Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.88837 * 2 1 4 4 C 1.55132 * 110.90861 * 124.08918 * 2 1 3 5 5 N 1.47421 * 104.72260 * 155.27126 * 4 2 1 6 6 C 1.34778 * 125.64706 * 155.81689 * 5 4 2 7 7 O 1.21566 * 120.00067 * 354.02158 * 6 5 4 8 8 C 1.47773 * 120.00182 * 174.29671 * 6 5 4 9 9 C 1.39637 * 120.14031 * 6.78133 * 8 6 5 10 10 C 1.37903 * 119.91545 * 179.97438 * 9 8 6 11 11 C 1.38400 * 120.20640 * 359.97438 * 10 9 8 12 12 C 1.38469 * 120.29086 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.95679 * 180.02562 * 12 11 10 14 14 C 1.38380 * 120.07872 * 359.74794 * 12 11 10 15 15 Cl 1.73606 * 120.10109 * 180.27371 * 14 12 11 16 16 C 1.47018 * 108.70709 * 335.56122 * 5 4 2 17 17 C 1.54332 * 107.26785 * 1.28105 * 16 5 4 18 18 H 1.09003 * 110.71853 * 263.65399 * 17 16 5 19 19 C 1.53003 * 110.71736 * 140.55877 * 17 16 5 20 20 N 1.46503 * 109.47113 * 66.45565 * 19 17 16 21 21 C 1.36936 * 120.00051 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00071 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00232 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00053 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00098 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47018 * 60.00147 * 25 23 21 27 27 H 1.48503 * 109.47297 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47213 * 299.99746 * 25 23 21 29 29 H 1.08999 * 109.47023 * 183.88451 * 1 2 3 30 30 H 1.09002 * 109.47169 * 303.88207 * 1 2 3 31 31 H 1.08996 * 109.47130 * 63.88072 * 1 2 3 32 32 H 1.09008 * 110.49305 * 36.43255 * 4 2 1 33 33 H 1.08999 * 110.34673 * 274.04110 * 4 2 1 34 34 H 1.07997 * 120.04612 * 359.95499 * 9 8 6 35 35 H 1.07999 * 119.89755 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.85598 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.88804 * 120.69749 * 16 5 4 38 38 H 1.08997 * 109.88330 * 241.71142 * 16 5 4 39 39 H 1.08996 * 109.46892 * 186.45426 * 19 17 16 40 40 H 1.09002 * 109.47335 * 306.45497 * 19 17 16 41 41 H 0.97002 * 119.99978 * 359.97438 * 20 19 17 42 42 H 0.96995 * 120.00266 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0837 -0.8122 1.2002 5 7 3.4271 -1.2433 0.7729 6 6 4.4477 -1.5621 1.5935 7 8 4.3356 -1.4021 2.7934 8 6 5.7052 -2.1002 1.0342 9 6 5.8937 -2.1477 -0.3486 10 6 7.0692 -2.6504 -0.8655 11 6 8.0633 -3.1076 -0.0180 12 6 7.8854 -3.0645 1.3545 13 9 8.8604 -3.5121 2.1756 14 6 6.7124 -2.5581 1.8862 15 17 6.4916 -2.4972 3.6071 16 6 3.4675 -1.2739 -0.6964 17 6 2.0861 -0.8075 -1.2024 18 1 1.4479 -1.6628 -1.4244 19 6 2.2350 0.0884 -2.4337 20 7 2.7615 -0.7000 -3.5506 21 6 2.9797 -0.1062 -4.7651 22 1 2.7633 0.9433 -4.8997 23 6 3.4781 -0.8534 -5.8235 24 7 3.7414 -2.1326 -5.6596 25 14 3.7751 -0.0435 -7.4803 26 1 4.7592 1.0576 -7.3237 27 1 4.3063 -1.0494 -8.4349 28 1 2.4966 0.5053 -7.9993 29 1 -0.3633 -1.0253 0.0696 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4524 -0.9227 32 1 1.4524 -1.6786 1.3983 33 1 2.1516 -0.1808 2.0860 34 1 5.1199 -1.7916 -1.0124 35 1 7.2149 -2.6866 -1.9350 36 1 8.9818 -3.4997 -0.4290 37 1 4.2426 -0.5993 -1.0601 38 1 3.6678 -2.2884 -1.0407 39 1 1.2619 0.4978 -2.7049 40 1 2.9224 0.9039 -2.2088 41 1 2.9562 -1.6426 -3.4296 42 1 4.0900 -2.6546 -6.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484377948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -34.134265 kcal Electronic energy + Delta-G solvation = -27349.696737 eV Core-core repulsion = 23270.836976 eV Total energy + Delta-G solvation = -4078.859761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.12485 -41.80934 -39.85487 -38.86547 -37.58896 -36.35867 -34.50142 -33.28680 -32.21797 -31.62953 -30.54600 -27.71257 -27.20672 -25.43157 -24.49908 -23.80917 -22.35734 -21.28092 -21.17031 -19.21797 -18.88934 -17.95010 -17.80936 -17.29206 -16.97550 -16.83135 -16.57732 -16.29955 -15.68379 -15.54344 -15.32204 -15.07616 -14.93788 -14.54145 -14.33794 -14.26177 -13.82582 -13.70684 -13.43517 -13.22188 -12.96777 -12.82444 -12.70902 -12.67783 -12.63543 -12.44300 -12.29775 -12.13505 -11.85359 -11.66068 -11.50896 -11.25099 -10.87561 -10.71461 -10.26024 -9.92142 -9.69548 -8.90557 -7.87287 -5.14369 -0.57249 -0.19651 0.88604 1.54822 1.55272 1.58304 1.61022 1.74623 2.42243 2.62282 2.85656 3.19054 3.43064 3.49762 3.51913 3.68974 3.74299 3.78501 4.04410 4.18893 4.22300 4.26804 4.41423 4.49170 4.52873 4.55662 4.72216 4.73329 4.77326 4.81323 4.87790 4.94000 5.06118 5.13109 5.15176 5.22505 5.27410 5.37601 5.50437 5.53818 5.60097 6.29470 6.35144 6.93435 7.43634 8.17187 8.41991 9.35107 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.003643 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.581749 B = 7685.036789 C =10071.202873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.089 0.911 4 C 0.111 3.889 5 N -0.607 5.607 6 C 0.565 3.435 7 O -0.548 6.548 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.085 4.085 11 C -0.103 4.103 12 C 0.086 3.914 13 F -0.129 7.129 14 C -0.045 4.045 15 Cl -0.033 7.033 16 C 0.098 3.902 17 C -0.093 4.093 18 H 0.090 0.910 19 C 0.165 3.835 20 N -0.741 5.741 21 C -0.243 4.243 22 H 0.072 0.928 23 C -0.064 4.064 24 N -0.961 5.961 25 Si 0.961 3.039 26 H -0.280 1.280 27 H -0.298 1.298 28 H -0.284 1.284 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.378 0.622 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -0.429 13.282 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.107 0.893 4 C -0.010 4.010 5 N -0.339 5.339 6 C 0.354 3.646 7 O -0.427 6.427 8 C -0.120 4.120 9 C -0.136 4.136 10 C -0.102 4.102 11 C -0.122 4.122 12 C 0.066 3.934 13 F -0.107 7.107 14 C -0.074 4.074 15 Cl -0.003 7.003 16 C -0.024 4.024 17 C -0.112 4.112 18 H 0.108 0.892 19 C 0.038 3.962 20 N -0.384 5.384 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.257 4.257 24 N -0.612 5.612 25 Si 0.791 3.209 26 H -0.207 1.207 27 H -0.224 1.224 28 H -0.210 1.210 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.197 0.803 35 H 0.187 0.813 36 H 0.198 0.802 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.210 0.790 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.527 -0.225 14.062 14.289 hybrid contribution 0.551 -0.189 -0.637 0.863 sum 3.079 -0.414 13.425 13.780 Atomic orbital electron populations 1.21675 0.92003 1.02827 1.02840 1.22367 0.97532 0.98938 0.91763 0.89282 1.22521 0.81382 0.98926 0.98191 1.48381 1.12544 1.65743 1.07248 1.17848 0.82867 0.78338 0.85516 1.90832 1.82140 1.54810 1.14902 1.19560 0.94374 1.04111 0.93952 1.23152 1.00526 0.96473 0.93457 1.21537 0.91441 0.95038 1.02227 1.21744 1.02278 0.98867 0.89269 1.17426 0.85308 1.01487 0.89145 1.91536 1.60205 1.86819 1.72168 1.21185 0.95211 1.03877 0.87134 1.98403 1.96952 1.96621 1.08351 1.22634 0.99145 1.01955 0.78630 1.22438 0.94969 0.99252 0.94588 0.89186 1.20755 0.96505 0.93038 0.85891 1.42488 1.78015 1.09929 1.07992 1.19506 1.34534 0.94291 0.89141 0.91009 1.25338 1.02954 0.96343 1.01027 1.69750 1.52240 1.07003 1.32173 0.85407 0.77793 0.77137 0.80554 1.20664 1.22402 1.21009 0.91871 0.90879 0.91925 0.90191 0.90288 0.80337 0.81259 0.80173 0.89991 0.89899 0.95357 0.95841 0.78993 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.31 71.98 0.67 -1.61 16 2 C -0.09 -1.77 3.10 -9.33 -0.03 -1.80 16 3 H 0.09 1.84 8.05 -2.39 -0.02 1.82 16 4 C 0.11 2.48 6.41 86.93 0.56 3.03 16 5 N -0.61 -15.96 3.32 -828.75 -2.76 -18.72 16 6 C 0.56 17.16 7.79 86.76 0.68 17.84 16 7 O -0.55 -19.15 14.24 -3.92 -0.06 -19.20 16 8 C -0.12 -3.24 5.87 -20.08 -0.12 -3.36 16 9 C -0.12 -2.88 8.61 22.53 0.19 -2.69 16 10 C -0.08 -1.71 10.03 22.23 0.22 -1.49 16 11 C -0.10 -1.93 10.02 22.36 0.22 -1.71 16 12 C 0.09 2.08 7.27 22.36 0.16 2.24 16 13 F -0.13 -3.14 16.83 44.97 0.76 -2.38 16 14 C -0.05 -1.27 6.36 22.64 0.14 -1.12 16 15 Cl -0.03 -0.97 25.71 -2.72 -0.07 -1.04 16 16 C 0.10 2.52 4.15 86.73 0.36 2.88 16 17 C -0.09 -2.38 2.48 -9.60 -0.02 -2.40 16 18 H 0.09 2.34 8.04 -2.39 -0.02 2.32 16 19 C 0.16 5.44 5.58 86.38 0.48 5.92 16 20 N -0.74 -32.28 5.45 -343.44 -1.87 -34.15 16 21 C -0.24 -12.21 9.99 84.03 0.84 -11.37 16 22 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 23 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 24 N -0.96 -53.20 13.06 21.65 0.28 -52.92 16 25 Si 0.96 42.84 29.55 68.60 2.03 44.87 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 27 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.65 7.99 -2.38 -0.02 1.63 16 33 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 34 H 0.18 4.44 2.73 -8.27 -0.02 4.42 16 35 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.08 2.23 6.36 -2.39 -0.02 2.22 16 38 H 0.08 2.14 6.73 -2.39 -0.02 2.12 16 39 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16 41 H 0.38 17.21 7.52 -92.71 -0.70 16.51 16 42 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -62.47 360.18 3.50 -58.97 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.36 Total: 23.07 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 4.83 Total: 1.50 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -4.34 Total: -105.78 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.76 Total: -2.38 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -62.47 3.50 -58.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484377948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.833 kcal (2) G-P(sol) polarization free energy of solvation -62.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds