Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47616 * 2 1 4 4 N 1.46505 * 109.47154 * 120.00135 * 2 1 3 5 5 C 1.36935 * 119.99830 * 275.00037 * 4 2 1 6 6 H 1.08000 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99752 * 179.97438 * 5 4 2 8 8 N 1.31613 * 120.00179 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99799 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47212 * 90.00259 * 9 7 5 11 11 H 1.48504 * 109.47124 * 209.99929 * 9 7 5 12 12 H 1.48501 * 109.47395 * 329.99892 * 9 7 5 13 13 C 1.52999 * 109.47159 * 239.99764 * 2 1 3 14 14 H 1.09001 * 110.88838 * 302.43358 * 13 2 1 15 15 C 1.55160 * 111.00451 * 66.35406 * 13 2 1 16 16 C 1.54331 * 103.02296 * 153.37787 * 15 13 2 17 17 N 1.47023 * 107.26793 * 338.14342 * 16 15 13 18 18 C 1.34775 * 125.64636 * 178.84844 * 17 16 15 19 19 O 1.21577 * 119.99320 * 184.99519 * 18 17 16 20 20 C 1.47628 * 120.00345 * 4.99037 * 18 17 16 21 21 C 1.39695 * 120.15195 * 44.31366 * 20 18 17 22 22 C 1.37794 * 119.89569 * 179.97438 * 21 20 18 23 23 C 1.38618 * 120.19951 * 359.97438 * 22 21 20 24 24 Cl 1.73595 * 119.84372 * 180.02562 * 23 22 21 25 25 C 1.38356 * 120.31221 * 359.97438 * 23 22 21 26 26 C 1.38254 * 120.10455 * 0.02562 * 25 23 22 27 27 F 1.35102 * 120.10302 * 180.27469 * 26 25 23 28 28 C 1.47424 * 108.70165 * 358.58109 * 17 16 15 29 29 H 1.08999 * 109.47616 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47004 * 300.00378 * 1 2 3 31 31 H 1.09003 * 109.47066 * 59.99580 * 1 2 3 32 32 H 0.96996 * 120.00230 * 94.99444 * 4 2 1 33 33 H 0.96997 * 120.00519 * 180.02562 * 8 7 5 34 34 H 1.08995 * 110.71955 * 271.94398 * 15 13 2 35 35 H 1.09004 * 110.71808 * 35.03569 * 15 13 2 36 36 H 1.08995 * 109.99197 * 218.66509 * 16 15 13 37 37 H 1.09007 * 109.77259 * 97.49800 * 16 15 13 38 38 H 1.08000 * 120.05503 * 359.97438 * 21 20 18 39 39 H 1.07995 * 119.90434 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.94575 * 179.97438 * 25 23 22 41 41 H 1.09004 * 110.36773 * 143.19183 * 28 17 16 42 42 H 1.08993 * 110.36665 * 265.41051 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9233 -1.9393 3.4504 9 14 2.7903 0.2699 5.1182 10 1 1.5226 0.1798 5.8862 11 1 3.8945 -0.3240 5.9141 12 1 3.0963 1.6949 4.8335 13 6 2.0399 -0.7213 -1.2492 14 1 1.6545 -1.7399 -1.2944 15 6 1.6776 0.0688 -2.5345 16 6 2.7788 -0.3589 -3.5276 17 7 3.9165 -0.8466 -2.7343 18 6 5.0707 -1.3323 -3.2326 19 8 5.9100 -1.7929 -2.4833 20 6 5.3157 -1.3052 -4.6881 21 6 5.0131 -0.1605 -5.4294 22 6 5.2445 -0.1408 -6.7877 23 6 5.7770 -1.2532 -7.4205 24 17 6.0653 -1.2181 -9.1320 25 6 6.0808 -2.3910 -6.6943 26 6 5.8539 -2.4247 -5.3310 27 9 6.1557 -3.5338 -4.6210 28 6 3.5881 -0.7103 -1.3036 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2489 -1.6318 1.1527 33 1 3.2460 -2.3968 4.2425 34 1 0.6921 -0.2201 -2.8998 35 1 1.7201 1.1426 -2.3519 36 1 3.0869 0.4940 -4.1322 37 1 2.4061 -1.1564 -4.1705 38 1 4.5985 0.7077 -4.9388 39 1 5.0102 0.7439 -7.3610 40 1 6.4951 -3.2545 -7.1935 41 1 3.9934 -1.5505 -0.7396 42 1 3.9764 0.2303 -0.9132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501057508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -65.264367 kcal Electronic energy + Delta-G solvation = -26859.488341 eV Core-core repulsion = 22779.278678 eV Total energy + Delta-G solvation = -4080.209663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.18595 -41.55069 -39.93524 -38.97482 -37.54572 -36.82022 -34.36000 -32.79991 -31.92038 -31.60102 -30.03586 -29.52897 -26.04925 -25.72212 -24.19792 -23.66373 -22.85043 -21.08036 -20.90041 -19.26577 -18.91199 -18.44182 -18.02603 -17.23837 -17.09771 -16.75478 -16.47008 -16.34641 -15.78180 -15.38232 -15.32704 -15.10438 -14.77856 -14.48924 -14.32758 -14.21963 -14.01479 -13.67157 -13.48008 -13.38154 -13.09892 -12.87539 -12.75114 -12.66519 -12.48111 -12.33678 -12.20789 -12.11103 -12.02446 -11.66521 -11.52137 -11.38180 -11.21199 -10.92794 -10.24232 -9.97031 -9.72418 -8.98259 -7.91856 -5.19450 -0.57779 -0.10495 0.84718 1.39753 1.46069 1.47882 1.55832 1.76124 2.27683 2.56993 2.96065 3.19994 3.41937 3.44629 3.61196 3.70119 3.81011 3.87184 3.90674 4.17412 4.19419 4.34110 4.43615 4.53603 4.59005 4.64464 4.66196 4.79228 4.86248 4.88145 4.88802 4.93775 4.99534 5.11523 5.12561 5.22829 5.34277 5.41771 5.42985 5.54834 5.67419 6.30196 6.35686 6.88893 7.35800 8.14417 8.34583 9.31988 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.002370 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.162467 B =11811.782477 C =12574.343192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.052 0.948 4 N -0.740 5.740 5 C -0.228 4.228 6 H 0.079 0.921 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.968 3.032 10 H -0.287 1.287 11 H -0.302 1.302 12 H -0.267 1.267 13 C -0.094 4.094 14 H 0.071 0.929 15 C -0.111 4.111 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.561 3.439 19 O -0.583 6.583 20 C -0.168 4.168 21 C -0.037 4.037 22 C -0.105 4.105 23 C 0.011 3.989 24 Cl -0.038 7.038 25 C -0.148 4.148 26 C 0.134 3.866 27 F -0.140 7.140 28 C 0.124 3.876 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.368 0.632 33 H 0.247 0.753 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.034 0.966 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 7.098 -31.023 31.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.070 0.930 4 N -0.379 5.379 5 C -0.360 4.360 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.798 3.202 10 H -0.214 1.214 11 H -0.230 1.230 12 H -0.192 1.192 13 C -0.114 4.114 14 H 0.090 0.910 15 C -0.149 4.149 16 C -0.031 4.031 17 N -0.339 5.339 18 C 0.351 3.649 19 O -0.464 6.464 20 C -0.172 4.172 21 C -0.055 4.055 22 C -0.123 4.123 23 C -0.016 4.016 24 Cl -0.009 7.009 25 C -0.167 4.167 26 C 0.113 3.887 27 F -0.119 7.119 28 C 0.001 3.999 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.193 0.807 39 H 0.202 0.798 40 H 0.183 0.817 41 H 0.053 0.947 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.020 6.963 -30.679 31.460 hybrid contribution 0.737 -1.015 1.854 2.239 sum 0.757 5.948 -28.825 29.442 Atomic orbital electron populations 1.22274 0.96916 1.00809 1.01262 1.20447 0.93207 0.94885 0.84391 0.93039 1.42699 1.78460 1.10239 1.06538 1.19612 1.34073 0.94157 0.88180 0.90289 1.25542 1.03493 0.96831 1.01540 1.69827 1.53112 1.10381 1.29167 0.85208 0.76693 0.78163 0.80159 1.21450 1.22954 1.19192 1.22500 0.92026 1.00508 0.96358 0.91029 1.22744 0.99210 1.01321 0.91613 1.22626 0.85044 1.00784 0.94617 1.48545 1.15535 1.61379 1.08440 1.18232 0.81039 0.77451 0.88216 1.90842 1.46564 1.47538 1.61410 1.20004 1.07548 0.97057 0.92601 1.21503 0.94769 0.96004 0.93211 1.21439 0.98410 0.98693 0.93808 1.20953 0.99291 0.94851 0.86518 1.98422 1.94263 1.98511 1.09671 1.21038 1.04109 1.00845 0.90691 1.17752 0.98374 0.82668 0.89879 1.91549 1.90538 1.50927 1.78837 1.22045 0.96762 1.00423 0.80656 0.94314 0.94751 0.89744 0.80059 0.94391 0.86917 0.88464 0.87378 0.89787 0.80687 0.79779 0.81688 0.94721 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.34 71.98 0.67 -4.02 16 2 C 0.18 6.33 2.41 44.99 0.11 6.44 16 3 H 0.05 1.81 8.05 -2.39 -0.02 1.79 16 4 N -0.74 -36.48 4.82 -322.94 -1.56 -38.04 16 5 C -0.23 -12.53 9.93 84.03 0.83 -11.69 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 8 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 9 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C -0.09 -2.72 2.63 -9.40 -0.02 -2.74 16 14 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.11 -1.83 5.59 31.79 0.18 -1.65 16 16 C 0.09 1.43 5.90 86.73 0.51 1.94 16 17 N -0.61 -16.97 3.33 -815.41 -2.71 -19.68 16 18 C 0.56 18.25 7.23 86.72 0.63 18.87 16 19 O -0.58 -25.85 16.67 -3.96 -0.07 -25.91 16 20 C -0.17 -3.85 5.40 -20.05 -0.11 -3.96 16 21 C -0.04 -0.46 8.43 22.52 0.19 -0.27 16 22 C -0.11 -0.91 9.81 22.26 0.22 -0.69 16 23 C 0.01 0.13 6.32 22.39 0.14 0.27 16 24 Cl -0.04 -0.38 28.94 -2.72 -0.08 -0.46 16 25 C -0.15 -2.36 9.79 22.30 0.22 -2.15 16 26 C 0.13 3.16 7.25 22.67 0.16 3.33 16 27 F -0.14 -4.33 16.37 44.97 0.74 -3.59 16 28 C 0.12 4.33 6.11 86.86 0.53 4.86 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.81 7.50 -2.39 -0.02 1.79 16 32 H 0.37 20.24 7.80 -92.71 -0.72 19.52 16 33 H 0.25 15.35 8.31 -92.71 -0.77 14.57 16 34 H 0.11 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.10 1.35 8.01 -2.38 -0.02 1.33 16 36 H 0.11 0.93 5.70 -2.39 -0.01 0.92 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.18 1.31 6.09 -2.91 -0.02 1.30 16 39 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.03 1.55 7.99 -2.38 -0.02 1.53 16 42 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 Total: -1.00 -79.76 367.81 3.70 -76.07 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.33 Total: 19.67 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 4.73 Total: 4.19 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.98 Total: -119.10 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.07 Total: -25.91 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.74 Total: -3.59 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -79.76 3.70 -76.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501057508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.803 kcal (2) G-P(sol) polarization free energy of solvation -79.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds