Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.91612 * 2 1 4 4 C 1.55123 * 110.93503 * 124.06207 * 2 1 3 5 5 N 1.47423 * 104.94621 * 81.21503 * 4 2 1 6 6 C 1.34773 * 125.64988 * 204.04321 * 5 4 2 7 7 O 1.21562 * 119.99827 * 354.86920 * 6 5 4 8 8 C 1.47774 * 119.99973 * 174.87972 * 6 5 4 9 9 C 1.39631 * 120.14734 * 7.85591 * 8 6 5 10 10 C 1.37897 * 119.92143 * 180.02562 * 9 8 6 11 11 C 1.38397 * 120.20469 * 0.02562 * 10 9 8 12 12 C 1.38472 * 120.29177 * 0.02562 * 11 10 9 13 13 F 1.35097 * 119.95824 * 179.97438 * 12 11 10 14 14 C 1.38386 * 120.07849 * 359.67268 * 12 11 10 15 15 Cl 1.73595 * 120.10285 * 180.30045 * 14 12 11 16 16 C 1.47023 * 108.70186 * 23.99904 * 5 4 2 17 17 C 1.54321 * 107.27191 * 358.94611 * 16 5 4 18 18 H 1.09002 * 110.72506 * 96.34272 * 17 16 5 19 19 C 1.53001 * 110.71929 * 219.44078 * 17 16 5 20 20 N 1.46503 * 109.47280 * 291.15252 * 19 17 16 21 21 C 1.36935 * 120.00033 * 180.27175 * 20 19 17 22 22 H 1.07997 * 120.00326 * 359.73133 * 21 20 19 23 23 C 1.38813 * 119.99790 * 179.72743 * 21 20 19 24 24 N 1.31619 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47251 * 60.00076 * 25 23 21 27 27 H 1.48500 * 109.47035 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47029 * 299.99871 * 25 23 21 29 29 H 1.09006 * 109.47400 * 183.89452 * 1 2 3 30 30 H 1.08999 * 109.47222 * 303.89983 * 1 2 3 31 31 H 1.09003 * 109.46957 * 63.90452 * 1 2 3 32 32 H 1.09004 * 110.41762 * 322.28442 * 4 2 1 33 33 H 1.09003 * 110.30024 * 200.08397 * 4 2 1 34 34 H 1.08002 * 120.04077 * 0.02763 * 9 8 6 35 35 H 1.07991 * 119.89971 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.85809 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.88801 * 239.52407 * 16 5 4 38 38 H 1.09011 * 109.88111 * 118.35721 * 16 5 4 39 39 H 1.09000 * 109.47266 * 171.15816 * 19 17 16 40 40 H 1.08999 * 109.47268 * 51.15457 * 19 17 16 41 41 H 0.97007 * 119.99306 * 0.02562 * 20 19 17 42 42 H 0.97002 * 119.99963 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0843 -0.8115 1.2003 5 7 2.0170 -2.2200 0.7704 6 6 1.9513 -3.2888 1.5889 7 8 2.0380 -3.1391 2.7921 8 6 1.7742 -4.6426 1.0236 9 6 1.8384 -4.8399 -0.3572 10 6 1.6719 -6.1051 -0.8798 11 6 1.4407 -7.1804 -0.0398 12 6 1.3742 -6.9945 1.3308 13 9 1.1477 -8.0489 2.1444 14 6 1.5458 -5.7309 1.8684 15 17 1.4704 -5.4984 3.5870 16 6 2.0322 -2.2658 -0.6990 17 6 2.0861 -0.8079 -1.2023 18 1 3.1122 -0.5137 -1.4229 19 6 1.1965 -0.6272 -2.4338 20 7 1.7785 -1.3505 -3.5672 21 6 1.1555 -1.3283 -4.7864 22 1 0.2328 -0.7812 -4.9114 23 6 1.7100 -2.0090 -5.8616 24 7 2.8343 -2.6761 -5.7091 25 14 0.8605 -1.9782 -7.5249 26 1 0.7579 -0.5758 -8.0025 27 1 1.6485 -2.7766 -8.4980 28 1 -0.5005 -2.5582 -7.3965 29 1 -0.3634 -1.0253 0.0698 30 1 -0.3633 0.5732 0.8530 31 1 -0.3633 0.4521 -0.9229 32 1 1.4654 -0.6544 2.0837 33 1 3.1162 -0.5263 1.4053 34 1 2.0184 -4.0026 -1.0152 35 1 1.7213 -6.2572 -1.9478 36 1 1.3107 -8.1688 -0.4551 37 1 1.1270 -2.7508 -1.0643 38 1 2.9118 -2.8097 -1.0439 39 1 1.1246 0.4328 -2.6777 40 1 0.2016 -1.0201 -2.2243 41 1 2.6072 -1.8422 -3.4547 42 1 3.2216 -3.1521 -6.4603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484377949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -32.125387 kcal Electronic energy + Delta-G solvation = -27547.263345 eV Core-core repulsion = 23468.490696 eV Total energy + Delta-G solvation = -4078.772649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.12488 -41.85265 -39.92781 -38.88881 -37.58951 -36.34929 -34.41351 -33.18409 -32.14818 -31.60830 -30.40042 -27.97876 -27.15476 -25.57430 -24.53669 -23.80380 -22.79629 -21.19987 -20.57430 -19.16542 -18.88162 -17.90294 -17.79293 -17.43876 -16.98460 -16.85213 -16.61629 -16.31496 -15.69160 -15.53168 -15.27184 -15.21253 -14.67825 -14.54622 -14.43371 -14.03402 -13.94815 -13.81359 -13.45966 -13.17128 -13.02447 -12.82200 -12.75998 -12.68234 -12.62140 -12.38893 -12.29309 -12.15527 -11.82076 -11.54989 -11.45638 -11.32221 -10.85804 -10.71015 -10.25543 -9.91571 -9.67059 -8.89298 -7.86920 -5.13732 -0.56644 -0.19573 0.88923 1.54834 1.55338 1.59247 1.61101 1.76842 2.42654 2.62674 2.86344 3.19801 3.42843 3.50043 3.51900 3.68907 3.76711 3.83372 4.03989 4.18902 4.21465 4.24670 4.38327 4.49779 4.52867 4.59108 4.72041 4.73650 4.78959 4.84524 4.92896 4.95151 5.05868 5.06577 5.13859 5.26544 5.27691 5.34964 5.50306 5.52387 5.60371 6.31365 6.35663 6.95217 7.43972 8.18524 8.42545 9.35584 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.003598 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.299835 B = 7781.234841 C = 9768.980491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 H 0.116 0.884 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.565 3.435 7 O -0.548 6.548 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.085 4.085 11 C -0.103 4.103 12 C 0.086 3.914 13 F -0.129 7.129 14 C -0.045 4.045 15 Cl -0.033 7.033 16 C 0.099 3.901 17 C -0.096 4.096 18 H 0.090 0.910 19 C 0.165 3.835 20 N -0.742 5.742 21 C -0.241 4.241 22 H 0.072 0.928 23 C -0.065 4.065 24 N -0.962 5.962 25 Si 0.961 3.039 26 H -0.284 1.284 27 H -0.298 1.298 28 H -0.280 1.280 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.377 0.623 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 -3.193 13.405 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.134 0.866 4 C -0.011 4.011 5 N -0.336 5.336 6 C 0.354 3.646 7 O -0.427 6.427 8 C -0.120 4.120 9 C -0.136 4.136 10 C -0.103 4.103 11 C -0.122 4.122 12 C 0.066 3.934 13 F -0.108 7.108 14 C -0.074 4.074 15 Cl -0.004 7.004 16 C -0.022 4.022 17 C -0.115 4.115 18 H 0.108 0.892 19 C 0.038 3.962 20 N -0.385 5.385 21 C -0.373 4.373 22 H 0.090 0.910 23 C -0.258 4.258 24 N -0.613 5.613 25 Si 0.791 3.209 26 H -0.210 1.210 27 H -0.225 1.225 28 H -0.206 1.206 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.196 0.804 35 H 0.188 0.812 36 H 0.198 0.802 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.209 0.791 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.728 -3.130 14.187 14.782 hybrid contribution -0.016 -0.545 -0.640 0.841 sum -2.744 -3.674 13.546 14.302 Atomic orbital electron populations 1.21772 0.93959 1.01505 1.02689 1.22392 0.96638 0.99724 0.91687 0.86577 1.22494 1.01859 0.78626 0.98084 1.48365 1.71422 1.06621 1.07177 1.17824 0.77380 0.83833 0.85558 1.90833 1.51322 1.85939 1.14640 1.19568 1.05943 0.92444 0.94000 1.23122 0.95732 1.01333 0.93378 1.21535 0.95811 0.90696 1.02228 1.21742 0.98182 1.02942 0.89340 1.17435 1.04707 0.81958 0.89295 1.91535 1.92115 1.54483 1.72618 1.21187 1.05567 0.93504 0.87177 1.98403 1.96204 1.97149 1.08597 1.22617 1.02164 0.98754 0.78712 1.22413 1.00948 0.93420 0.94729 0.89207 1.20828 0.94872 0.95050 0.85417 1.42530 1.28385 1.60815 1.06801 1.19508 1.04536 1.24952 0.88309 0.90959 1.25342 0.98363 1.01089 1.00972 1.69756 1.21434 1.38656 1.31440 0.85409 0.77718 0.77214 0.80569 1.21005 1.22472 1.20614 0.93999 0.91183 0.91607 0.90289 0.90257 0.80393 0.81214 0.80188 0.90099 0.89966 0.95544 0.95224 0.79106 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.16 71.98 0.59 -2.26 16 2 C -0.09 -1.68 3.56 -9.33 -0.03 -1.71 16 3 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.11 2.41 6.35 86.93 0.55 2.96 16 5 N -0.60 -15.57 3.32 -826.16 -2.74 -18.31 16 6 C 0.56 16.95 7.79 86.77 0.68 17.63 16 7 O -0.55 -19.01 14.32 -3.91 -0.06 -19.07 16 8 C -0.12 -3.20 5.87 -20.08 -0.12 -3.32 16 9 C -0.12 -2.83 8.59 22.53 0.19 -2.64 16 10 C -0.08 -1.68 10.03 22.23 0.22 -1.46 16 11 C -0.10 -1.92 10.02 22.36 0.22 -1.69 16 12 C 0.09 2.06 7.27 22.36 0.16 2.22 16 13 F -0.13 -3.13 16.83 44.97 0.76 -2.37 16 14 C -0.05 -1.26 6.36 22.65 0.14 -1.12 16 15 Cl -0.03 -0.97 25.71 -2.72 -0.07 -1.04 16 16 C 0.10 2.51 3.96 86.73 0.34 2.86 16 17 C -0.10 -2.41 2.84 -9.60 -0.03 -2.43 16 18 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 19 C 0.16 5.36 4.43 86.38 0.38 5.75 16 20 N -0.74 -32.26 5.48 -343.44 -1.88 -34.15 16 21 C -0.24 -12.11 9.99 84.03 0.84 -11.27 16 22 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 23 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 24 N -0.96 -53.49 13.06 21.65 0.28 -53.21 16 25 Si 0.96 42.86 29.55 68.60 2.03 44.89 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 29 H 0.04 0.96 7.92 -2.38 -0.02 0.94 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.36 6.79 -2.39 -0.02 1.34 16 32 H 0.08 1.76 8.00 -2.39 -0.02 1.74 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.18 4.35 2.77 -7.27 -0.02 4.33 16 35 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.08 2.18 6.26 -2.39 -0.01 2.16 16 38 H 0.08 2.09 6.80 -2.38 -0.02 2.08 16 39 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 40 H 0.03 0.98 6.79 -2.39 -0.02 0.96 16 41 H 0.38 17.21 7.60 -92.70 -0.70 16.50 16 42 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -62.86 356.17 3.29 -59.57 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.36 Total: 23.11 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.62 Total: 0.58 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.34 Total: -105.67 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.76 Total: -2.37 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -62.86 3.29 -59.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484377949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.445 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds