Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99990 * 2 1 4 4 H 1.08004 * 119.99576 * 214.07538 * 3 2 1 5 5 C 1.38803 * 119.99724 * 34.08048 * 3 2 1 6 6 N 1.31620 * 120.00492 * 355.27629 * 5 3 2 7 7 Si 1.86807 * 119.99797 * 175.28007 * 5 3 2 8 8 H 1.48504 * 109.46981 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46959 * 119.99921 * 7 5 3 10 10 H 1.48497 * 109.47180 * 239.99802 * 7 5 3 11 11 C 1.46501 * 119.99922 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47405 * 89.99987 * 11 2 1 13 13 H 1.09001 * 110.91208 * 308.89832 * 12 11 2 14 14 C 1.55154 * 111.00385 * 185.00315 * 12 11 2 15 15 C 1.54323 * 103.10470 * 206.51182 * 14 12 11 16 16 N 1.47030 * 107.26783 * 22.09959 * 15 14 12 17 17 C 1.34773 * 125.64380 * 181.02575 * 16 15 14 18 18 O 1.21559 * 119.99881 * 174.26047 * 17 16 15 19 19 C 1.47857 * 120.00424 * 354.26217 * 17 16 15 20 20 C 1.39564 * 120.12540 * 7.11233 * 19 17 16 21 21 C 1.38181 * 119.84904 * 179.69854 * 20 19 17 22 22 F 1.35102 * 119.94370 * 180.29615 * 21 20 19 23 23 C 1.38570 * 120.10735 * 0.60117 * 21 20 19 24 24 C 1.38403 * 120.25196 * 359.67442 * 23 21 20 25 25 Cl 1.73605 * 119.92277 * 180.02562 * 24 23 21 26 26 C 1.38101 * 120.15351 * 0.02566 * 24 23 21 27 27 C 1.47418 * 108.70172 * 1.06474 * 16 15 14 28 28 H 1.08993 * 109.47025 * 274.90876 * 1 2 3 29 29 H 1.09004 * 109.46785 * 34.90728 * 1 2 3 30 30 H 1.08999 * 109.47051 * 154.90275 * 1 2 3 31 31 H 0.97002 * 120.00140 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46966 * 329.99377 * 11 2 1 33 33 H 1.08998 * 109.46703 * 210.00212 * 11 2 1 34 34 H 1.08995 * 110.72741 * 88.05556 * 14 12 11 35 35 H 1.09004 * 110.72117 * 324.96077 * 14 12 11 36 36 H 1.09002 * 109.88991 * 141.51737 * 15 14 12 37 37 H 1.09001 * 109.88205 * 262.53424 * 15 14 12 38 38 H 1.08002 * 120.07348 * 359.97438 * 20 19 17 39 39 H 1.07994 * 119.86954 * 179.70005 * 23 21 20 40 40 H 1.08003 * 120.06058 * 179.97438 * 26 24 23 41 41 H 1.09000 * 110.37093 * 94.71206 * 27 16 15 42 42 H 1.09004 * 110.36280 * 216.92411 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0907 1.2662 -0.5241 5 6 1.6344 2.2848 0.6736 6 7 0.4453 2.2153 1.2335 7 14 2.6287 3.8623 0.7854 8 1 3.9228 3.6829 0.0794 9 1 1.8696 4.9716 0.1543 10 1 2.8844 4.1862 2.2119 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5297 -1.6961 -2.0231 14 6 3.1160 -3.1117 -1.4871 15 6 3.8913 -3.0902 -2.8212 16 7 4.1154 -1.6803 -3.1731 17 6 4.7425 -1.2374 -4.2808 18 8 4.7803 -0.0468 -4.5228 19 6 5.3843 -2.1997 -5.2018 20 6 5.2175 -3.5719 -5.0090 21 6 5.8148 -4.4660 -5.8768 22 9 5.6496 -5.7946 -5.6955 23 6 6.5881 -4.0023 -6.9291 24 6 6.7611 -2.6426 -7.1210 25 17 7.7312 -2.0711 -8.4425 26 6 6.1640 -1.7395 -6.2637 27 6 3.5415 -0.8316 -2.1132 28 1 -0.3633 0.0879 1.0238 29 1 -0.3633 0.8428 -0.5881 30 1 -0.3633 -0.9306 -0.4359 31 1 0.0851 2.9834 1.7039 32 1 1.6084 -2.0285 0.5130 33 1 3.1498 -1.1386 0.5134 34 1 2.3596 -3.8964 -1.4932 35 1 3.7980 -3.2421 -0.6468 36 1 4.8479 -3.5992 -2.7024 37 1 3.3050 -3.5800 -3.5987 38 1 4.6192 -3.9339 -4.1859 39 1 7.0571 -4.7047 -7.6022 40 1 6.3004 -0.6788 -6.4146 41 1 4.3078 -0.5622 -1.3863 42 1 3.0968 0.0652 -2.5446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494159179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -28.570519 kcal Electronic energy + Delta-G solvation = -26910.854957 eV Core-core repulsion = 22832.236458 eV Total energy + Delta-G solvation = -4078.618499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.06539 -41.75630 -39.82673 -38.81908 -37.60046 -37.13071 -34.21068 -32.86203 -31.94026 -31.73683 -30.12702 -27.85298 -27.55894 -25.82417 -23.99822 -23.85638 -22.78125 -21.30821 -21.03688 -19.03335 -18.78189 -18.13777 -17.51188 -17.34212 -17.04905 -16.85508 -16.73282 -16.35675 -15.87255 -15.58258 -15.24610 -15.07762 -14.77088 -14.51695 -14.41470 -14.34628 -13.93307 -13.77504 -13.49355 -13.19316 -13.06383 -12.88580 -12.82581 -12.54970 -12.48711 -12.23925 -12.19756 -12.07985 -11.97648 -11.71412 -11.51510 -11.43871 -11.16743 -10.58446 -10.29666 -9.98696 -9.73725 -8.58417 -7.84155 -5.39825 -0.61045 -0.23140 0.79717 1.41647 1.44623 1.47026 1.53750 1.79754 2.37038 2.48620 2.88156 3.20515 3.30657 3.53763 3.58109 3.73050 3.77253 3.85711 3.90403 4.08535 4.13968 4.25387 4.39508 4.41666 4.59659 4.66874 4.78826 4.80706 4.84288 4.85679 4.92582 4.92698 4.99548 5.09485 5.22876 5.26331 5.39434 5.42941 5.55319 5.70544 5.78562 6.36321 6.41706 6.90163 7.21190 7.90700 8.37438 9.18205 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.002658 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.533843 B =10530.574317 C =11977.639140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.620 5.620 3 C -0.257 4.257 4 H 0.063 0.937 5 C -0.042 4.042 6 N -0.933 5.933 7 Si 0.953 3.047 8 H -0.272 1.272 9 H -0.294 1.294 10 H -0.286 1.286 11 C 0.161 3.839 12 C -0.107 4.107 13 H 0.068 0.932 14 C -0.117 4.117 15 C 0.079 3.921 16 N -0.608 5.608 17 C 0.562 3.438 18 O -0.580 6.580 19 C -0.095 4.095 20 C -0.144 4.144 21 C 0.111 3.889 22 F -0.124 7.124 23 C -0.113 4.113 24 C -0.018 4.018 25 Cl -0.043 7.043 26 C -0.072 4.072 27 C 0.125 3.875 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.031 0.969 31 H 0.248 0.752 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.199 0.801 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.059 0.941 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.155 -20.759 -15.153 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.387 4.387 4 H 0.081 0.919 5 C -0.238 4.238 6 N -0.579 5.579 7 Si 0.782 3.218 8 H -0.197 1.197 9 H -0.221 1.221 10 H -0.212 1.212 11 C 0.034 3.966 12 C -0.129 4.129 13 H 0.087 0.913 14 C -0.155 4.155 15 C -0.042 4.042 16 N -0.339 5.339 17 C 0.352 3.648 18 O -0.462 6.462 19 C -0.098 4.098 20 C -0.162 4.162 21 C 0.092 3.908 22 F -0.102 7.102 23 C -0.133 4.133 24 C -0.045 4.045 25 Cl -0.014 7.014 26 C -0.092 4.092 27 C 0.003 3.997 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.215 0.785 39 H 0.193 0.807 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.189 -19.999 -15.341 27.997 hybrid contribution 0.221 1.690 0.039 1.705 sum 12.409 -18.308 -15.302 26.895 Atomic orbital electron populations 1.20576 0.83352 0.95580 0.97457 1.44064 1.01824 1.01792 1.86712 1.19372 1.04520 0.89716 1.25118 0.91914 1.25989 0.97815 1.02030 0.97953 1.70175 1.17273 1.30376 1.40032 0.85420 0.78862 0.80322 0.77240 1.19680 1.22113 1.21246 1.20876 0.96008 0.86859 0.92817 1.22975 0.96444 0.94854 0.98661 0.91336 1.22769 1.00128 0.96230 0.96344 1.22925 1.01868 0.80808 0.98575 1.48573 1.55104 1.09843 1.20392 1.18202 0.78486 0.87567 0.80542 1.90802 1.61962 1.18627 1.74786 1.19371 1.00732 0.93019 0.96725 1.23014 1.00338 0.91265 1.01624 1.17219 0.99339 0.78028 0.96252 1.91579 1.93917 1.29909 1.94796 1.21429 0.98796 0.94721 0.98307 1.20406 0.98277 0.93033 0.92788 1.98409 1.68865 1.89117 1.45034 1.21203 0.94577 1.01099 0.92336 1.22186 0.95543 0.93888 0.88099 0.97545 0.97502 0.95062 0.94272 0.91746 0.93375 0.86899 0.88912 0.87667 0.88095 0.78502 0.80742 0.84195 0.92268 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.50 8.97 127.77 1.15 9.65 16 2 N -0.62 -29.99 2.90 -726.96 -2.11 -32.09 16 3 C -0.26 -14.00 9.15 84.03 0.77 -13.23 16 4 H 0.06 3.42 6.86 -2.91 -0.02 3.40 16 5 C -0.04 -2.39 5.39 84.86 0.46 -1.93 16 6 N -0.93 -55.46 10.64 21.65 0.23 -55.23 16 7 Si 0.95 46.27 29.56 68.60 2.03 48.30 16 8 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 9 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 C 0.16 5.75 5.17 86.38 0.45 6.20 16 12 C -0.11 -3.12 3.27 -9.33 -0.03 -3.16 16 13 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 14 C -0.12 -1.99 6.41 31.78 0.20 -1.78 16 15 C 0.08 1.28 4.87 86.73 0.42 1.70 16 16 N -0.61 -16.71 3.33 -827.82 -2.75 -19.47 16 17 C 0.56 17.30 7.81 86.79 0.68 17.98 16 18 O -0.58 -23.57 16.60 -3.90 -0.06 -23.63 16 19 C -0.09 -2.13 5.87 -20.10 -0.12 -2.25 16 20 C -0.14 -2.27 8.59 22.58 0.19 -2.08 16 21 C 0.11 1.55 7.29 22.34 0.16 1.72 16 22 F -0.12 -1.66 17.26 44.97 0.78 -0.88 16 23 C -0.11 -1.49 9.80 22.39 0.22 -1.27 16 24 C -0.02 -0.30 6.31 22.28 0.14 -0.16 16 25 Cl -0.04 -0.68 28.95 -2.72 -0.08 -0.76 16 26 C -0.07 -1.55 9.37 22.55 0.21 -1.34 16 27 C 0.13 4.30 5.17 86.93 0.45 4.75 16 28 H 0.01 0.33 7.25 -2.39 -0.02 0.32 16 29 H 0.01 0.33 7.60 -2.38 -0.02 0.32 16 30 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 31 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 33 H 0.05 1.75 7.87 -2.39 -0.02 1.73 16 34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.41 8.04 -2.38 -0.02 1.39 16 36 H 0.11 1.18 6.74 -2.39 -0.02 1.16 16 37 H 0.10 1.21 6.74 -2.39 -0.02 1.19 16 38 H 0.20 2.28 2.74 -7.94 -0.02 2.25 16 39 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.14 3.36 7.67 -2.91 -0.02 3.33 16 41 H 0.06 2.15 7.85 -2.39 -0.02 2.13 16 42 H 0.04 1.78 7.90 -2.38 -0.02 1.76 16 Total: -1.00 -71.54 360.00 4.43 -67.12 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.04 Total: 1.84 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 5.35 Total: 14.80 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.63 Total: -106.79 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.78 Total: -0.88 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -71.54 4.43 -67.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494159179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.549 kcal (2) G-P(sol) polarization free energy of solvation -71.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds