Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46684 * 90.00566 * 3 2 1 5 5 N 1.46502 * 109.47216 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00061 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.47733 * 119.99821 * 180.02562 * 6 5 4 9 9 C 1.39646 * 120.11740 * 0.27389 * 8 6 5 10 10 C 1.37838 * 119.88070 * 180.23285 * 9 8 6 11 11 C 1.38658 * 120.11710 * 359.49180 * 10 9 8 12 12 F 1.35093 * 119.88405 * 180.27876 * 11 10 9 13 13 C 1.38657 * 120.23712 * 0.25791 * 11 10 9 14 14 C 1.37840 * 120.11828 * 359.97438 * 13 11 10 15 15 C 1.34771 * 119.99844 * 180.02562 * 2 1 3 16 16 O 1.21287 * 119.99970 * 179.97438 * 15 2 1 17 17 C 1.50707 * 120.00202 * 359.97438 * 15 2 1 18 18 S 1.81000 * 109.47115 * 179.97438 * 17 15 2 19 19 C 1.76198 * 99.99823 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00191 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99789 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99948 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47518 * 89.99550 * 23 21 19 25 25 H 1.48501 * 109.47088 * 209.99984 * 23 21 19 26 26 H 1.48501 * 109.46998 * 329.99550 * 23 21 19 27 27 H 1.09000 * 109.46934 * 89.99490 * 1 2 3 28 28 H 1.08999 * 109.46945 * 210.00035 * 1 2 3 29 29 H 1.08996 * 109.46633 * 329.99648 * 1 2 3 30 30 H 1.08994 * 109.47760 * 330.00594 * 3 2 1 31 31 H 1.08994 * 109.46867 * 210.00006 * 3 2 1 32 32 H 1.09001 * 109.47274 * 60.00156 * 4 3 2 33 33 H 1.09000 * 109.47271 * 299.99714 * 4 3 2 34 34 H 0.97006 * 119.99574 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.06390 * 0.02562 * 9 8 6 36 36 H 1.08002 * 119.94593 * 179.77526 * 10 9 8 37 37 H 1.08003 * 119.94100 * 180.02562 * 13 11 10 38 38 H 1.08004 * 120.05787 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.46972 * 300.00052 * 17 15 2 40 40 H 1.09004 * 109.46621 * 60.00409 * 17 15 2 41 41 H 0.97003 * 119.99812 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 1.4425 5 7 3.1856 2.9787 1.4427 6 6 3.5222 3.5624 2.6099 7 8 3.2180 3.0361 3.6627 8 6 4.2609 4.8418 2.6100 9 6 4.6065 5.4514 1.4021 10 6 5.3000 6.6426 1.4078 11 6 5.6450 7.2410 2.6101 12 9 6.3197 8.4114 2.6102 13 6 5.2997 6.6426 3.8123 14 6 4.6105 5.4489 3.8179 15 6 2.1389 -1.1672 -0.0005 16 8 3.3518 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8481 -0.0020 19 6 1.4415 -5.2082 -0.0026 20 1 0.3762 -5.0305 -0.0016 21 6 1.9282 -6.5081 -0.0032 22 7 1.0914 -7.5242 -0.0031 23 14 3.7707 -6.8155 -0.0028 24 1 4.2586 -6.8977 1.3973 25 1 4.0597 -8.0925 -0.7035 26 1 4.4587 -5.7006 -0.7020 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8899 0.5139 30 1 1.6085 2.0284 -0.5137 31 1 3.1499 1.1384 -0.5138 32 1 3.0417 0.9506 1.9563 33 1 1.5002 1.8405 1.9564 34 1 3.4280 3.3988 0.6026 35 1 4.3340 4.9886 0.4650 36 1 5.5710 7.1132 0.4742 37 1 5.5706 7.1131 4.7460 38 1 4.3417 4.9839 4.7549 39 1 0.7591 -2.5302 0.8897 40 1 0.7584 -2.5298 -0.8904 41 1 1.4316 -8.4326 -0.0039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495806976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -85.498101 kcal Electronic energy + Delta-G solvation = -25200.025472 eV Core-core repulsion = 21120.982114 eV Total energy + Delta-G solvation = -4079.043358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.49244 -40.62394 -39.69354 -38.54255 -36.14867 -34.82131 -32.45553 -31.98744 -31.56332 -30.44022 -28.41603 -26.61313 -25.63683 -24.42113 -23.64871 -22.80928 -21.05712 -19.49635 -18.65485 -17.84658 -17.72188 -17.15065 -16.82536 -16.31865 -16.18460 -15.74260 -15.65012 -15.46548 -15.19596 -14.95847 -14.39078 -14.15626 -14.09168 -13.80342 -13.68831 -13.36493 -13.20892 -13.12290 -12.81038 -12.72575 -12.49218 -12.46413 -11.98415 -11.63038 -11.61898 -11.27421 -11.02152 -10.62992 -10.41165 -9.87914 -9.78088 -9.60089 -9.52399 -9.25283 -9.01971 -8.80411 -8.52050 -6.94545 -6.30529 -4.02667 0.13783 0.61698 2.31796 2.41328 2.78432 2.88545 3.22874 3.24289 3.32629 3.49114 3.57240 3.59001 4.06029 4.22206 4.24344 4.31422 4.49154 4.58245 4.61486 4.72091 4.75105 4.98489 5.08587 5.10911 5.16031 5.19251 5.29533 5.32812 5.45714 5.55707 5.58196 5.62635 5.64949 5.71696 5.78003 5.95644 5.96820 6.18706 6.41125 7.05912 7.27961 7.81049 7.92392 8.31440 8.39707 9.15621 10.78606 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.001783 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.497536 B =15704.403027 C =16170.159997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.621 5.621 3 C 0.108 3.892 4 C 0.102 3.898 5 N -0.721 5.721 6 C 0.559 3.441 7 O -0.530 6.530 8 C -0.144 4.144 9 C -0.057 4.057 10 C -0.161 4.161 11 C 0.123 3.877 12 F -0.135 7.135 13 C -0.161 4.161 14 C -0.030 4.030 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 31.567 1.298 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.357 5.357 3 C -0.016 4.016 4 C -0.022 4.022 5 N -0.374 5.374 6 C 0.346 3.654 7 O -0.407 6.407 8 C -0.147 4.147 9 C -0.076 4.076 10 C -0.179 4.179 11 C 0.103 3.897 12 F -0.113 7.113 13 C -0.180 4.180 14 C -0.049 4.049 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.166 0.834 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.431 30.982 2.039 31.363 hybrid contribution -0.629 0.044 -0.413 0.754 sum 3.802 31.025 1.626 31.300 Atomic orbital electron populations 1.21860 0.78939 1.03589 1.02171 1.47700 1.07116 1.05047 1.75842 1.21445 0.98941 0.85860 0.95349 1.21823 0.97118 0.84986 0.98310 1.45726 1.58685 1.24510 1.08482 1.18108 0.79133 0.84272 0.83868 1.90825 1.54256 1.64566 1.31022 1.20028 1.03700 0.96614 0.94375 1.21182 0.94931 0.93893 0.97547 1.21105 1.02063 0.97242 0.97529 1.17999 0.94212 0.82722 0.94726 1.91534 1.77347 1.44983 1.97431 1.21188 1.02043 0.97173 0.97558 1.21185 0.92592 0.92639 0.98443 1.20405 0.87965 0.84664 0.74981 1.90707 1.13677 1.86762 1.47588 1.23315 1.03136 0.94970 1.05745 1.84807 1.11901 0.97539 1.97422 1.22299 0.94843 0.90864 1.58898 0.89360 1.24709 0.98536 0.94875 0.93154 1.69936 1.34796 0.98887 1.47974 0.86737 0.85348 0.79813 0.79968 1.19182 1.19929 1.15953 0.92266 0.90248 0.91138 0.90037 0.89078 0.90328 0.90978 0.76517 0.84453 0.83895 0.83831 0.83404 0.88360 0.88362 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.24 59.85 0.61 1.29 16 2 N -0.62 -7.47 2.87 -181.57 -0.52 -7.99 16 3 C 0.11 1.01 5.52 -4.04 -0.02 0.99 16 4 C 0.10 1.06 6.00 -4.04 -0.02 1.03 16 5 N -0.72 -6.02 5.51 -61.28 -0.34 -6.36 16 6 C 0.56 5.90 7.77 -12.38 -0.10 5.80 16 7 O -0.53 -7.77 16.34 5.31 0.09 -7.68 16 8 C -0.14 -1.15 5.87 -104.97 -0.62 -1.77 16 9 C -0.06 -0.31 9.54 -39.20 -0.37 -0.68 16 10 C -0.16 -0.88 10.01 -39.57 -0.40 -1.28 16 11 C 0.12 0.83 7.31 -39.27 -0.29 0.54 16 12 F -0.13 -1.02 17.26 2.25 0.04 -0.98 16 13 C -0.16 -1.04 10.01 -39.57 -0.40 -1.43 16 14 C -0.03 -0.23 9.59 -39.20 -0.38 -0.60 16 15 C 0.53 9.11 7.69 -10.98 -0.08 9.03 16 16 O -0.51 -10.62 15.44 5.55 0.09 -10.53 16 17 C -0.12 -2.28 4.71 36.01 0.17 -2.11 16 18 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 23 Si 0.86 21.70 27.74 -169.99 -4.71 16.98 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 29 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.09 0.96 7.42 -51.93 -0.39 0.58 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 1.98 6.50 -40.82 -0.27 1.71 16 35 H 0.14 0.36 6.40 -52.48 -0.34 0.03 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.15 1.13 7.65 -52.48 -0.40 0.73 16 39 H 0.10 1.73 7.40 -51.92 -0.38 1.35 16 40 H 0.10 1.71 8.11 -51.91 -0.42 1.29 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -36.71 371.38 -7.72 -44.43 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.06 Total: -1.25 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.68 Total: -1.06 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.08 Total: -39.93 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.17 Total: -18.22 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.71 -7.72 -44.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495806976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.069 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds