13.51 16 12 C -0.11 -2.49 4.82 -38.78 -0.19 -2.68 16 13 C -0.03 -0.78 8.97 -39.83 -0.36 -1.14 16 14 C -0.21 -5.11 7.92 -39.25 -0.31 -5.42 16 15 C 0.10 2.35 5.29 -106.81 -0.57 1.78 16 16 C -0.48 -11.15 8.96 -37.84 -0.34 -11.48 16 17 H 0.09 1.93 7.97 -52.48 -0.42 1.51 16 18 C 0.03 0.75 4.89 -17.34 -0.08 0.67 16 19 N -0.76 -18.21 12.38 55.54 0.69 -17.53 16 20 Si 1.07 19.00 30.01 -169.99 -5.10 13.90 16 21 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 22 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 23 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 24 C -0.21 -4.57 9.74 -39.25 -0.38 -4.95 16 25 C -0.07 -1.51 8.38 -39.83 -0.33 -1.84 16 26 C -0.18 -2.43 5.02 -26.58 -0.13 -2.56 16 27 C 0.07 0.75 6.84 37.21 0.25 1.01 16 28 O -0.38 -4.72 10.41 -35.23 -0.37 -5.09 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.14 1.92 6.59 -51.93 -0.34 1.58 16 35 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 36 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 37 H 0.12 2.80 6.54 -52.48 -0.34 2.45 16 38 H 0.31 7.46 6.72 -40.82 -0.27 7.18 16 39 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 40 H 0.10 1.73 7.48 -52.49 -0.39 1.33 16 41 H 0.09 1.36 5.84 -51.93 -0.30 1.06 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -28.63 363.49 -11.17 -39.80 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.37 Total: 10.08 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: -2.32 Total: -38.34 kcal Atomic # 7 Polarization: -18.21 SS G_CDS: 0.69 Total: -17.53 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -3.04 Total: -59.84 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.10 Total: 13.90 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -0.52 Total: 46.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.63 -11.17 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474778366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.447 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds