Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46684 * 90.00566 * 3 2 1 5 5 N 1.46502 * 109.47216 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00061 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.47733 * 119.99821 * 180.02562 * 6 5 4 9 9 C 1.39646 * 120.11740 * 0.27389 * 8 6 5 10 10 C 1.37838 * 119.88070 * 180.23285 * 9 8 6 11 11 C 1.38658 * 120.11710 * 359.49180 * 10 9 8 12 12 F 1.35093 * 119.88405 * 180.27876 * 11 10 9 13 13 C 1.38657 * 120.23712 * 0.25791 * 11 10 9 14 14 C 1.37840 * 120.11828 * 359.97438 * 13 11 10 15 15 C 1.34771 * 119.99844 * 180.02562 * 2 1 3 16 16 O 1.21287 * 119.99970 * 179.97438 * 15 2 1 17 17 C 1.50707 * 120.00202 * 359.97438 * 15 2 1 18 18 S 1.81000 * 109.47115 * 179.97438 * 17 15 2 19 19 C 1.76198 * 99.99823 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00191 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99789 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99948 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47518 * 89.99550 * 23 21 19 25 25 H 1.48501 * 109.47088 * 209.99984 * 23 21 19 26 26 H 1.48501 * 109.46998 * 329.99550 * 23 21 19 27 27 H 1.09000 * 109.46934 * 89.99490 * 1 2 3 28 28 H 1.08999 * 109.46945 * 210.00035 * 1 2 3 29 29 H 1.08996 * 109.46633 * 329.99648 * 1 2 3 30 30 H 1.08994 * 109.47760 * 330.00594 * 3 2 1 31 31 H 1.08994 * 109.46867 * 210.00006 * 3 2 1 32 32 H 1.09001 * 109.47274 * 60.00156 * 4 3 2 33 33 H 1.09000 * 109.47271 * 299.99714 * 4 3 2 34 34 H 0.97006 * 119.99574 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.06390 * 0.02562 * 9 8 6 36 36 H 1.08002 * 119.94593 * 179.77526 * 10 9 8 37 37 H 1.08003 * 119.94100 * 180.02562 * 13 11 10 38 38 H 1.08004 * 120.05787 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.46972 * 300.00052 * 17 15 2 40 40 H 1.09004 * 109.46621 * 60.00409 * 17 15 2 41 41 H 0.97003 * 119.99812 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 1.4425 5 7 3.1856 2.9787 1.4427 6 6 3.5222 3.5624 2.6099 7 8 3.2180 3.0361 3.6627 8 6 4.2609 4.8418 2.6100 9 6 4.6065 5.4514 1.4021 10 6 5.3000 6.6426 1.4078 11 6 5.6450 7.2410 2.6101 12 9 6.3197 8.4114 2.6102 13 6 5.2997 6.6426 3.8123 14 6 4.6105 5.4489 3.8179 15 6 2.1389 -1.1672 -0.0005 16 8 3.3518 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8481 -0.0020 19 6 1.4415 -5.2082 -0.0026 20 1 0.3762 -5.0305 -0.0016 21 6 1.9282 -6.5081 -0.0032 22 7 1.0914 -7.5242 -0.0031 23 14 3.7707 -6.8155 -0.0028 24 1 4.2586 -6.8977 1.3973 25 1 4.0597 -8.0925 -0.7035 26 1 4.4587 -5.7006 -0.7020 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8899 0.5139 30 1 1.6085 2.0284 -0.5137 31 1 3.1499 1.1384 -0.5138 32 1 3.0417 0.9506 1.9563 33 1 1.5002 1.8405 1.9564 34 1 3.4280 3.3988 0.6026 35 1 4.3340 4.9886 0.4650 36 1 5.5710 7.1132 0.4742 37 1 5.5706 7.1131 4.7460 38 1 4.3417 4.9839 4.7549 39 1 0.7591 -2.5302 0.8897 40 1 0.7584 -2.5298 -0.8904 41 1 1.4316 -8.4326 -0.0039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495806976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -110.976320 kcal Electronic energy + Delta-G solvation = -25201.130290 eV Core-core repulsion = 21120.982114 eV Total energy + Delta-G solvation = -4080.148176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.02972 -41.38806 -40.84752 -39.19767 -37.20682 -35.77667 -34.67440 -32.67752 -32.12649 -31.44433 -29.48907 -27.86347 -27.45847 -25.16718 -24.19515 -23.55396 -21.81749 -20.72833 -19.62367 -19.25373 -18.46682 -18.12592 -17.81121 -17.26307 -17.07310 -16.80081 -16.73297 -16.48310 -16.39736 -15.95260 -15.63593 -15.08864 -14.95508 -14.91343 -14.63749 -14.36564 -14.28403 -14.21519 -13.79488 -13.61890 -13.36692 -13.31229 -13.20832 -13.09707 -12.97735 -12.71157 -12.35009 -12.09263 -11.86920 -11.30395 -11.17691 -10.98024 -10.52814 -10.34051 -10.23916 -9.82776 -9.81474 -9.00638 -8.51906 -6.22715 -0.42874 0.15687 0.96701 1.31014 1.42289 1.47118 1.52700 1.63321 1.82040 2.24087 2.32659 2.64440 2.68795 2.86436 3.09980 3.55429 3.60251 3.63652 3.80432 3.85095 4.00534 4.14444 4.16130 4.22086 4.30585 4.37797 4.45265 4.68162 4.73025 4.73820 4.84621 4.89363 4.98141 4.99493 5.05067 5.18562 5.19601 5.50655 5.70432 5.70501 6.11044 6.16835 6.39354 6.93423 7.04017 7.08369 8.60329 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023279 B = 0.001783 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.497536 B =15704.403027 C =16170.159997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.111 3.889 4 C 0.111 3.889 5 N -0.705 5.705 6 C 0.557 3.443 7 O -0.581 6.581 8 C -0.159 4.159 9 C -0.045 4.045 10 C -0.156 4.156 11 C 0.114 3.886 12 F -0.140 7.140 13 C -0.162 4.162 14 C -0.042 4.042 15 C 0.531 3.469 16 O -0.558 6.558 17 C -0.107 4.107 18 S -0.180 6.180 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.265 1.265 25 H -0.258 1.258 26 H -0.236 1.236 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.419 0.581 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 34.215 -0.295 34.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.341 5.341 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.358 5.358 6 C 0.345 3.655 7 O -0.462 6.462 8 C -0.163 4.163 9 C -0.064 4.064 10 C -0.174 4.174 11 C 0.094 3.906 12 F -0.118 7.118 13 C -0.180 4.180 14 C -0.061 4.061 15 C 0.319 3.681 16 O -0.436 6.436 17 C -0.258 4.258 18 S 0.047 5.953 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.189 1.189 25 H -0.183 1.183 26 H -0.160 1.160 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.149 0.851 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.258 0.742 35 H 0.188 0.812 36 H 0.187 0.813 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.460 33.680 0.403 33.976 hybrid contribution -0.770 -0.596 0.091 0.978 sum 3.690 33.084 0.494 33.293 Atomic orbital electron populations 1.22183 0.76433 1.04886 1.03901 1.47681 1.08653 1.04340 1.73415 1.21650 0.99351 0.85414 0.94769 1.21601 0.96559 0.84719 0.98612 1.45537 1.57778 1.23565 1.08951 1.18542 0.78605 0.84815 0.83519 1.90798 1.56451 1.66092 1.32871 1.19944 1.04723 0.95938 0.95653 1.21465 0.93696 0.93522 0.97684 1.21407 1.01042 0.96903 0.98048 1.18230 0.94300 0.82658 0.95394 1.91524 1.77508 1.45327 1.97484 1.21292 1.01628 0.96706 0.98423 1.21194 0.93365 0.93265 0.98312 1.20076 0.87294 0.85469 0.75284 1.90691 1.15289 1.87405 1.50193 1.23297 1.01767 0.93537 1.07177 1.84729 1.13925 0.99100 1.97572 1.22445 0.94392 0.92452 1.58246 0.91842 1.25545 1.02642 0.94808 0.92927 1.70012 1.36715 0.99514 1.49106 0.85885 0.80354 0.80128 0.80115 1.18944 1.18260 1.16033 0.90230 0.91028 0.87954 0.85058 0.90004 0.94625 0.90687 0.74225 0.81240 0.81326 0.82505 0.84383 0.87159 0.86702 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.24 127.77 1.31 2.24 16 2 N -0.61 -13.06 2.87 -846.76 -2.43 -15.49 16 3 C 0.11 1.74 5.52 86.38 0.48 2.22 16 4 C 0.11 2.13 6.00 86.38 0.52 2.65 16 5 N -0.70 -10.45 5.51 -466.08 -2.57 -13.02 16 6 C 0.56 11.46 7.77 86.75 0.67 12.13 16 7 O -0.58 -17.64 16.34 -3.93 -0.06 -17.70 16 8 C -0.16 -2.38 5.87 -20.09 -0.12 -2.49 16 9 C -0.05 -0.36 9.54 22.52 0.21 -0.15 16 10 C -0.16 -1.24 10.01 22.28 0.22 -1.02 16 11 C 0.11 1.33 7.31 22.47 0.16 1.50 16 12 F -0.14 -1.89 17.26 44.97 0.78 -1.11 16 13 C -0.16 -1.95 10.01 22.28 0.22 -1.73 16 14 C -0.04 -0.64 9.59 22.52 0.22 -0.43 16 15 C 0.53 17.66 7.69 87.66 0.67 18.33 16 16 O -0.56 -23.04 15.44 -3.05 -0.05 -23.08 16 17 C -0.11 -3.96 4.71 71.24 0.34 -3.62 16 18 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 19 C -0.53 -30.59 10.04 67.96 0.68 -29.91 16 20 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 21 C 0.05 2.71 5.50 84.86 0.47 3.18 16 22 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 23 Si 0.91 45.08 27.74 68.60 1.90 46.98 16 24 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.14 6.44 -2.39 -0.02 1.12 16 29 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 30 H 0.13 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.08 1.52 7.42 -2.39 -0.02 1.51 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.42 2.73 6.50 -92.70 -0.60 2.12 16 35 H 0.17 0.14 6.40 -2.91 -0.02 0.13 16 36 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.14 2.29 7.65 -2.91 -0.02 2.27 16 39 H 0.11 3.81 7.40 -2.40 -0.02 3.79 16 40 H 0.11 3.85 8.11 -2.39 -0.02 3.83 16 41 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -83.54 371.38 3.32 -80.22 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.43 Total: 5.69 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.06 Total: 2.90 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -4.70 Total: -83.79 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.11 Total: -40.79 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.78 Total: -1.11 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -83.54 3.32 -80.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495806976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.753 kcal (2) G-P(sol) polarization free energy of solvation -83.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds