Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47616 * 2 1 4 4 N 1.46505 * 109.47154 * 120.00135 * 2 1 3 5 5 C 1.36935 * 119.99830 * 275.00037 * 4 2 1 6 6 H 1.08000 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99752 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99799 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47212 * 90.00259 * 9 7 5 11 11 H 1.48504 * 109.47124 * 209.99929 * 9 7 5 12 12 H 1.48501 * 109.47395 * 329.99892 * 9 7 5 13 13 C 1.52999 * 109.47159 * 239.99764 * 2 1 3 14 14 H 1.09001 * 110.88838 * 302.43358 * 13 2 1 15 15 C 1.55160 * 111.00451 * 66.35406 * 13 2 1 16 16 C 1.54331 * 103.02296 * 153.37787 * 15 13 2 17 17 N 1.47023 * 107.26793 * 338.14342 * 16 15 13 18 18 C 1.34775 * 125.64636 * 178.84844 * 17 16 15 19 19 O 1.21577 * 119.99320 * 184.99519 * 18 17 16 20 20 C 1.47628 * 120.00345 * 4.99037 * 18 17 16 21 21 C 1.39695 * 120.15195 * 44.31366 * 20 18 17 22 22 C 1.37794 * 119.89569 * 179.97438 * 21 20 18 23 23 C 1.38618 * 120.19951 * 359.97438 * 22 21 20 24 24 Cl 1.73595 * 119.84372 * 180.02562 * 23 22 21 25 25 C 1.38356 * 120.31221 * 359.97438 * 23 22 21 26 26 C 1.38254 * 120.10455 * 0.02562 * 25 23 22 27 27 F 1.35102 * 120.10302 * 180.27469 * 26 25 23 28 28 C 1.47424 * 108.70165 * 358.58109 * 17 16 15 29 29 H 1.08999 * 109.47616 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47004 * 300.00378 * 1 2 3 31 31 H 1.09003 * 109.47066 * 59.99580 * 1 2 3 32 32 H 0.96996 * 120.00230 * 94.99444 * 4 2 1 33 33 H 0.96997 * 120.00519 * 180.02562 * 8 7 5 34 34 H 1.08995 * 110.71955 * 271.94398 * 15 13 2 35 35 H 1.09004 * 110.71808 * 35.03569 * 15 13 2 36 36 H 1.08995 * 109.99197 * 218.66509 * 16 15 13 37 37 H 1.09007 * 109.77259 * 97.49800 * 16 15 13 38 38 H 1.08000 * 120.05503 * 359.97438 * 21 20 18 39 39 H 1.07995 * 119.90434 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.94575 * 179.97438 * 25 23 22 41 41 H 1.09004 * 110.36773 * 143.19183 * 28 17 16 42 42 H 1.08993 * 110.36665 * 265.41051 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9233 -1.9393 3.4504 9 14 2.7903 0.2699 5.1182 10 1 1.5226 0.1798 5.8862 11 1 3.8945 -0.3240 5.9141 12 1 3.0963 1.6949 4.8335 13 6 2.0399 -0.7213 -1.2492 14 1 1.6545 -1.7399 -1.2944 15 6 1.6776 0.0688 -2.5345 16 6 2.7788 -0.3589 -3.5276 17 7 3.9165 -0.8466 -2.7343 18 6 5.0707 -1.3323 -3.2326 19 8 5.9100 -1.7929 -2.4833 20 6 5.3157 -1.3052 -4.6881 21 6 5.0131 -0.1605 -5.4294 22 6 5.2445 -0.1408 -6.7877 23 6 5.7770 -1.2532 -7.4205 24 17 6.0653 -1.2181 -9.1320 25 6 6.0808 -2.3910 -6.6943 26 6 5.8539 -2.4247 -5.3310 27 9 6.1557 -3.5338 -4.6210 28 6 3.5881 -0.7103 -1.3036 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2489 -1.6318 1.1527 33 1 3.2460 -2.3968 4.2425 34 1 0.6921 -0.2201 -2.8998 35 1 1.7201 1.1426 -2.3519 36 1 3.0869 0.4940 -4.1322 37 1 2.4061 -1.1564 -4.1705 38 1 4.5985 0.7077 -4.9388 39 1 5.0102 0.7439 -7.3610 40 1 6.4951 -3.2545 -7.1935 41 1 3.9934 -1.5505 -0.7396 42 1 3.9764 0.2303 -0.9132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501057508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -44.637274 kcal Electronic energy + Delta-G solvation = -26858.593883 eV Core-core repulsion = 22779.278678 eV Total energy + Delta-G solvation = -4079.315206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.24145 -40.50659 -39.08214 -37.74624 -36.91810 -35.24860 -32.67796 -31.73270 -31.11205 -30.41082 -28.65394 -28.14351 -24.92038 -23.98203 -23.40104 -22.74955 -21.55446 -19.88870 -19.68901 -18.15787 -17.68272 -17.15259 -16.97267 -16.21227 -15.94186 -15.79551 -15.49108 -14.80840 -14.58656 -14.30731 -13.94659 -13.79785 -13.68464 -13.66722 -13.28700 -12.94839 -12.74023 -12.58768 -12.28937 -12.10822 -11.95126 -11.79505 -11.66302 -11.53247 -11.36039 -10.89872 -10.78087 -10.60819 -10.57468 -10.23585 -10.04609 -9.87104 -9.62963 -9.55586 -9.20414 -8.91250 -8.59249 -6.96459 -5.75077 -3.04534 0.17767 0.56040 1.44730 2.42758 2.80896 3.11194 3.44384 3.49366 3.51628 3.71745 4.07400 4.16290 4.38413 4.56501 4.59082 4.61691 4.79345 4.90007 4.94886 5.24691 5.29477 5.31609 5.44029 5.53238 5.54719 5.55224 5.62361 5.85102 5.86020 5.89347 6.00637 6.09205 6.13401 6.26224 6.33537 6.36598 6.53091 6.60597 6.82739 7.05223 7.46710 7.70494 8.05687 8.42668 9.54085 10.10601 10.44826 11.47336 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002370 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.162467 B =11811.782477 C =12574.343192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.124 4.124 16 C 0.095 3.905 17 N -0.611 5.611 18 C 0.569 3.431 19 O -0.516 6.516 20 C -0.151 4.151 21 C -0.049 4.049 22 C -0.126 4.126 23 C 0.008 3.992 24 Cl -0.052 7.052 25 C -0.154 4.154 26 C 0.164 3.836 27 F -0.113 7.113 28 C 0.120 3.880 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.087 0.913 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 3.972 -27.207 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.163 4.163 16 C -0.027 4.027 17 N -0.344 5.344 18 C 0.356 3.644 19 O -0.392 6.392 20 C -0.155 4.155 21 C -0.067 4.067 22 C -0.144 4.144 23 C -0.019 4.019 24 Cl -0.023 7.023 25 C -0.173 4.173 26 C 0.143 3.857 27 F -0.091 7.091 28 C -0.001 4.001 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.105 0.895 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.856 3.767 -26.788 27.115 hybrid contribution 0.199 -0.102 0.850 0.879 sum 2.055 3.665 -25.938 26.276 Atomic orbital electron populations 1.22441 0.99070 1.00913 0.99986 1.20152 0.91927 0.95124 0.85326 0.93280 1.42425 1.78160 1.10750 1.05264 1.19184 1.36786 0.93801 0.87276 0.91229 1.24738 1.02097 0.95949 0.98044 1.69651 1.50687 1.08639 1.28873 0.86228 0.77258 0.78810 0.84097 1.21808 1.21807 1.20801 1.22681 0.93925 1.00401 0.95175 0.90026 1.22690 0.97610 1.01145 0.94827 1.22252 0.86877 0.98791 0.94818 1.48478 1.14730 1.62028 1.09203 1.17522 0.81583 0.78675 0.86658 1.90888 1.44329 1.44569 1.59411 1.20198 1.05148 0.95213 0.94982 1.21286 0.95616 0.97017 0.92815 1.21058 1.00758 0.98130 0.94494 1.20796 1.00171 0.95081 0.85870 1.98405 1.94426 1.98574 1.10910 1.20940 1.04671 0.99709 0.91994 1.17394 0.96519 0.83011 0.88755 1.91623 1.89957 1.49521 1.77994 1.22332 0.95323 1.03386 0.79079 0.93505 0.92745 0.94406 0.78236 0.93478 0.89920 0.90204 0.91360 0.91451 0.83083 0.83487 0.82932 0.89505 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.34 37.15 0.35 -2.34 16 2 C 0.19 3.34 2.41 -67.93 -0.16 3.18 16 3 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 4 N -0.72 -17.33 4.82 -53.43 -0.26 -17.59 16 5 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 9 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C -0.10 -1.51 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.29 5.59 -24.89 -0.14 -1.43 16 16 C 0.10 0.94 5.90 -3.06 -0.02 0.92 16 17 N -0.61 -8.57 3.33 -171.70 -0.57 -9.14 16 18 C 0.57 8.89 7.23 -12.43 -0.09 8.80 16 19 O -0.52 -10.48 16.67 5.30 0.09 -10.40 16 20 C -0.15 -1.79 5.40 -104.91 -0.57 -2.35 16 21 C -0.05 -0.40 8.43 -39.20 -0.33 -0.73 16 22 C -0.13 -0.84 9.81 -39.60 -0.39 -1.23 16 23 C 0.01 0.06 6.32 -39.40 -0.25 -0.19 16 24 Cl -0.05 -0.35 28.94 -51.86 -1.50 -1.85 16 25 C -0.15 -1.34 9.79 -39.53 -0.39 -1.73 16 26 C 0.16 1.92 7.25 -38.97 -0.28 1.63 16 27 F -0.11 -1.61 16.37 2.25 0.04 -1.57 16 28 C 0.12 2.00 6.11 -2.52 -0.02 1.98 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 32 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 35 H 0.08 0.77 8.01 -51.93 -0.42 0.36 16 36 H 0.07 0.49 5.70 -51.93 -0.30 0.20 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.15 0.96 6.09 -52.49 -0.32 0.64 16 39 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.09 1.75 7.99 -51.93 -0.41 1.33 16 42 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -32.85 367.81 -9.22 -42.07 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.49 Total: 5.27 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.76 Total: -2.27 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.10 Total: -54.13 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.85 -9.22 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501057508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.571 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds