Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99990 * 2 1 4 4 H 1.08004 * 119.99576 * 214.07538 * 3 2 1 5 5 C 1.38803 * 119.99724 * 34.08048 * 3 2 1 6 6 N 1.31620 * 120.00492 * 355.27629 * 5 3 2 7 7 Si 1.86807 * 119.99797 * 175.28007 * 5 3 2 8 8 H 1.48504 * 109.46981 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46959 * 119.99921 * 7 5 3 10 10 H 1.48497 * 109.47180 * 239.99802 * 7 5 3 11 11 C 1.46501 * 119.99922 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47405 * 89.99987 * 11 2 1 13 13 H 1.09001 * 110.91208 * 308.89832 * 12 11 2 14 14 C 1.55154 * 111.00385 * 185.00315 * 12 11 2 15 15 C 1.54323 * 103.10470 * 206.51182 * 14 12 11 16 16 N 1.47030 * 107.26783 * 22.09959 * 15 14 12 17 17 C 1.34773 * 125.64380 * 181.02575 * 16 15 14 18 18 O 1.21559 * 119.99881 * 174.26047 * 17 16 15 19 19 C 1.47857 * 120.00424 * 354.26217 * 17 16 15 20 20 C 1.39564 * 120.12540 * 7.11233 * 19 17 16 21 21 C 1.38181 * 119.84904 * 179.69854 * 20 19 17 22 22 F 1.35102 * 119.94370 * 180.29615 * 21 20 19 23 23 C 1.38570 * 120.10735 * 0.60117 * 21 20 19 24 24 C 1.38403 * 120.25196 * 359.67442 * 23 21 20 25 25 Cl 1.73605 * 119.92277 * 180.02562 * 24 23 21 26 26 C 1.38101 * 120.15351 * 0.02566 * 24 23 21 27 27 C 1.47418 * 108.70172 * 1.06474 * 16 15 14 28 28 H 1.08993 * 109.47025 * 274.90876 * 1 2 3 29 29 H 1.09004 * 109.46785 * 34.90728 * 1 2 3 30 30 H 1.08999 * 109.47051 * 154.90275 * 1 2 3 31 31 H 0.97002 * 120.00140 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46966 * 329.99377 * 11 2 1 33 33 H 1.08998 * 109.46703 * 210.00212 * 11 2 1 34 34 H 1.08995 * 110.72741 * 88.05556 * 14 12 11 35 35 H 1.09004 * 110.72117 * 324.96077 * 14 12 11 36 36 H 1.09002 * 109.88991 * 141.51737 * 15 14 12 37 37 H 1.09001 * 109.88205 * 262.53424 * 15 14 12 38 38 H 1.08002 * 120.07348 * 359.97438 * 20 19 17 39 39 H 1.07994 * 119.86954 * 179.70005 * 23 21 20 40 40 H 1.08003 * 120.06058 * 179.97438 * 26 24 23 41 41 H 1.09000 * 110.37093 * 94.71206 * 27 16 15 42 42 H 1.09004 * 110.36280 * 216.92411 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0907 1.2662 -0.5241 5 6 1.6344 2.2848 0.6736 6 7 0.4453 2.2153 1.2335 7 14 2.6287 3.8623 0.7854 8 1 3.9228 3.6829 0.0794 9 1 1.8696 4.9716 0.1543 10 1 2.8844 4.1862 2.2119 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5297 -1.6961 -2.0231 14 6 3.1160 -3.1117 -1.4871 15 6 3.8913 -3.0902 -2.8212 16 7 4.1154 -1.6803 -3.1731 17 6 4.7425 -1.2374 -4.2808 18 8 4.7803 -0.0468 -4.5228 19 6 5.3843 -2.1997 -5.2018 20 6 5.2175 -3.5719 -5.0090 21 6 5.8148 -4.4660 -5.8768 22 9 5.6496 -5.7946 -5.6955 23 6 6.5881 -4.0023 -6.9291 24 6 6.7611 -2.6426 -7.1210 25 17 7.7312 -2.0711 -8.4425 26 6 6.1640 -1.7395 -6.2637 27 6 3.5415 -0.8316 -2.1132 28 1 -0.3633 0.0879 1.0238 29 1 -0.3633 0.8428 -0.5881 30 1 -0.3633 -0.9306 -0.4359 31 1 0.0851 2.9834 1.7039 32 1 1.6084 -2.0285 0.5130 33 1 3.1498 -1.1386 0.5134 34 1 2.3596 -3.8964 -1.4932 35 1 3.7980 -3.2421 -0.6468 36 1 4.8479 -3.5992 -2.7024 37 1 3.3050 -3.5800 -3.5987 38 1 4.6192 -3.9339 -4.1859 39 1 7.0571 -4.7047 -7.6022 40 1 6.3004 -0.6788 -6.4146 41 1 4.3078 -0.5622 -1.3863 42 1 3.0968 0.0652 -2.5446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494159179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -11.413386 kcal Electronic energy + Delta-G solvation = -26910.110968 eV Core-core repulsion = 22832.236458 eV Total energy + Delta-G solvation = -4077.874510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.38377 -40.72527 -38.90425 -37.59231 -36.85650 -35.42329 -32.81024 -31.51938 -30.94019 -30.63270 -28.93874 -26.17472 -25.84004 -24.68591 -23.16656 -22.75159 -21.27277 -20.27219 -19.70309 -18.08577 -17.31447 -16.90134 -16.73130 -16.30220 -16.18039 -15.83494 -15.31003 -15.03677 -14.71237 -14.47496 -14.00005 -13.79028 -13.56142 -13.36962 -13.19619 -13.01885 -12.63926 -12.51345 -12.38588 -12.30193 -11.72515 -11.51614 -11.48962 -11.36642 -11.07749 -10.81502 -10.64224 -10.48227 -10.38848 -10.17385 -10.05521 -9.89125 -9.79761 -9.51051 -9.22171 -8.60793 -8.47874 -6.60709 -5.75344 -3.30402 0.19625 0.51889 1.51727 2.42361 2.88691 3.29627 3.38576 3.46677 3.49312 3.65824 4.06556 4.29705 4.47014 4.48938 4.57936 4.64329 4.72928 4.85654 5.00203 5.19744 5.25616 5.37202 5.40080 5.42465 5.54867 5.62897 5.69772 5.86111 5.91725 6.00242 6.07303 6.17015 6.30437 6.41991 6.46204 6.60057 6.78035 6.88858 7.39789 7.47088 7.78353 7.84151 8.05517 8.46675 9.26437 9.85255 10.39499 11.29077 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.002658 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.533843 B =10530.574317 C =11977.639140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.602 5.602 3 C -0.261 4.261 4 H 0.067 0.933 5 C 0.014 3.986 6 N -0.903 5.903 7 Si 0.897 3.103 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.288 1.288 11 C 0.163 3.837 12 C -0.117 4.117 13 H 0.078 0.922 14 C -0.131 4.131 15 C 0.086 3.914 16 N -0.608 5.608 17 C 0.568 3.432 18 O -0.525 6.525 19 C -0.081 4.081 20 C -0.158 4.158 21 C 0.107 3.893 22 F -0.129 7.129 23 C -0.129 4.129 24 C -0.017 4.017 25 Cl -0.050 7.050 26 C -0.064 4.064 27 C 0.121 3.879 28 H 0.031 0.969 29 H 0.039 0.961 30 H -0.006 1.006 31 H 0.252 0.748 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.182 0.818 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -17.031 -14.262 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.325 5.325 3 C -0.391 4.391 4 H 0.085 0.915 5 C -0.185 4.185 6 N -0.546 5.546 7 Si 0.726 3.274 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.096 0.904 14 C -0.170 4.170 15 C -0.036 4.036 16 N -0.341 5.341 17 C 0.356 3.644 18 O -0.402 6.402 19 C -0.085 4.085 20 C -0.176 4.176 21 C 0.087 3.913 22 F -0.107 7.107 23 C -0.148 4.148 24 C -0.044 4.044 25 Cl -0.021 7.021 26 C -0.083 4.083 27 C 0.000 4.000 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.198 0.802 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.090 0.910 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.888 -16.196 -14.445 24.280 hybrid contribution 0.569 0.626 -0.152 0.859 sum 11.457 -15.570 -14.596 24.223 Atomic orbital electron populations 1.20850 0.82993 0.95157 0.99307 1.43810 1.01626 1.00569 1.86452 1.19154 1.04998 0.88416 1.26531 0.91531 1.25351 0.96813 0.99168 0.97190 1.70031 1.16086 1.29930 1.38589 0.86302 0.80129 0.83507 0.77442 1.20045 1.21641 1.21512 1.20675 0.96501 0.88786 0.90618 1.23283 0.97088 0.91914 1.01622 0.90368 1.22759 0.99531 0.99090 0.95576 1.22538 0.99837 0.83169 0.98076 1.48542 1.55914 1.08302 1.21346 1.17618 0.78988 0.87596 0.80198 1.90840 1.59845 1.16127 1.73375 1.19740 0.99349 0.92741 0.96638 1.22973 1.00801 0.92540 1.01274 1.17293 0.99561 0.77985 0.96415 1.91555 1.93979 1.30356 1.94844 1.21161 1.00082 0.94982 0.98612 1.20447 0.98270 0.92800 0.92869 1.98404 1.69131 1.89031 1.45510 1.21249 0.94028 1.01264 0.91803 1.22488 0.95397 0.94429 0.87686 0.95070 0.94215 0.98795 0.93722 0.93963 0.93085 0.90067 0.90230 0.90690 0.90661 0.80185 0.83281 0.82772 0.90998 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.97 59.85 0.54 4.40 16 2 N -0.60 -14.39 2.90 -181.13 -0.52 -14.92 16 3 C -0.26 -6.94 9.15 -15.06 -0.14 -7.08 16 4 H 0.07 1.75 6.86 -52.48 -0.36 1.39 16 5 C 0.01 0.39 5.39 -17.43 -0.09 0.29 16 6 N -0.90 -26.01 10.64 55.49 0.59 -25.42 16 7 Si 0.90 21.83 29.56 -169.99 -5.02 16.80 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.16 3.01 5.17 -4.04 -0.02 2.99 16 12 C -0.12 -1.79 3.27 -88.36 -0.29 -2.08 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.13 -1.39 6.41 -24.90 -0.16 -1.55 16 15 C 0.09 0.87 4.87 -3.06 -0.01 0.85 16 16 N -0.61 -8.61 3.33 -175.62 -0.58 -9.19 16 17 C 0.57 8.64 7.81 -12.33 -0.10 8.54 16 18 O -0.52 -10.02 16.60 5.31 0.09 -9.93 16 19 C -0.08 -0.95 5.87 -104.98 -0.62 -1.57 16 20 C -0.16 -1.50 8.59 -39.11 -0.34 -1.84 16 21 C 0.11 0.95 7.29 -39.48 -0.29 0.67 16 22 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 23 C -0.13 -1.06 9.80 -39.40 -0.39 -1.45 16 24 C -0.02 -0.16 6.31 -39.57 -0.25 -0.41 16 25 Cl -0.05 -0.43 28.95 -51.86 -1.50 -1.93 16 26 C -0.06 -0.70 9.37 -39.14 -0.37 -1.07 16 27 C 0.12 2.03 5.17 -2.42 -0.01 2.02 16 28 H 0.03 0.81 7.25 -51.93 -0.38 0.43 16 29 H 0.04 1.03 7.60 -51.93 -0.39 0.64 16 30 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.08 0.61 6.74 -51.93 -0.35 0.26 16 37 H 0.08 0.64 6.74 -51.93 -0.35 0.29 16 38 H 0.18 1.46 2.74 -57.84 -0.16 1.30 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.15 1.75 7.67 -52.48 -0.40 1.35 16 41 H 0.07 1.26 7.85 -51.93 -0.41 0.86 16 42 H 0.09 1.80 7.90 -51.93 -0.41 1.39 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -30.85 360.00 -9.30 -40.15 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.27 Total: -2.60 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.53 Total: 2.72 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.52 Total: -49.53 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.85 -9.30 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494159179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.739 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds