Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.88837 * 2 1 4 4 C 1.55132 * 110.90861 * 124.08918 * 2 1 3 5 5 N 1.47421 * 104.72260 * 155.27126 * 4 2 1 6 6 C 1.34778 * 125.64706 * 155.81689 * 5 4 2 7 7 O 1.21566 * 120.00067 * 354.02158 * 6 5 4 8 8 C 1.47773 * 120.00182 * 174.29671 * 6 5 4 9 9 C 1.39637 * 120.14031 * 6.78133 * 8 6 5 10 10 C 1.37903 * 119.91545 * 179.97438 * 9 8 6 11 11 C 1.38400 * 120.20640 * 359.97438 * 10 9 8 12 12 C 1.38469 * 120.29086 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.95679 * 180.02562 * 12 11 10 14 14 C 1.38380 * 120.07872 * 359.74794 * 12 11 10 15 15 Cl 1.73606 * 120.10109 * 180.27371 * 14 12 11 16 16 C 1.47018 * 108.70709 * 335.56122 * 5 4 2 17 17 C 1.54332 * 107.26785 * 1.28105 * 16 5 4 18 18 H 1.09003 * 110.71853 * 263.65399 * 17 16 5 19 19 C 1.53003 * 110.71736 * 140.55877 * 17 16 5 20 20 N 1.46503 * 109.47113 * 66.45565 * 19 17 16 21 21 C 1.36936 * 120.00051 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00071 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00232 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00053 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47018 * 60.00147 * 25 23 21 27 27 H 1.48503 * 109.47297 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47213 * 299.99746 * 25 23 21 29 29 H 1.08999 * 109.47023 * 183.88451 * 1 2 3 30 30 H 1.09002 * 109.47169 * 303.88207 * 1 2 3 31 31 H 1.08996 * 109.47130 * 63.88072 * 1 2 3 32 32 H 1.09008 * 110.49305 * 36.43255 * 4 2 1 33 33 H 1.08999 * 110.34673 * 274.04110 * 4 2 1 34 34 H 1.07997 * 120.04612 * 359.95499 * 9 8 6 35 35 H 1.07999 * 119.89755 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.85598 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.88804 * 120.69749 * 16 5 4 38 38 H 1.08997 * 109.88330 * 241.71142 * 16 5 4 39 39 H 1.08996 * 109.46892 * 186.45426 * 19 17 16 40 40 H 1.09002 * 109.47335 * 306.45497 * 19 17 16 41 41 H 0.97002 * 119.99978 * 359.97438 * 20 19 17 42 42 H 0.96995 * 120.00266 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0837 -0.8122 1.2002 5 7 3.4271 -1.2433 0.7729 6 6 4.4477 -1.5621 1.5935 7 8 4.3356 -1.4021 2.7934 8 6 5.7052 -2.1002 1.0342 9 6 5.8937 -2.1477 -0.3486 10 6 7.0692 -2.6504 -0.8655 11 6 8.0633 -3.1076 -0.0180 12 6 7.8854 -3.0645 1.3545 13 9 8.8604 -3.5121 2.1756 14 6 6.7124 -2.5581 1.8862 15 17 6.4916 -2.4972 3.6071 16 6 3.4675 -1.2739 -0.6964 17 6 2.0861 -0.8075 -1.2024 18 1 1.4479 -1.6628 -1.4244 19 6 2.2350 0.0884 -2.4337 20 7 2.7615 -0.7000 -3.5506 21 6 2.9797 -0.1062 -4.7651 22 1 2.7633 0.9433 -4.8997 23 6 3.4781 -0.8534 -5.8235 24 7 3.7414 -2.1326 -5.6596 25 14 3.7751 -0.0435 -7.4803 26 1 4.7592 1.0576 -7.3237 27 1 4.3063 -1.0494 -8.4349 28 1 2.4966 0.5053 -7.9993 29 1 -0.3633 -1.0253 0.0696 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4524 -0.9227 32 1 1.4524 -1.6786 1.3983 33 1 2.1516 -0.1808 2.0860 34 1 5.1199 -1.7916 -1.0124 35 1 7.2149 -2.6866 -1.9350 36 1 8.9818 -3.4997 -0.4290 37 1 4.2426 -0.5993 -1.0601 38 1 3.6678 -2.2884 -1.0407 39 1 1.2619 0.4978 -2.7049 40 1 2.9224 0.9039 -2.2088 41 1 2.9562 -1.6426 -3.4296 42 1 4.0900 -2.6546 -6.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484377948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -18.330836 kcal Electronic energy + Delta-G solvation = -27349.011449 eV Core-core repulsion = 23270.836976 eV Total energy + Delta-G solvation = -4078.174473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.14049 -40.72722 -38.83211 -37.71697 -36.51358 -34.72586 -33.36638 -31.72867 -31.19511 -30.58376 -29.16693 -26.73984 -25.81597 -24.13885 -23.15336 -22.74310 -21.16150 -20.19168 -20.09584 -18.06448 -17.18023 -16.91050 -16.79620 -16.21194 -15.96173 -15.77687 -15.20902 -14.87415 -14.52548 -14.42387 -14.11958 -13.75182 -13.57261 -13.28162 -13.23467 -13.12735 -12.72242 -12.61726 -12.38053 -12.01170 -11.83177 -11.76776 -11.60667 -11.42441 -11.19427 -11.14426 -10.89410 -10.61614 -10.51980 -10.34827 -10.11895 -9.75280 -9.58537 -9.26232 -8.97348 -8.90946 -8.61255 -7.04630 -5.87076 -3.16359 0.42436 0.78806 1.93891 2.64402 2.81097 3.37685 3.43184 3.43299 3.45254 3.85366 4.21043 4.44802 4.49705 4.56311 4.65043 4.74710 4.82692 4.96350 5.17993 5.23187 5.32753 5.42854 5.46346 5.48211 5.54923 5.65820 5.69010 5.77127 5.79515 5.85083 5.89654 5.96180 6.07277 6.11382 6.17701 6.23440 6.32038 6.43185 6.60510 6.71157 7.41537 7.61037 8.07048 8.31445 9.43395 9.97933 10.32882 11.35344 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.003643 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.581749 B = 7685.036789 C =10071.202873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.570 3.430 7 O -0.520 6.520 8 C -0.101 4.101 9 C -0.117 4.117 10 C -0.088 4.088 11 C -0.120 4.120 12 C 0.093 3.907 13 F -0.127 7.127 14 C -0.029 4.029 15 Cl -0.019 7.019 16 C 0.092 3.908 17 C -0.102 4.102 18 H 0.089 0.911 19 C 0.162 3.838 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.183 0.817 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.383 0.617 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -0.830 13.763 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.009 4.009 5 N -0.343 5.343 6 C 0.359 3.641 7 O -0.397 6.397 8 C -0.105 4.105 9 C -0.135 4.135 10 C -0.106 4.106 11 C -0.139 4.139 12 C 0.073 3.927 13 F -0.106 7.106 14 C -0.058 4.058 15 Cl 0.011 6.989 16 C -0.029 4.029 17 C -0.121 4.121 18 H 0.108 0.892 19 C 0.035 3.965 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.200 0.800 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.539 -0.662 14.532 14.767 hybrid contribution 0.566 -0.100 -0.794 0.980 sum 3.105 -0.762 13.738 14.105 Atomic orbital electron populations 1.21685 0.93567 1.02160 1.02270 1.22423 0.96376 0.99488 0.93577 0.89412 1.22391 0.82076 0.98434 0.97996 1.48351 1.12223 1.66420 1.07320 1.17611 0.82280 0.78518 0.85691 1.90856 1.81545 1.53405 1.13869 1.19575 0.94572 1.03011 0.93358 1.23143 0.99833 0.96319 0.94186 1.21296 0.92104 0.95964 1.01245 1.21416 1.01447 1.00604 0.90428 1.17260 0.85762 1.01352 0.88365 1.91540 1.60292 1.86796 1.71926 1.21008 0.94348 1.02794 0.87695 1.98417 1.96836 1.96474 1.07222 1.22718 0.99419 1.02026 0.78773 1.22586 0.94651 0.99556 0.95316 0.89237 1.20670 0.97008 0.92888 0.85977 1.42344 1.77956 1.09829 1.07623 1.19158 1.36117 0.94132 0.87941 0.91221 1.24703 1.01954 0.95763 0.98158 1.69626 1.50718 1.05984 1.31781 0.86299 0.77979 0.78110 0.83967 1.21246 1.21675 1.21266 0.92370 0.92556 0.91562 0.91171 0.90264 0.80038 0.83062 0.83443 0.89406 0.89986 0.95547 0.95959 0.78326 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.31 37.16 0.35 -0.98 16 2 C -0.10 -1.10 3.10 -88.35 -0.27 -1.37 16 3 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 4 C 0.11 1.33 6.41 -2.41 -0.02 1.32 16 5 N -0.61 -8.21 3.32 -175.92 -0.58 -8.80 16 6 C 0.57 8.67 7.79 -12.36 -0.10 8.57 16 7 O -0.52 -9.00 14.24 5.31 0.08 -8.92 16 8 C -0.10 -1.43 5.87 -104.95 -0.62 -2.04 16 9 C -0.12 -1.48 8.61 -39.18 -0.34 -1.81 16 10 C -0.09 -0.98 10.03 -39.64 -0.40 -1.37 16 11 C -0.12 -1.27 10.02 -39.44 -0.40 -1.67 16 12 C 0.09 1.17 7.27 -39.44 -0.29 0.88 16 13 F -0.13 -1.62 16.83 2.25 0.04 -1.58 16 14 C -0.03 -0.42 6.36 -39.00 -0.25 -0.66 16 15 Cl -0.02 -0.28 25.71 -51.86 -1.33 -1.61 16 16 C 0.09 1.22 4.15 -3.06 -0.01 1.21 16 17 C -0.10 -1.36 2.48 -88.78 -0.22 -1.58 16 18 H 0.09 1.23 8.04 -51.93 -0.42 0.81 16 19 C 0.16 2.78 5.58 -4.04 -0.02 2.76 16 20 N -0.73 -16.24 5.45 -59.91 -0.33 -16.57 16 21 C -0.24 -6.20 9.99 -15.06 -0.15 -6.36 16 22 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -25.89 13.06 55.49 0.72 -25.16 16 25 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.06 0.53 8.07 -51.93 -0.42 0.12 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.78 7.99 -51.92 -0.41 0.37 16 33 H 0.08 0.95 7.98 -51.93 -0.41 0.53 16 34 H 0.18 2.31 2.73 -58.19 -0.16 2.16 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.09 1.22 6.36 -51.93 -0.33 0.89 16 38 H 0.08 1.08 6.73 -51.93 -0.35 0.73 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.38 8.80 7.52 -40.82 -0.31 8.50 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -29.61 360.18 -9.13 -38.75 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.31 Total: 5.90 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.82 Total: -3.46 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.19 Total: -50.53 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.33 Total: -1.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.61 -9.13 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484377948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.417 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds