Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00581 * 2 1 4 4 H 1.08004 * 119.99528 * 322.18740 * 3 2 1 5 5 C 1.38806 * 120.00539 * 142.17952 * 3 2 1 6 6 N 1.31615 * 120.00607 * 157.22013 * 5 3 2 7 7 Si 1.86808 * 119.99888 * 337.23012 * 5 3 2 8 8 H 1.48497 * 109.47271 * 95.81876 * 7 5 3 9 9 H 1.48497 * 109.46944 * 215.82042 * 7 5 3 10 10 H 1.48497 * 109.46769 * 335.81447 * 7 5 3 11 11 C 1.46511 * 120.00024 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.46856 * 89.99819 * 11 2 1 13 13 H 1.08998 * 110.89108 * 57.43410 * 12 11 2 14 14 C 1.55167 * 111.03299 * 181.33408 * 12 11 2 15 15 C 1.54337 * 103.01960 * 153.39661 * 14 12 11 16 16 N 1.47021 * 107.26440 * 338.13874 * 15 14 12 17 17 C 1.34778 * 125.64437 * 178.85129 * 16 15 14 18 18 O 1.21580 * 119.99467 * 179.41961 * 17 16 15 19 19 C 1.47614 * 120.00238 * 359.69081 * 17 16 15 20 20 C 1.39894 * 120.17768 * 269.73026 * 19 17 16 21 21 F 1.35098 * 120.10398 * 0.02562 * 20 19 17 22 22 C 1.38245 * 119.79260 * 180.02562 * 20 19 17 23 23 C 1.38285 * 120.15343 * 0.02562 * 22 20 19 24 24 C 1.38349 * 120.36213 * 359.96727 * 23 22 20 25 25 C 1.38068 * 120.20541 * 359.75401 * 24 23 22 26 26 Cl 1.73605 * 120.08335 * 180.28271 * 25 24 23 27 27 C 1.47428 * 108.70599 * 358.58732 * 16 15 14 28 28 H 1.08997 * 109.47636 * 273.35732 * 1 2 3 29 29 H 1.09005 * 109.47272 * 33.36156 * 1 2 3 30 30 H 1.08999 * 109.47476 * 153.35778 * 1 2 3 31 31 H 0.96998 * 120.00273 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46452 * 329.99713 * 11 2 1 33 33 H 1.08991 * 109.46735 * 210.00500 * 11 2 1 34 34 H 1.09000 * 110.71548 * 271.95914 * 14 12 11 35 35 H 1.09002 * 110.71794 * 35.05237 * 14 12 11 36 36 H 1.08999 * 109.98725 * 218.66620 * 15 14 12 37 37 H 1.09002 * 109.77930 * 97.49568 * 15 14 12 38 38 H 1.08003 * 119.92026 * 179.97438 * 22 20 19 39 39 H 1.08001 * 119.81525 * 179.97438 * 23 22 20 40 40 H 1.08004 * 119.89338 * 180.02562 * 24 23 22 41 41 H 1.09000 * 110.36723 * 143.19648 * 27 16 15 42 42 H 1.08996 * 110.36457 * 265.40736 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7798 2.0230 -0.5735 5 6 3.3191 1.3121 0.7371 6 7 4.2036 2.2323 0.4157 7 14 3.6378 0.1757 2.1851 8 1 4.4793 -0.9653 1.7431 9 1 4.3425 0.9247 3.2564 10 1 2.3449 -0.3356 2.7069 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 1 3.0020 -0.9451 -1.9921 14 6 3.1986 -3.0696 -1.4863 15 6 2.7668 -3.6602 -2.8453 16 7 1.5090 -3.0018 -3.2273 17 6 0.8187 -3.2257 -4.3631 18 8 -0.2199 -2.6287 -4.5708 19 6 1.3206 -4.2000 -5.3520 20 6 2.1765 -3.7839 -6.3773 21 9 2.5476 -2.4879 -6.4660 22 6 2.6413 -4.7030 -7.2994 23 6 2.2616 -6.0296 -7.2099 24 6 1.4156 -6.4482 -6.1984 25 6 0.9471 -5.5440 -5.2661 26 17 -0.1086 -6.0740 -3.9939 27 6 1.1245 -2.0609 -2.1594 28 1 -0.3634 0.0602 1.0258 29 1 -0.3634 0.8584 -0.5652 30 1 -0.3634 -0.9185 -0.4608 31 1 5.0209 2.3202 0.9306 32 1 1.6083 -2.0286 0.5130 33 1 3.1498 -1.1387 0.5134 34 1 4.2776 -2.9185 -1.4541 35 1 2.8760 -3.7126 -0.6674 36 1 2.6092 -4.7347 -2.7514 37 1 3.5326 -3.4598 -3.5946 38 1 3.3019 -4.3839 -8.0921 39 1 2.6277 -6.7430 -7.9335 40 1 1.1242 -7.4862 -6.1354 41 1 0.6756 -1.1645 -2.5872 42 1 0.4317 -2.5371 -1.4656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481501830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -25.649055 kcal Electronic energy + Delta-G solvation = -27722.259912 eV Core-core repulsion = 23643.768097 eV Total energy + Delta-G solvation = -4078.491815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.29925 -40.39974 -39.02236 -37.56165 -36.88437 -35.54872 -32.44535 -31.62005 -31.07114 -30.92354 -28.99275 -26.89726 -25.62667 -24.25568 -23.27054 -22.78460 -21.10029 -20.17196 -19.83515 -18.20706 -17.45506 -17.23234 -16.75883 -16.33929 -15.90098 -15.79535 -15.30292 -15.06817 -14.95007 -14.35959 -14.01287 -13.68578 -13.62233 -13.46655 -13.24228 -12.92371 -12.70724 -12.56241 -12.43829 -12.23332 -12.02089 -11.81985 -11.78146 -11.46743 -11.43207 -11.05429 -10.85502 -10.74044 -10.31277 -10.27112 -10.08785 -9.80893 -9.53626 -9.43584 -9.22047 -8.57449 -8.52203 -6.81772 -6.00160 -3.41247 0.36098 0.50390 1.56212 2.42307 2.77488 3.00109 3.27103 3.45184 3.50916 3.70609 4.09839 4.28577 4.44584 4.50748 4.61830 4.74086 4.78429 4.87496 5.08861 5.21411 5.30142 5.36998 5.43053 5.46088 5.48573 5.54700 5.64443 5.81578 5.96632 6.02632 6.09274 6.12740 6.16857 6.27160 6.32586 6.43895 6.55910 6.71808 6.76076 6.90056 7.49144 8.03554 8.05292 8.38626 8.98402 9.70566 10.11577 11.15639 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.003245 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.916094 B = 8625.448653 C = 9012.407225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.612 5.612 3 C -0.268 4.268 4 H 0.079 0.921 5 C 0.036 3.964 6 N -0.899 5.899 7 Si 0.876 3.124 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.151 3.849 12 C -0.114 4.114 13 H 0.094 0.906 14 C -0.130 4.130 15 C 0.102 3.898 16 N -0.602 5.602 17 C 0.576 3.424 18 O -0.520 6.520 19 C -0.144 4.144 20 C 0.145 3.855 21 F -0.119 7.119 22 C -0.150 4.150 23 C -0.066 4.066 24 C -0.123 4.123 25 C 0.017 3.983 26 Cl -0.040 7.040 27 C 0.120 3.880 28 H 0.008 0.992 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -22.177 -13.901 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.335 5.335 3 C -0.397 4.397 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.540 5.540 7 Si 0.706 3.294 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.135 4.135 13 H 0.112 0.888 14 C -0.169 4.169 15 C -0.021 4.021 16 N -0.335 5.335 17 C 0.362 3.638 18 O -0.396 6.396 19 C -0.149 4.149 20 C 0.125 3.875 21 F -0.097 7.097 22 C -0.169 4.169 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.010 4.010 26 Cl -0.011 7.011 27 C -0.001 4.001 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.375 -21.729 -13.898 25.902 hybrid contribution 0.396 -0.397 0.884 1.047 sum -1.978 -22.127 -13.014 25.746 Atomic orbital electron populations 1.21159 0.84502 0.98924 0.97814 1.44046 1.00788 1.01926 1.86753 1.18801 1.05866 0.90819 1.24207 0.90394 1.25467 0.96847 0.96459 0.97688 1.69882 1.08495 1.36120 1.39531 0.86942 0.77935 0.80055 0.84457 1.21314 1.22913 1.19462 1.21106 0.96685 0.87890 0.91874 1.23110 0.94245 0.95634 1.00542 0.88802 1.22704 1.01417 0.97538 0.95193 1.22067 0.85640 0.96692 0.97732 1.48529 1.24254 1.41948 1.18741 1.17341 0.83936 0.81960 0.80571 1.90840 1.22809 1.49365 1.76590 1.19875 1.02024 0.93950 0.99028 1.17505 0.95389 0.79439 0.95163 1.91610 1.89261 1.33403 1.95459 1.21249 1.02686 0.93173 0.99799 1.21105 0.95131 0.95092 0.97053 1.21089 0.98792 1.00068 0.94217 1.20685 0.95745 0.91703 0.92912 1.98427 1.63661 1.89820 1.49188 1.22429 0.97819 0.92242 0.87582 0.97345 0.94071 0.94898 0.92731 0.94014 0.92263 0.89851 0.90649 0.91636 0.91676 0.83312 0.83456 0.83573 0.89863 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.46 10.35 59.84 0.62 3.08 16 2 N -0.61 -14.39 2.39 -181.12 -0.43 -14.82 16 3 C -0.27 -7.47 9.92 -15.06 -0.15 -7.62 16 4 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.90 -27.17 13.97 55.49 0.78 -26.39 16 7 Si 0.88 21.76 25.08 -169.99 -4.26 17.50 16 8 H -0.29 -6.72 6.68 56.52 0.38 -6.34 16 9 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.15 3.10 4.02 -4.04 -0.02 3.09 16 12 C -0.11 -2.03 3.29 -88.47 -0.29 -2.32 16 13 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 14 C -0.13 -1.79 6.42 -24.88 -0.16 -1.95 16 15 C 0.10 1.31 6.47 -3.06 -0.02 1.29 16 16 N -0.60 -9.50 3.33 -171.71 -0.57 -10.07 16 17 C 0.58 9.59 5.98 -12.43 -0.07 9.52 16 18 O -0.52 -10.53 17.36 5.30 0.09 -10.44 16 19 C -0.14 -1.89 4.82 -104.88 -0.51 -2.40 16 20 C 0.15 1.71 7.29 -38.96 -0.28 1.43 16 21 F -0.12 -1.67 16.83 2.25 0.04 -1.64 16 22 C -0.15 -1.16 10.01 -39.56 -0.40 -1.56 16 23 C -0.07 -0.38 10.03 -39.52 -0.40 -0.78 16 24 C -0.12 -0.88 9.81 -39.60 -0.39 -1.27 16 25 C 0.02 0.18 6.35 -39.08 -0.25 -0.06 16 26 Cl -0.04 -0.45 28.04 -51.86 -1.45 -1.90 16 27 C 0.12 2.08 4.92 -2.53 -0.01 2.07 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.03 0.58 6.15 -51.93 -0.32 0.26 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 32 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 33 H 0.06 1.33 3.35 -51.93 -0.17 1.16 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.94 8.04 -51.93 -0.42 0.53 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 42 H 0.07 1.10 7.22 -51.93 -0.37 0.72 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -33.49 363.03 -8.26 -41.75 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.50 Total: -2.89 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.42 Total: 3.44 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.23 Total: -51.29 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.26 Total: 17.50 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.45 Total: -1.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.49 -8.26 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481501830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.103 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds