Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 120.00298 * 2 1 4 4 H 1.08004 * 119.99781 * 323.60773 * 3 2 1 5 5 C 1.38819 * 120.00155 * 143.59777 * 3 2 1 6 6 N 1.31620 * 119.99578 * 160.52326 * 5 3 2 7 7 Si 1.86794 * 119.99824 * 340.52524 * 5 3 2 8 8 H 1.48506 * 109.46961 * 95.27946 * 7 5 3 9 9 H 1.48502 * 109.46981 * 215.27316 * 7 5 3 10 10 H 1.48494 * 109.47475 * 335.27638 * 7 5 3 11 11 C 1.46505 * 119.99966 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47047 * 89.99970 * 11 2 1 13 13 H 1.09008 * 110.88531 * 302.57377 * 12 11 2 14 14 C 1.55153 * 111.00651 * 178.65061 * 12 11 2 15 15 C 1.54320 * 102.94274 * 206.42036 * 14 12 11 16 16 N 1.47021 * 107.27040 * 22.19428 * 15 14 12 17 17 C 1.34775 * 125.64707 * 181.02270 * 16 15 14 18 18 O 1.21560 * 120.00318 * 184.92307 * 17 16 15 19 19 C 1.47784 * 120.00117 * 4.91545 * 17 16 15 20 20 C 1.39631 * 120.14481 * 312.21787 * 19 17 16 21 21 C 1.37899 * 119.91924 * 180.02562 * 20 19 17 22 22 C 1.38395 * 120.20191 * 359.97438 * 21 20 19 23 23 C 1.38461 * 120.29568 * 0.02562 * 22 21 20 24 24 F 1.35095 * 119.96058 * 179.97438 * 23 22 21 25 25 C 1.38388 * 120.08047 * 359.67981 * 23 22 21 26 26 Cl 1.73597 * 120.10679 * 180.29610 * 25 23 22 27 27 C 1.47417 * 108.70574 * 1.05684 * 16 15 14 28 28 H 1.09001 * 109.47061 * 265.10770 * 1 2 3 29 29 H 1.08996 * 109.47172 * 145.11271 * 1 2 3 30 30 H 1.08995 * 109.47105 * 25.10688 * 1 2 3 31 31 H 0.97001 * 119.99394 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.47107 * 209.99873 * 11 2 1 33 33 H 1.08999 * 109.47029 * 329.99804 * 11 2 1 34 34 H 1.09004 * 110.71493 * 324.78713 * 14 12 11 35 35 H 1.09006 * 110.71715 * 88.05730 * 14 12 11 36 36 H 1.08998 * 109.88750 * 262.77267 * 15 14 12 37 37 H 1.09005 * 109.87944 * 141.60514 * 15 14 12 38 38 H 1.08005 * 120.04263 * 359.97220 * 20 19 17 39 39 H 1.07998 * 119.89804 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.84952 * 180.02562 * 22 21 20 41 41 H 1.08997 * 110.37172 * 217.03551 * 27 16 15 42 42 H 1.09002 * 110.46445 * 94.75517 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7677 2.0300 -0.5550 5 6 3.3348 1.3031 0.7134 6 7 4.1827 2.2682 0.4268 7 14 3.7260 0.0913 2.0801 8 1 4.5773 -1.0012 1.5442 9 1 4.4492 0.7924 3.1713 10 1 2.4627 -0.4807 2.6112 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5155 -1.8031 -1.9925 14 6 3.2574 -3.0356 -1.4856 15 6 3.9808 -2.9575 -2.8465 16 7 4.0443 -1.5386 -3.2262 17 6 4.5840 -1.0528 -4.3616 18 8 4.6621 0.1483 -4.5322 19 6 5.0810 -1.9802 -5.3993 20 6 5.9066 -3.0497 -5.0467 21 6 6.3681 -3.9119 -6.0189 22 6 6.0152 -3.7209 -7.3434 23 6 5.1971 -2.6632 -7.7027 24 9 4.8572 -2.4829 -8.9977 25 6 4.7221 -1.7942 -6.7361 26 17 3.6901 -0.4724 -7.1848 27 6 3.4208 -0.7352 -2.1590 28 1 -0.3633 -0.0876 1.0239 29 1 -0.3633 -0.8429 -0.5878 30 1 -0.3633 0.9305 -0.4360 31 1 5.0109 2.3499 0.9251 32 1 3.1499 -1.1387 0.5133 33 1 1.6085 -2.0286 0.5130 34 1 3.9770 -3.0760 -0.6679 35 1 2.5872 -3.8947 -1.4538 36 1 3.4217 -3.5172 -3.5962 37 1 4.9888 -3.3620 -2.7542 38 1 6.1840 -3.2010 -4.0139 39 1 7.0070 -4.7388 -5.7458 40 1 6.3796 -4.4000 -8.1001 41 1 2.8689 0.1016 -2.5872 42 1 4.1775 -0.3731 -1.4630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481497028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -17.117807 kcal Electronic energy + Delta-G solvation = -27697.850515 eV Core-core repulsion = 23619.728643 eV Total energy + Delta-G solvation = -4078.121872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.26407 -40.39718 -38.75933 -37.40176 -36.63896 -35.54703 -32.33617 -31.58572 -31.06038 -30.69220 -28.95530 -26.43792 -25.92111 -24.33718 -23.09769 -22.61833 -21.12882 -20.18913 -19.69805 -17.93905 -17.13344 -17.00180 -16.78154 -16.39353 -16.04289 -15.55132 -15.37403 -15.05699 -14.69760 -14.23480 -13.99950 -13.64644 -13.47145 -13.25518 -13.07632 -12.87598 -12.69467 -12.42833 -12.28827 -12.04957 -11.87388 -11.82466 -11.72665 -11.51848 -11.09726 -11.01502 -10.91484 -10.61792 -10.35798 -10.27524 -9.76534 -9.72905 -9.49536 -9.32508 -9.04476 -8.55662 -8.31339 -6.86134 -5.96821 -3.40337 0.41323 0.60278 1.83867 2.64163 2.97856 3.23298 3.28503 3.43470 3.46972 3.77769 4.19467 4.37343 4.47988 4.51040 4.71486 4.76211 4.83811 4.99630 5.10223 5.23620 5.36726 5.39969 5.47692 5.51621 5.60054 5.69070 5.80257 5.86289 5.92472 6.10316 6.15846 6.22568 6.26649 6.34813 6.43782 6.55132 6.67399 6.69836 6.81263 6.92352 7.73258 8.04026 8.30432 8.37714 8.96784 9.70109 10.09391 11.18139 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.003347 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.441857 B = 8363.571461 C = 8710.137363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.081 0.919 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.148 3.852 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.132 4.132 15 C 0.098 3.902 16 N -0.611 5.611 17 C 0.564 3.436 18 O -0.504 6.504 19 C -0.080 4.080 20 C -0.093 4.093 21 C -0.090 4.090 22 C -0.129 4.129 23 C 0.104 3.896 24 F -0.125 7.125 25 C -0.037 4.037 26 Cl -0.022 7.022 27 C 0.132 3.868 28 H 0.006 0.994 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.087 0.913 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -18.246 -12.593 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.337 5.337 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.710 3.290 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.196 1.196 11 C 0.022 3.978 12 C -0.136 4.136 13 H 0.095 0.905 14 C -0.171 4.171 15 C -0.025 4.025 16 N -0.345 5.345 17 C 0.350 3.650 18 O -0.379 6.379 19 C -0.084 4.084 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.148 4.148 23 C 0.084 3.916 24 F -0.103 7.103 25 C -0.066 4.066 26 Cl 0.007 6.993 27 C 0.012 3.988 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.809 -17.277 -12.785 21.676 hybrid contribution 0.278 -0.574 0.488 0.803 sum 3.086 -17.851 -12.296 21.895 Atomic orbital electron populations 1.21062 0.84408 0.99126 0.97343 1.44070 1.00882 1.01921 1.86826 1.18810 1.04979 0.90261 1.25592 0.90181 1.25426 0.97138 0.96395 0.97547 1.69851 1.09431 1.33830 1.40629 0.86943 0.77875 0.80582 0.83647 1.21465 1.23106 1.19583 1.21129 0.96518 0.88103 0.92100 1.23054 0.97501 0.92778 1.00240 0.90535 1.22725 0.99480 0.99028 0.95831 1.22165 1.00243 0.82768 0.97329 1.48619 1.58074 1.08590 1.19217 1.17530 0.79054 0.87603 0.80850 1.90898 1.54580 1.14480 1.77957 1.19845 0.99727 0.96862 0.91975 1.21518 0.96097 0.92439 1.01117 1.21057 0.98967 0.99406 0.91417 1.21274 0.98293 0.97044 0.98205 1.17256 0.99476 0.96630 0.78277 1.91554 1.90671 1.94901 1.33175 1.21010 0.99189 0.93461 0.92923 1.98441 1.64137 1.44308 1.92393 1.22295 0.95533 0.93656 0.87317 0.97538 0.95562 0.93562 0.92706 0.92820 0.93603 0.90553 0.90251 0.91647 0.91648 0.83592 0.83684 0.83459 0.89464 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.43 10.70 59.85 0.64 3.07 16 2 N -0.61 -13.98 2.47 -181.12 -0.45 -14.43 16 3 C -0.27 -7.25 8.99 -15.06 -0.14 -7.39 16 4 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 5 C 0.04 0.99 5.24 -17.43 -0.09 0.90 16 6 N -0.90 -27.02 13.97 55.49 0.78 -26.25 16 7 Si 0.88 21.57 24.79 -169.99 -4.21 17.35 16 8 H -0.29 -6.65 6.71 56.52 0.38 -6.27 16 9 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.27 -6.52 7.10 56.52 0.40 -6.12 16 11 C 0.15 2.94 4.03 -4.04 -0.02 2.92 16 12 C -0.11 -1.94 3.29 -88.47 -0.29 -2.23 16 13 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 14 C -0.13 -1.69 6.42 -24.90 -0.16 -1.85 16 15 C 0.10 1.19 5.65 -3.07 -0.02 1.18 16 16 N -0.61 -10.27 3.33 -171.66 -0.57 -10.84 16 17 C 0.56 10.05 6.93 -12.36 -0.09 9.96 16 18 O -0.50 -11.20 16.08 5.31 0.09 -11.12 16 19 C -0.08 -1.10 5.41 -104.95 -0.57 -1.67 16 20 C -0.09 -0.92 8.52 -39.19 -0.33 -1.25 16 21 C -0.09 -0.65 10.03 -39.65 -0.40 -1.05 16 22 C -0.13 -1.03 10.02 -39.44 -0.40 -1.43 16 23 C 0.10 1.17 7.27 -39.44 -0.29 0.88 16 24 F -0.12 -1.46 16.83 2.25 0.04 -1.42 16 25 C -0.04 -0.51 6.34 -39.00 -0.25 -0.76 16 26 Cl -0.02 -0.35 26.79 -51.86 -1.39 -1.74 16 27 C 0.13 2.67 5.34 -2.53 -0.01 2.65 16 28 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.05 1.18 2.84 -51.93 -0.15 1.04 16 33 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.64 6.01 -51.93 -0.31 0.33 16 38 H 0.15 1.23 5.97 -52.48 -0.31 0.91 16 39 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.09 2.05 8.08 -51.93 -0.42 1.63 16 42 H 0.08 1.88 7.88 -51.93 -0.41 1.47 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -32.95 357.41 -8.13 -41.08 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.39 Total: -1.97 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.40 Total: 3.94 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.24 Total: -51.52 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.21 Total: 17.35 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.39 Total: -1.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.95 -8.13 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481497028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.962 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds