Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.91612 * 2 1 4 4 C 1.55123 * 110.93503 * 124.06207 * 2 1 3 5 5 N 1.47423 * 104.94621 * 81.21503 * 4 2 1 6 6 C 1.34773 * 125.64988 * 204.04321 * 5 4 2 7 7 O 1.21562 * 119.99827 * 354.86920 * 6 5 4 8 8 C 1.47774 * 119.99973 * 174.87972 * 6 5 4 9 9 C 1.39631 * 120.14734 * 7.85591 * 8 6 5 10 10 C 1.37897 * 119.92143 * 180.02562 * 9 8 6 11 11 C 1.38397 * 120.20469 * 0.02562 * 10 9 8 12 12 C 1.38472 * 120.29177 * 0.02562 * 11 10 9 13 13 F 1.35097 * 119.95824 * 179.97438 * 12 11 10 14 14 C 1.38386 * 120.07849 * 359.67268 * 12 11 10 15 15 Cl 1.73595 * 120.10285 * 180.30045 * 14 12 11 16 16 C 1.47023 * 108.70186 * 23.99904 * 5 4 2 17 17 C 1.54321 * 107.27191 * 358.94611 * 16 5 4 18 18 H 1.09002 * 110.72506 * 96.34272 * 17 16 5 19 19 C 1.53001 * 110.71929 * 219.44078 * 17 16 5 20 20 N 1.46503 * 109.47280 * 291.15252 * 19 17 16 21 21 C 1.36935 * 120.00033 * 180.27175 * 20 19 17 22 22 H 1.07997 * 120.00326 * 359.73133 * 21 20 19 23 23 C 1.38813 * 119.99790 * 179.72743 * 21 20 19 24 24 N 1.31619 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47251 * 60.00076 * 25 23 21 27 27 H 1.48500 * 109.47035 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47029 * 299.99871 * 25 23 21 29 29 H 1.09006 * 109.47400 * 183.89452 * 1 2 3 30 30 H 1.08999 * 109.47222 * 303.89983 * 1 2 3 31 31 H 1.09003 * 109.46957 * 63.90452 * 1 2 3 32 32 H 1.09004 * 110.41762 * 322.28442 * 4 2 1 33 33 H 1.09003 * 110.30024 * 200.08397 * 4 2 1 34 34 H 1.08002 * 120.04077 * 0.02763 * 9 8 6 35 35 H 1.07991 * 119.89971 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.85809 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.88801 * 239.52407 * 16 5 4 38 38 H 1.09011 * 109.88111 * 118.35721 * 16 5 4 39 39 H 1.09000 * 109.47266 * 171.15816 * 19 17 16 40 40 H 1.08999 * 109.47268 * 51.15457 * 19 17 16 41 41 H 0.97007 * 119.99306 * 0.02562 * 20 19 17 42 42 H 0.97002 * 119.99963 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0843 -0.8115 1.2003 5 7 2.0170 -2.2200 0.7704 6 6 1.9513 -3.2888 1.5889 7 8 2.0380 -3.1391 2.7921 8 6 1.7742 -4.6426 1.0236 9 6 1.8384 -4.8399 -0.3572 10 6 1.6719 -6.1051 -0.8798 11 6 1.4407 -7.1804 -0.0398 12 6 1.3742 -6.9945 1.3308 13 9 1.1477 -8.0489 2.1444 14 6 1.5458 -5.7309 1.8684 15 17 1.4704 -5.4984 3.5870 16 6 2.0322 -2.2658 -0.6990 17 6 2.0861 -0.8079 -1.2023 18 1 3.1122 -0.5137 -1.4229 19 6 1.1965 -0.6272 -2.4338 20 7 1.7785 -1.3505 -3.5672 21 6 1.1555 -1.3283 -4.7864 22 1 0.2328 -0.7812 -4.9114 23 6 1.7100 -2.0090 -5.8616 24 7 2.8343 -2.6761 -5.7091 25 14 0.8605 -1.9782 -7.5249 26 1 0.7579 -0.5758 -8.0025 27 1 1.6485 -2.7766 -8.4980 28 1 -0.5005 -2.5582 -7.3965 29 1 -0.3634 -1.0253 0.0698 30 1 -0.3633 0.5732 0.8530 31 1 -0.3633 0.4521 -0.9229 32 1 1.4654 -0.6544 2.0837 33 1 3.1162 -0.5263 1.4053 34 1 2.0184 -4.0026 -1.0152 35 1 1.7213 -6.2572 -1.9478 36 1 1.3107 -8.1688 -0.4551 37 1 1.1270 -2.7508 -1.0643 38 1 2.9118 -2.8097 -1.0439 39 1 1.1246 0.4328 -2.6777 40 1 0.2016 -1.0201 -2.2243 41 1 2.6072 -1.8422 -3.4547 42 1 3.2216 -3.1521 -6.4603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484377949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -16.043019 kcal Electronic energy + Delta-G solvation = -27546.565961 eV Core-core repulsion = 23468.490696 eV Total energy + Delta-G solvation = -4078.075266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.14932 -40.78553 -38.91385 -37.75692 -36.52373 -34.73186 -33.20917 -31.70877 -31.09583 -30.51561 -29.08064 -26.97974 -25.76491 -24.33828 -23.15144 -22.74772 -21.60897 -20.14083 -19.43058 -18.08926 -17.17412 -16.83235 -16.79700 -16.38225 -15.97625 -15.81503 -15.24136 -14.96473 -14.55186 -14.40827 -13.98005 -13.78968 -13.52193 -13.30627 -13.26503 -12.97052 -12.82821 -12.65082 -12.29699 -11.99223 -11.86956 -11.75424 -11.61251 -11.44696 -11.19930 -11.08890 -10.88465 -10.61221 -10.43333 -10.33894 -10.09706 -9.76971 -9.59436 -9.27020 -8.96799 -8.91493 -8.60327 -7.03739 -5.86621 -3.15778 0.41713 0.77697 1.93179 2.63843 2.81698 3.37761 3.43283 3.43439 3.44438 3.84779 4.20596 4.44218 4.49124 4.55477 4.63093 4.74707 4.90598 4.94244 5.16609 5.20122 5.27969 5.44652 5.47949 5.50237 5.59622 5.66081 5.67931 5.76405 5.81588 5.83852 5.94499 6.04077 6.06173 6.08708 6.15987 6.29798 6.35874 6.42082 6.59861 6.71396 7.41833 7.61301 8.07175 8.31953 9.43809 9.98792 10.33520 11.35824 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.003598 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.299835 B = 7781.234841 C = 9768.980491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.093 0.907 4 C 0.113 3.887 5 N -0.607 5.607 6 C 0.570 3.430 7 O -0.520 6.520 8 C -0.101 4.101 9 C -0.117 4.117 10 C -0.088 4.088 11 C -0.120 4.120 12 C 0.093 3.907 13 F -0.127 7.127 14 C -0.030 4.030 15 Cl -0.019 7.019 16 C 0.093 3.907 17 C -0.103 4.103 18 H 0.089 0.911 19 C 0.162 3.838 20 N -0.734 5.734 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.182 0.818 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.383 0.617 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -3.397 13.884 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.009 4.009 5 N -0.341 5.341 6 C 0.359 3.641 7 O -0.397 6.397 8 C -0.105 4.105 9 C -0.134 4.134 10 C -0.106 4.106 11 C -0.139 4.139 12 C 0.073 3.927 13 F -0.105 7.105 14 C -0.058 4.058 15 Cl 0.011 6.989 16 C -0.028 4.028 17 C -0.122 4.122 18 H 0.107 0.893 19 C 0.034 3.966 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.199 0.801 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.216 0.784 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.142 -3.370 14.654 15.188 hybrid contribution -0.150 -0.506 -0.800 0.958 sum -2.291 -3.876 13.854 14.567 Atomic orbital electron populations 1.21788 0.94076 1.02149 1.02073 1.22404 0.96680 0.99083 0.93598 0.88877 1.22356 1.01149 0.79512 0.97849 1.48347 1.72264 1.06188 1.07277 1.17595 0.77682 0.83126 0.85740 1.90856 1.49756 1.85465 1.13592 1.19577 1.04607 0.92886 0.93395 1.23103 0.95707 1.00519 0.94101 1.21283 0.96824 0.91321 1.01219 1.21412 1.00401 1.01594 0.90502 1.17264 1.04423 0.82530 0.88507 1.91540 1.92062 1.54576 1.72367 1.21010 1.04418 0.92672 0.87749 1.98417 1.96042 1.97041 1.07433 1.22706 1.02405 0.98887 0.78836 1.22547 1.01543 0.92706 0.95404 0.89305 1.20742 0.94369 0.95867 0.85629 1.42371 1.28625 1.60459 1.06355 1.19153 1.04745 1.26318 0.87088 0.91231 1.24703 0.97462 1.00369 0.98067 1.69629 1.20067 1.37318 1.31101 0.86302 0.78583 0.77460 0.84032 1.21271 1.21681 1.21249 0.92552 0.92864 0.91320 0.90298 0.91246 0.80140 0.83102 0.83446 0.89472 0.90047 0.95677 0.95485 0.78376 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.16 37.16 0.30 -1.27 16 2 C -0.10 -1.08 3.56 -88.35 -0.31 -1.39 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.11 1.32 6.35 -2.41 -0.02 1.30 16 5 N -0.61 -8.04 3.32 -175.10 -0.58 -8.62 16 6 C 0.57 8.56 7.79 -12.36 -0.10 8.46 16 7 O -0.52 -8.93 14.32 5.31 0.08 -8.85 16 8 C -0.10 -1.40 5.87 -104.95 -0.62 -2.02 16 9 C -0.12 -1.45 8.59 -39.19 -0.34 -1.79 16 10 C -0.09 -0.96 10.03 -39.65 -0.40 -1.36 16 11 C -0.12 -1.25 10.02 -39.44 -0.40 -1.65 16 12 C 0.09 1.16 7.27 -39.44 -0.29 0.87 16 13 F -0.13 -1.60 16.83 2.25 0.04 -1.57 16 14 C -0.03 -0.41 6.36 -39.00 -0.25 -0.66 16 15 Cl -0.02 -0.27 25.71 -51.86 -1.33 -1.61 16 16 C 0.09 1.22 3.96 -3.07 -0.01 1.21 16 17 C -0.10 -1.37 2.84 -88.78 -0.25 -1.62 16 18 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.16 2.74 4.43 -4.04 -0.02 2.72 16 20 N -0.73 -16.25 5.48 -59.91 -0.33 -16.58 16 21 C -0.24 -6.19 9.99 -15.06 -0.15 -6.34 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -25.97 13.06 55.49 0.72 -25.25 16 25 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.78 6.79 -51.93 -0.35 0.42 16 32 H 0.08 0.93 8.00 -51.93 -0.42 0.52 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.18 2.26 2.77 -57.13 -0.16 2.10 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.09 1.20 6.26 -51.93 -0.32 0.87 16 38 H 0.08 1.06 6.80 -51.92 -0.35 0.71 16 39 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 40 H 0.03 0.47 6.79 -51.93 -0.35 0.11 16 41 H 0.38 8.82 7.60 -40.82 -0.31 8.51 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -29.69 356.17 -9.17 -38.86 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.18 Total: 6.08 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.93 Total: -3.88 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.18 Total: -50.45 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.33 Total: -1.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.69 -9.17 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484377949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.816 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds