Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47827 * 2 1 4 4 C 1.53090 * 109.48996 * 239.96746 * 2 1 3 5 5 C 1.53179 * 109.16157 * 182.40124 * 4 2 1 6 6 H 1.08996 * 109.54788 * 297.02963 * 5 4 2 7 7 C 1.52996 * 109.54367 * 176.84703 * 5 4 2 8 8 S 1.81405 * 109.47261 * 175.00054 * 7 5 4 9 9 O 1.42094 * 110.54285 * 291.62891 * 8 7 5 10 10 O 1.42098 * 110.54145 * 68.37968 * 8 7 5 11 11 O 1.52200 * 104.44843 * 180.02562 * 8 7 5 12 12 C 1.35675 * 114.00176 * 75.00534 * 11 8 7 13 13 C 1.39310 * 119.81310 * 269.72149 * 12 11 8 14 14 C 1.36436 * 120.18193 * 179.75607 * 13 12 11 15 15 C 1.40835 * 119.81346 * 0.51703 * 14 13 12 16 16 C 1.41207 * 120.17866 * 179.76217 * 15 14 13 17 17 H 1.08005 * 119.99641 * 204.52892 * 16 15 14 18 18 C 1.39891 * 120.00470 * 24.52381 * 16 15 14 19 19 N 1.30876 * 119.99552 * 17.95394 * 18 16 15 20 20 Si 1.86796 * 120.00220 * 197.95353 * 18 16 15 21 21 H 1.48508 * 109.47292 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47488 * 119.99950 * 20 18 16 23 23 H 1.48503 * 109.47184 * 240.00259 * 20 18 16 24 24 C 1.40834 * 119.63712 * 359.73687 * 15 14 13 25 25 C 1.36434 * 119.81474 * 0.02562 * 24 15 14 26 26 C 1.53181 * 109.03677 * 56.98240 * 5 4 2 27 27 C 1.53095 * 109.16261 * 303.02103 * 26 5 4 28 28 O 1.42905 * 109.41525 * 57.60733 * 27 26 5 29 29 H 1.09001 * 109.47302 * 299.98236 * 1 2 3 30 30 H 1.08999 * 109.47104 * 59.97801 * 1 2 3 31 31 H 1.09001 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.52904 * 302.30792 * 4 2 1 33 33 H 1.08997 * 109.52072 * 62.43830 * 4 2 1 34 34 H 1.08999 * 109.47593 * 295.00225 * 7 5 4 35 35 H 1.09004 * 109.47001 * 55.00546 * 7 5 4 36 36 H 1.08004 * 119.90934 * 359.97438 * 13 12 11 37 37 H 1.08010 * 120.09479 * 180.25168 * 14 13 12 38 38 H 0.97002 * 119.99381 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.09103 * 180.02562 * 24 15 14 40 40 H 1.07999 * 119.91010 * 179.97438 * 25 24 15 41 41 H 1.08991 * 109.52747 * 183.11137 * 26 5 4 42 42 H 1.09006 * 109.52107 * 62.92400 * 26 5 4 43 43 H 1.08995 * 109.47678 * 297.62419 * 27 26 5 44 44 H 1.08994 * 109.48132 * 177.58869 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0408 -0.7223 -1.2494 5 6 3.5714 -0.7706 -1.2118 6 1 3.9691 0.2437 -1.2421 7 6 4.0883 -1.5592 -2.4167 8 16 5.9007 -1.4904 -2.4521 9 8 6.3440 -0.1732 -2.7479 10 8 6.4487 -2.2206 -1.3632 11 8 6.2876 -2.3010 -3.6808 12 6 6.0673 -1.6604 -4.8563 13 6 4.8421 -1.8028 -5.5038 14 6 4.6107 -1.1581 -6.6837 15 6 5.6186 -0.3556 -7.2525 16 6 5.3893 0.3111 -8.4759 17 1 6.2226 0.5854 -9.1059 18 6 4.0828 0.6164 -8.8721 19 7 3.1148 0.6150 -7.9913 20 14 3.7199 1.0259 -10.6581 21 1 4.9767 0.9595 -11.4465 22 1 2.7422 0.0490 -11.2012 23 1 3.1525 2.3954 -10.7465 24 6 6.8563 -0.2212 -6.5940 25 6 7.0698 -0.8688 -5.4123 26 6 4.0179 -1.4596 0.0813 27 6 3.4307 -0.7089 1.2794 28 8 2.0065 -0.6741 1.1665 29 1 -0.3634 0.5136 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6448 -1.7375 -1.2708 33 1 1.7142 -0.1851 -2.1398 34 1 3.7656 -2.5973 -2.3372 35 1 3.6903 -1.1242 -3.3335 36 1 4.0719 -2.4226 -5.0687 37 1 3.6588 -1.2663 -7.1825 38 1 2.2090 0.8270 -8.2659 39 1 7.6342 0.3927 -7.0234 40 1 8.0185 -0.7672 -4.9063 41 1 5.1060 -1.4492 0.1427 42 1 3.6617 -2.4899 0.0869 43 1 3.8190 0.3094 1.2960 44 1 3.7099 -1.2197 2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474778368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -170.349908 kcal Electronic energy + Delta-G solvation = -28158.467623 eV Core-core repulsion = 24166.912368 eV Total energy + Delta-G solvation = -3991.555254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50768 -40.61919 -38.75024 -38.17889 -37.12620 -36.13261 -35.50057 -33.74537 -31.82713 -31.28834 -30.13632 -28.05387 -27.26329 -24.65505 -23.67699 -23.30791 -22.66883 -21.37144 -21.06289 -19.50641 -19.23412 -18.45607 -18.12219 -17.31013 -17.28260 -16.98151 -16.37546 -16.07741 -15.96770 -15.76940 -15.43937 -15.06148 -14.72634 -14.22893 -14.20108 -14.04253 -13.84782 -13.70835 -13.56406 -13.39073 -13.26160 -13.20143 -13.14334 -13.04067 -12.82670 -12.79166 -12.63127 -12.38751 -12.30247 -12.16419 -12.02942 -11.78181 -11.45081 -11.39372 -11.18243 -11.10096 -10.48363 -9.72890 -9.44952 -8.83559 -6.50183 -0.78483 0.60623 0.98954 1.35155 1.43295 1.52599 1.58007 2.17198 2.53171 2.64427 2.80949 3.12825 3.28341 3.46615 3.54355 3.63549 3.90684 4.05648 4.14661 4.16846 4.18810 4.24934 4.30761 4.37713 4.48329 4.53863 4.63644 4.72134 4.74810 4.82276 4.88853 4.96168 4.98703 5.01232 5.05160 5.06970 5.17628 5.22683 5.30750 5.45979 5.76620 5.79420 5.90711 6.11097 6.24433 6.45417 6.71002 6.77849 8.12500 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.003476 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.630562 B = 8052.274125 C = 9804.581810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.063 0.937 4 C -0.134 4.134 5 C -0.081 4.081 6 H 0.081 0.919 7 C -0.628 4.628 8 S 2.573 3.427 9 O -0.992 6.992 10 O -0.974 6.974 11 O -0.651 6.651 12 C -0.112 4.112 13 C -0.093 4.093 14 C -0.173 4.173 15 C 0.094 3.906 16 C -0.458 4.458 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.795 5.795 20 Si 0.988 3.012 21 H -0.256 1.256 22 H -0.260 1.260 23 H -0.265 1.265 24 C -0.231 4.231 25 C -0.059 4.059 26 C -0.184 4.184 27 C 0.062 3.938 28 O -0.392 6.392 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.299 0.701 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 -1.101 8.637 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.019 3.981 3 H 0.081 0.919 4 C -0.173 4.173 5 C -0.101 4.101 6 H 0.099 0.901 7 C -0.757 4.757 8 S 2.675 3.325 9 O -0.990 6.990 10 O -0.972 6.972 11 O -0.611 6.611 12 C -0.156 4.156 13 C -0.114 4.114 14 C -0.193 4.193 15 C 0.090 3.910 16 C -0.486 4.486 17 H 0.109 0.891 18 C -0.182 4.182 19 N -0.418 5.418 20 Si 0.808 3.192 21 H -0.180 1.180 22 H -0.185 1.185 23 H -0.190 1.190 24 C -0.251 4.251 25 C -0.080 4.080 26 C -0.221 4.221 27 C -0.014 4.014 28 O -0.311 6.311 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.055 -1.203 9.111 11.586 hybrid contribution -0.160 0.170 -0.761 0.796 sum -7.215 -1.033 8.351 11.084 Atomic orbital electron populations 1.21768 0.91481 1.03241 1.03352 1.22297 0.96352 0.95092 0.84325 0.91948 1.22254 0.92402 1.03117 0.99488 1.20986 0.98973 0.98671 0.91436 0.90092 1.30698 1.25158 1.11687 1.08165 1.06354 0.78849 0.73296 0.73956 1.93551 1.79929 1.42953 1.82570 1.93499 1.77582 1.72570 1.53529 1.85536 1.85884 1.61291 1.28363 1.17673 0.98761 1.10925 0.88261 1.20780 0.94534 0.99484 0.96559 1.20994 1.01119 0.99941 0.97202 1.18165 0.91391 0.89260 0.92221 1.20144 0.94366 1.30905 1.03160 0.89063 1.26889 0.94970 0.92200 1.04104 1.69831 1.03152 1.31452 1.37357 0.85047 0.79586 0.78865 0.75714 1.17972 1.18480 1.18961 1.20835 1.00008 1.06970 0.97335 1.20609 0.97241 0.94409 0.95741 1.22739 1.02240 1.01960 0.95206 1.22637 0.80486 1.00124 0.98162 1.87904 1.21401 1.78276 1.43542 0.91393 0.89692 0.91793 0.89950 0.89555 0.82445 0.83861 0.84609 0.85499 0.88951 0.86504 0.87119 0.90373 0.89299 0.92282 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.57 71.98 0.69 -1.58 16 2 C 0.08 1.55 3.26 30.62 0.10 1.65 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.13 -2.86 4.71 30.68 0.14 -2.72 16 5 C -0.08 -2.05 2.27 -10.67 -0.02 -2.08 16 6 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 7 C -0.63 -17.51 4.90 71.98 0.35 -17.16 16 8 S 2.57 95.57 4.83 -56.49 -0.27 95.30 16 9 O -0.99 -43.53 16.25 -118.57 -1.93 -45.46 16 10 O -0.97 -38.16 15.93 -118.57 -1.89 -40.05 16 11 O -0.65 -26.64 10.03 -59.02 -0.59 -27.23 16 12 C -0.11 -4.98 4.82 22.79 0.11 -4.87 16 13 C -0.09 -3.93 8.38 22.11 0.19 -3.74 16 14 C -0.17 -8.01 8.64 22.48 0.19 -7.81 16 15 C 0.09 4.58 5.57 -21.28 -0.12 4.46 16 16 C -0.46 -21.61 9.04 23.40 0.21 -21.40 16 17 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 18 C 0.04 1.63 5.13 85.24 0.44 2.07 16 19 N -0.79 -35.33 10.96 21.82 0.24 -35.09 16 20 Si 0.99 32.48 29.60 68.60 2.03 34.51 16 21 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 22 H -0.26 -8.19 7.11 99.48 0.71 -7.49 16 23 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 24 C -0.23 -10.91 9.74 22.48 0.22 -10.69 16 25 C -0.06 -2.76 8.97 22.11 0.20 -2.56 16 26 C -0.18 -4.46 5.02 30.69 0.15 -4.31 16 27 C 0.06 1.31 6.84 72.01 0.49 1.80 16 28 O -0.39 -8.93 10.41 -148.98 -1.55 -10.48 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.14 4.06 6.61 -2.39 -0.02 4.05 16 36 H 0.14 4.63 7.51 -2.91 -0.02 4.61 16 37 H 0.13 5.86 6.16 -2.91 -0.02 5.84 16 38 H 0.30 11.70 8.30 -92.71 -0.77 10.93 16 39 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 41 H 0.08 2.10 5.85 -2.39 -0.01 2.09 16 42 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -60.84 364.21 0.38 -60.46 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 1.00 Total: 36.98 kcal Atomic # 6 Polarization: -72.28 SS G_CDS: 3.35 Total: -68.94 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.24 Total: -35.09 kcal Atomic # 8 Polarization: -117.26 SS G_CDS: -5.96 Total: -123.22 kcal Atomic # 14 Polarization: 32.48 SS G_CDS: 2.03 Total: 34.51 kcal Atomic # 16 Polarization: 95.57 SS G_CDS: -0.27 Total: 95.30 kcal Total: -60.84 0.38 -60.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474778368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.893 kcal (2) G-P(sol) polarization free energy of solvation -60.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds