Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47827 * 2 1 4 4 C 1.53090 * 109.48996 * 239.96746 * 2 1 3 5 5 C 1.53179 * 109.16157 * 182.40124 * 4 2 1 6 6 H 1.08996 * 109.54788 * 297.02963 * 5 4 2 7 7 C 1.52996 * 109.54367 * 176.84703 * 5 4 2 8 8 S 1.81405 * 109.47261 * 175.00054 * 7 5 4 9 9 O 1.42094 * 110.54285 * 291.62891 * 8 7 5 10 10 O 1.42098 * 110.54145 * 68.37968 * 8 7 5 11 11 O 1.52200 * 104.44843 * 180.02562 * 8 7 5 12 12 C 1.35675 * 114.00176 * 75.00534 * 11 8 7 13 13 C 1.39310 * 119.81310 * 269.72149 * 12 11 8 14 14 C 1.36436 * 120.18193 * 179.75607 * 13 12 11 15 15 C 1.40835 * 119.81346 * 0.51703 * 14 13 12 16 16 C 1.41207 * 120.17866 * 179.76217 * 15 14 13 17 17 H 1.08005 * 119.99641 * 204.52892 * 16 15 14 18 18 C 1.39891 * 120.00470 * 24.52381 * 16 15 14 19 19 N 1.30876 * 119.99552 * 17.95394 * 18 16 15 20 20 Si 1.86796 * 120.00220 * 197.95353 * 18 16 15 21 21 H 1.48508 * 109.47292 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47488 * 119.99950 * 20 18 16 23 23 H 1.48503 * 109.47184 * 240.00259 * 20 18 16 24 24 C 1.40834 * 119.63712 * 359.73687 * 15 14 13 25 25 C 1.36434 * 119.81474 * 0.02562 * 24 15 14 26 26 C 1.53181 * 109.03677 * 56.98240 * 5 4 2 27 27 C 1.53095 * 109.16261 * 303.02103 * 26 5 4 28 28 O 1.42905 * 109.41525 * 57.60733 * 27 26 5 29 29 H 1.09001 * 109.47302 * 299.98236 * 1 2 3 30 30 H 1.08999 * 109.47104 * 59.97801 * 1 2 3 31 31 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.52904 * 302.30792 * 4 2 1 33 33 H 1.08997 * 109.52072 * 62.43830 * 4 2 1 34 34 H 1.08999 * 109.47593 * 295.00225 * 7 5 4 35 35 H 1.09004 * 109.47001 * 55.00546 * 7 5 4 36 36 H 1.08004 * 119.90934 * 359.97438 * 13 12 11 37 37 H 1.08010 * 120.09479 * 180.25168 * 14 13 12 38 38 H 0.97002 * 119.99381 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.09103 * 180.02562 * 24 15 14 40 40 H 1.07999 * 119.91010 * 179.97438 * 25 24 15 41 41 H 1.08991 * 109.52747 * 183.11137 * 26 5 4 42 42 H 1.09006 * 109.52107 * 62.92400 * 26 5 4 43 43 H 1.08995 * 109.47678 * 297.62419 * 27 26 5 44 44 H 1.08994 * 109.48132 * 177.58869 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0408 -0.7223 -1.2494 5 6 3.5714 -0.7706 -1.2118 6 1 3.9691 0.2437 -1.2421 7 6 4.0883 -1.5592 -2.4167 8 16 5.9007 -1.4904 -2.4521 9 8 6.3440 -0.1732 -2.7479 10 8 6.4487 -2.2206 -1.3632 11 8 6.2876 -2.3010 -3.6808 12 6 6.0673 -1.6604 -4.8563 13 6 4.8421 -1.8028 -5.5038 14 6 4.6107 -1.1581 -6.6837 15 6 5.6186 -0.3556 -7.2525 16 6 5.3893 0.3111 -8.4759 17 1 6.2226 0.5854 -9.1059 18 6 4.0828 0.6164 -8.8721 19 7 3.1148 0.6150 -7.9913 20 14 3.7199 1.0259 -10.6581 21 1 4.9767 0.9595 -11.4465 22 1 2.7422 0.0490 -11.2012 23 1 3.1525 2.3954 -10.7465 24 6 6.8563 -0.2212 -6.5940 25 6 7.0698 -0.8688 -5.4123 26 6 4.0179 -1.4596 0.0813 27 6 3.4307 -0.7089 1.2794 28 8 2.0065 -0.6741 1.1665 29 1 -0.3634 0.5136 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6448 -1.7375 -1.2708 33 1 1.7142 -0.1851 -2.1398 34 1 3.7656 -2.5973 -2.3372 35 1 3.6903 -1.1242 -3.3335 36 1 4.0719 -2.4226 -5.0687 37 1 3.6588 -1.2663 -7.1825 38 1 2.2090 0.8270 -8.2659 39 1 7.6342 0.3927 -7.0234 40 1 8.0185 -0.7672 -4.9063 41 1 5.1060 -1.4492 0.1427 42 1 3.6617 -2.4899 0.0869 43 1 3.8190 0.3094 1.2960 44 1 3.7099 -1.2197 2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474778368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -154.588384 kcal Electronic energy + Delta-G solvation = -28157.784152 eV Core-core repulsion = 24166.912368 eV Total energy + Delta-G solvation = -3990.871783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.86928 -39.65546 -37.05215 -36.57797 -35.53995 -35.04624 -33.83174 -32.90110 -30.12655 -29.56279 -29.04096 -27.11968 -25.55075 -23.64488 -22.10475 -21.92294 -21.30880 -20.31920 -19.50189 -17.85422 -17.62433 -16.86505 -16.66454 -16.34118 -16.00740 -15.64911 -15.16837 -14.70185 -14.53782 -14.48870 -14.10683 -13.92681 -13.14273 -12.99920 -12.69908 -12.58280 -12.48509 -12.43817 -12.27868 -12.15272 -12.10577 -11.88260 -11.66291 -11.55608 -11.43469 -11.31792 -11.25747 -11.16013 -11.08312 -10.97850 -10.74488 -10.44994 -10.19701 -10.09243 -9.71218 -9.50274 -9.45858 -7.98527 -7.69714 -7.20345 -4.74998 0.72044 2.27755 2.75208 2.83019 2.87668 2.92987 3.06407 3.63522 3.64474 4.09426 4.19921 4.40511 4.48769 4.58996 4.71781 4.82135 5.05054 5.09286 5.16957 5.25908 5.32294 5.39333 5.41812 5.53382 5.57858 5.69842 5.72559 5.82035 5.87930 5.94145 5.98646 6.02740 6.03713 6.08815 6.20489 6.61039 6.64697 6.79855 6.87386 7.12050 7.18412 7.51420 7.54776 7.64631 7.83284 8.18343 8.43395 8.51726 9.72074 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.003476 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.630562 B = 8052.274125 C = 9804.581810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.060 0.940 4 C -0.137 4.137 5 C -0.074 4.074 6 H 0.084 0.916 7 C -0.651 4.651 8 S 2.567 3.433 9 O -0.958 6.958 10 O -0.961 6.961 11 O -0.640 6.640 12 C -0.104 4.104 13 C -0.098 4.098 14 C -0.156 4.156 15 C 0.120 3.880 16 C -0.428 4.428 17 H 0.090 0.910 18 C 0.071 3.929 19 N -0.769 5.769 20 Si 0.917 3.083 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.270 1.270 24 C -0.217 4.217 25 C -0.042 4.042 26 C -0.181 4.181 27 C 0.065 3.935 28 O -0.382 6.382 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.289 0.711 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -0.906 8.451 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.078 0.922 4 C -0.176 4.176 5 C -0.093 4.093 6 H 0.103 0.897 7 C -0.775 4.775 8 S 2.666 3.334 9 O -0.956 6.956 10 O -0.959 6.959 11 O -0.600 6.600 12 C -0.149 4.149 13 C -0.118 4.118 14 C -0.176 4.176 15 C 0.116 3.884 16 C -0.457 4.457 17 H 0.108 0.892 18 C -0.150 4.150 19 N -0.392 5.392 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.193 1.193 23 H -0.195 1.195 24 C -0.237 4.237 25 C -0.063 4.063 26 C -0.218 4.218 27 C -0.012 4.012 28 O -0.301 6.301 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.133 -1.009 8.949 10.366 hybrid contribution -0.758 0.147 -0.882 1.172 sum -5.890 -0.862 8.067 10.025 Atomic orbital electron populations 1.21760 0.92980 1.02930 1.02448 1.22147 0.95127 0.95178 0.85048 0.92214 1.22252 0.94129 1.02436 0.98753 1.20848 0.97502 0.99032 0.91921 0.89727 1.30911 1.30194 1.09321 1.07069 1.06951 0.77006 0.74423 0.75001 1.93583 1.77986 1.41797 1.82248 1.93510 1.75974 1.72602 1.53838 1.85640 1.84956 1.60986 1.28441 1.17571 0.98583 1.11243 0.87515 1.20531 0.94131 0.99886 0.97283 1.20952 1.01205 0.99123 0.96317 1.17824 0.90734 0.88475 0.91415 1.19889 0.93181 1.29771 1.02821 0.89217 1.26118 0.95778 0.92880 1.00255 1.69825 1.02430 1.31423 1.35532 0.86098 0.79888 0.78950 0.81057 1.17935 1.19274 1.19532 1.20663 0.99660 1.06340 0.97033 1.20377 0.96475 0.93860 0.95539 1.22710 1.02971 1.01366 0.94783 1.22534 0.80834 0.99668 0.98156 1.87906 1.21056 1.78079 1.43052 0.91912 0.90916 0.91823 0.90600 0.90109 0.85303 0.84130 0.87903 0.85251 0.90025 0.87390 0.87778 0.89073 0.89891 0.92935 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.57 37.16 0.36 -0.99 16 2 C 0.08 0.93 3.26 -26.68 -0.09 0.84 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.14 -1.64 4.71 -26.59 -0.13 -1.77 16 5 C -0.07 -1.00 2.27 -90.44 -0.21 -1.21 16 6 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.65 -9.74 4.90 37.16 0.18 -9.56 16 8 S 2.57 48.38 4.83 -107.50 -0.52 47.87 16 9 O -0.96 -20.83 16.25 -67.04 -1.09 -21.91 16 10 O -0.96 -19.10 15.93 -67.03 -1.07 -20.17 16 11 O -0.64 -13.24 10.03 -51.05 -0.51 -13.75 16 12 C -0.10 -2.31 4.82 -38.78 -0.19 -2.49 16 13 C -0.10 -2.08 8.38 -39.83 -0.33 -2.42 16 14 C -0.16 -3.59 8.64 -39.25 -0.34 -3.93 16 15 C 0.12 2.87 5.57 -106.81 -0.60 2.27 16 16 C -0.43 -9.95 9.04 -37.84 -0.34 -10.30 16 17 H 0.09 1.97 7.91 -52.48 -0.41 1.56 16 18 C 0.07 1.55 5.13 -17.34 -0.09 1.46 16 19 N -0.77 -17.23 10.96 55.54 0.61 -16.62 16 20 Si 0.92 16.19 29.60 -169.99 -5.03 11.16 16 21 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 22 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 23 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 24 C -0.22 -4.96 9.74 -39.25 -0.38 -5.35 16 25 C -0.04 -0.95 8.97 -39.83 -0.36 -1.30 16 26 C -0.18 -2.35 5.02 -26.59 -0.13 -2.49 16 27 C 0.06 0.74 6.84 37.21 0.25 1.00 16 28 O -0.38 -4.78 10.41 -35.23 -0.37 -5.15 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.13 1.66 8.14 -51.92 -0.42 1.23 16 35 H 0.14 2.15 6.61 -51.92 -0.34 1.80 16 36 H 0.10 1.86 7.51 -52.48 -0.39 1.47 16 37 H 0.13 2.97 6.16 -52.48 -0.32 2.65 16 38 H 0.29 5.77 8.30 -40.82 -0.34 5.43 16 39 H 0.11 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.09 1.27 5.85 -51.93 -0.30 0.97 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -28.37 364.21 -11.28 -39.65 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.41 Total: 9.66 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: -2.38 Total: -36.23 kcal Atomic # 7 Polarization: -17.23 SS G_CDS: 0.61 Total: -16.62 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -3.04 Total: -60.98 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: 48.38 SS G_CDS: -0.52 Total: 47.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.37 -11.28 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474778368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.935 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds