Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47566 * 2 1 4 4 C 1.53006 * 109.47268 * 120.00134 * 2 1 3 5 5 N 1.46898 * 109.47138 * 174.99901 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46949 * 60.00154 * 14 12 10 16 16 H 1.48496 * 109.47431 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47561 * 300.00356 * 14 12 10 18 18 N 1.46500 * 109.47187 * 239.99643 * 2 1 3 19 19 C 1.34783 * 119.99492 * 85.00558 * 18 2 1 20 20 O 1.21526 * 120.00094 * 359.97438 * 19 18 2 21 21 C 1.48073 * 120.00001 * 180.02562 * 19 18 2 22 22 C 1.39872 * 120.93280 * 359.97438 * 21 19 18 23 23 C 1.38085 * 119.02228 * 179.97438 * 22 21 19 24 24 N 1.31844 * 120.93537 * 0.02562 * 23 22 21 25 25 C 1.31752 * 122.07899 * 359.97438 * 24 23 22 26 26 C 1.38368 * 120.86704 * 359.73850 * 25 24 23 27 27 Cl 1.73599 * 120.51663 * 180.26354 * 26 25 24 28 28 H 1.09002 * 109.47076 * 300.00066 * 1 2 3 29 29 H 1.09000 * 109.47314 * 59.99687 * 1 2 3 30 30 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46770 * 54.99847 * 4 2 1 32 32 H 1.08995 * 109.47019 * 295.00060 * 4 2 1 33 33 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 34 34 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 35 35 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 36 36 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 37 37 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 38 38 H 0.96993 * 120.00698 * 265.00113 * 18 2 1 39 39 H 1.08000 * 120.48825 * 359.95505 * 22 21 19 40 40 H 1.07996 * 119.53006 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.57108 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3762 7 6 5.5315 -1.6056 2.2801 8 8 6.1065 -1.1405 1.3187 9 7 6.2351 -2.2025 3.2626 10 6 7.6009 -2.2835 3.1754 11 1 8.1129 -1.8694 2.3194 12 6 8.3265 -2.8983 4.1885 13 7 7.7035 -3.4018 5.2303 14 14 10.1873 -3.0094 4.0695 15 1 10.7611 -1.6417 3.9967 16 1 10.7193 -3.7056 5.2684 17 1 10.5610 -3.7685 2.8491 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0182 -2.3571 20 8 1.8577 1.1608 -2.4117 21 6 2.6401 -0.7164 -3.5663 22 6 2.9783 -2.0730 -3.5256 23 6 3.4335 -2.6847 -4.6768 24 7 3.5516 -2.0085 -5.8024 25 6 3.2447 -0.7300 -5.8861 26 6 2.7752 -0.0389 -4.7831 27 17 2.3671 1.6440 -4.9053 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7198 1.2951 32 1 1.7516 -0.1584 2.1370 33 1 3.7995 -1.2885 0.3432 34 1 3.7557 -0.9589 3.2720 35 1 3.6094 -2.5201 2.4294 36 1 5.7753 -2.5740 4.0315 37 1 8.2099 -3.8313 5.9374 38 1 2.2490 -1.6318 -1.1526 39 1 2.8850 -2.6336 -2.6072 40 1 3.6965 -3.7319 -4.6548 41 1 3.3574 -0.2154 -6.8289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498123555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -58.097180 kcal Electronic energy + Delta-G solvation = -26277.315801 eV Core-core repulsion = 22217.336892 eV Total energy + Delta-G solvation = -4059.978909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78081 -40.43610 -40.05664 -37.95166 -37.55982 -36.03342 -35.17976 -34.05261 -33.24505 -32.22186 -31.67706 -28.97147 -26.74366 -26.15126 -24.74368 -24.49930 -22.63724 -21.62171 -21.08530 -19.93735 -19.51192 -18.08426 -17.80868 -17.34614 -17.06128 -16.84138 -16.46248 -16.37708 -16.21807 -15.97529 -15.41156 -15.24428 -15.17865 -14.95140 -14.82177 -14.31935 -14.04278 -13.55400 -13.37761 -13.27670 -13.09320 -13.04315 -13.02099 -12.79428 -12.69303 -12.42940 -12.24489 -12.12830 -11.95128 -11.49931 -11.34589 -11.04769 -10.49769 -10.36788 -10.18191 -10.05668 -10.00949 -9.31535 -8.46535 -5.94948 -0.57698 -0.19951 0.96064 1.39647 1.42215 1.52447 1.74437 1.93709 2.06613 2.29132 2.60910 2.88617 3.21275 3.32000 3.37788 3.50032 3.54275 3.67885 3.85562 4.05544 4.19960 4.27551 4.37382 4.45285 4.51200 4.54055 4.61113 4.68559 4.70818 4.76189 4.79022 5.06632 5.28502 5.31846 5.41115 5.43866 5.87038 6.09160 6.34966 6.38956 6.60936 6.65365 7.05770 7.13407 7.57509 8.13134 8.70492 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.002486 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.150876 B =11260.990618 C =12577.635070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.070 0.930 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.270 1.270 17 H -0.271 1.271 18 N -0.703 5.703 19 C 0.553 3.447 20 O -0.542 6.542 21 C -0.098 4.098 22 C -0.120 4.120 23 C 0.101 3.899 24 N -0.470 5.470 25 C 0.108 3.892 26 C -0.061 4.061 27 Cl -0.033 7.033 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.343 0.657 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.408 0.592 39 H 0.176 0.824 40 H 0.203 0.797 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.333 -1.025 -14.414 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.813 3.187 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.196 1.196 18 N -0.356 5.356 19 C 0.338 3.662 20 O -0.419 6.419 21 C -0.110 4.110 22 C -0.140 4.140 23 C -0.055 4.055 24 N -0.179 5.179 25 C -0.050 4.050 26 C -0.091 4.091 27 Cl -0.004 7.004 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.162 0.838 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.193 0.807 40 H 0.219 0.781 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.737 0.385 -15.352 22.714 hybrid contribution 0.437 -0.709 1.031 1.325 sum -16.299 -0.324 -14.321 21.699 Atomic orbital electron populations 1.22063 0.92878 1.03323 1.02798 1.21051 0.94860 0.97033 0.82683 0.91216 1.22379 0.86124 1.00776 0.98014 1.59977 1.10302 1.57702 1.04174 1.21555 0.90070 0.99274 0.95786 1.20963 0.90806 0.82104 0.83805 1.90506 1.72902 1.52742 1.35036 1.41917 1.06773 1.51577 1.20681 1.19604 0.83211 1.36870 1.06718 0.90499 1.25984 1.04687 0.95852 0.94536 1.69656 1.38294 1.38415 1.09643 0.85038 0.77079 0.78519 0.78030 1.20019 1.19471 1.19568 1.45828 1.66442 1.14357 1.08991 1.18185 0.78047 0.86363 0.83565 1.90846 1.50034 1.16035 1.84986 1.20413 1.01687 0.95514 0.93410 1.22727 0.96737 0.92259 1.02278 1.23482 0.93252 1.02117 0.86670 1.67770 1.13616 1.07661 1.28901 1.23151 0.93867 0.90092 0.97868 1.22441 1.02423 0.88503 0.95771 1.98421 1.91443 1.12504 1.97995 0.89808 0.93505 0.90589 0.91871 0.88153 0.83813 0.87667 0.90656 0.76887 0.91283 0.75436 0.80668 0.78051 0.79420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.48 71.98 0.68 -1.56 16 2 C 0.15 2.85 2.88 44.99 0.13 2.98 16 3 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 4 C 0.06 1.01 5.30 86.31 0.46 1.46 16 5 N -0.69 -19.13 6.12 -517.92 -3.17 -22.29 16 6 C 0.07 1.99 6.17 85.56 0.53 2.52 16 7 C 0.44 19.76 7.82 87.66 0.69 20.45 16 8 O -0.63 -33.78 15.78 -3.06 -0.05 -33.83 16 9 N -0.57 -28.31 5.29 -306.99 -1.62 -29.93 16 10 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 11 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 12 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 13 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 14 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 N -0.70 -13.28 4.31 -445.19 -1.92 -15.20 16 19 C 0.55 13.55 7.76 86.85 0.67 14.22 16 20 O -0.54 -16.93 13.83 -3.80 -0.05 -16.98 16 21 C -0.10 -2.10 5.91 -19.86 -0.12 -2.21 16 22 C -0.12 -1.76 9.61 22.63 0.22 -1.54 16 23 C 0.10 1.44 11.17 84.65 0.95 2.38 16 24 N -0.47 -8.68 10.33 -195.91 -2.02 -10.70 16 25 C 0.11 2.00 10.99 84.74 0.93 2.93 16 26 C -0.06 -1.35 6.38 22.71 0.14 -1.21 16 27 Cl -0.03 -0.80 26.24 -2.72 -0.07 -0.87 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.34 9.82 7.28 -89.69 -0.65 9.17 16 34 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.40 18.50 7.90 -92.71 -0.73 17.76 16 37 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.41 5.49 6.29 -92.71 -0.58 4.91 16 39 H 0.18 1.43 6.54 -2.91 -0.02 1.41 16 40 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 41 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -75.79 368.62 -0.90 -76.69 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.86 Total: 34.52 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 6.56 Total: 22.51 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -8.45 Total: -126.37 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.10 Total: -50.81 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.07 Total: -0.87 kcal Total: -75.79 -0.90 -76.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498123555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.590 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds